RNA–Protein interactions for RNA: ENST00000331148.5

CLSTN3-202, Transcript of calsyntenin 3, humanhuman

TSL 1 (best)

Gene CLSTN3, Length 2,288 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-202ENST00000331148 GOLGA2Q08379 1002 aa23.34■■□□□ 1.33
CLSTN3-202ENST00000331148 SYNMO15061 1565 aa23.33■■□□□ 1.33
CLSTN3-202ENST00000331148 MYOM2P54296 1465 aa23.33■■□□□ 1.33
CLSTN3-202ENST00000331148 PIK3C2BO00750 1634 aa23.32■■□□□ 1.32
CLSTN3-202ENST00000331148 IFT172Q9UG01 1749 aa23.32■■□□□ 1.32
CLSTN3-202ENST00000331148 MLECQ14165 292 aa23.31■■□□□ 1.32
CLSTN3-202ENST00000331148 L1TD1Q5T7N2 865 aaKnown RBP23.31■■□□□ 1.32
CLSTN3-202ENST00000331148 SLC52A1Q9NWF4 448 aa23.31■■□□□ 1.32
CLSTN3-202ENST00000331148 WDR43Q15061 677 aaKnown RBP eCLIP23.31■■□□□ 1.32
CLSTN3-202ENST00000331148 KIAA1210Q9ULL0 1709 aa23.3■■□□□ 1.32
CLSTN3-202ENST00000331148 PREX1Q8TCU6 1659 aa23.3■■□□□ 1.32
CLSTN3-202ENST00000331148 RPGRIP1LQ68CZ1 1315 aa23.29■■□□□ 1.32
CLSTN3-202ENST00000331148 ADGRF5Q8IZF2 1346 aa23.29■■□□□ 1.32
CLSTN3-202ENST00000331148 SLFN5Q08AF3 891 aa23.29■■□□□ 1.32
CLSTN3-202ENST00000331148 IDI1Q13907 227 aa23.29■■□□□ 1.32
CLSTN3-202ENST00000331148 BECN1Q14457 450 aa23.29■■□□□ 1.32
CLSTN3-202ENST00000331148 CLTCQ00610 1675 aaKnown RBP23.28■■□□□ 1.32
CLSTN3-202ENST00000331148 TMF1P82094 1093 aa23.28■■□□□ 1.32
CLSTN3-202ENST00000331148 PPP2R1AP30153 589 aa23.26■■□□□ 1.31
CLSTN3-202ENST00000331148 FBXO31Q5XUX0 539 aaPredicted RBP23.26■■□□□ 1.31
CLSTN3-202ENST00000331148 NRXN1Q9ULB1 1477 aa23.25■■□□□ 1.31
CLSTN3-202ENST00000331148 NLRP1Q9C000 1473 aa23.25■■□□□ 1.31
CLSTN3-202ENST00000331148 TRMT2AQ8IZ69 625 aaKnown RBP23.25■■□□□ 1.31
CLSTN3-202ENST00000331148 SLKQ9H2G2 1235 aaPredicted RBP23.25■■□□□ 1.31
CLSTN3-202ENST00000331148 PPLO60437 1756 aa23.24■■□□□ 1.31
CLSTN3-202ENST00000331148 SEC24BO95487 1268 aa23.24■■□□□ 1.31
CLSTN3-202ENST00000331148 IGHDP01880 384 aa23.24■■□□□ 1.31
CLSTN3-202ENST00000331148 CFAP70Q5T0N1 1121 aa23.24■■□□□ 1.31
CLSTN3-202ENST00000331148 ESF1Q9H501 851 aaKnown RBP23.24■■□□□ 1.31
CLSTN3-202ENST00000331148 NKTRP30414 1462 aaKnown RBP23.23■■□□□ 1.31
CLSTN3-202ENST00000331148 ERVK-7P63135 1459 aa23.23■■□□□ 1.31
CLSTN3-202ENST00000331148 ANTXR1Q9H6X2 564 aa23.22■■□□□ 1.31
CLSTN3-202ENST00000331148 MAPK8IP3Q9UPT6 1336 aa23.22■■□□□ 1.31
CLSTN3-202ENST00000331148 IQGAP1P46940 1657 aa23.21■■□□□ 1.31
CLSTN3-202ENST00000331148 SCAF11Q99590 1463 aaKnown RBP23.21■■□□□ 1.31
CLSTN3-202ENST00000331148 BCAR3O75815 825 aa23.2■■□□□ 1.3
CLSTN3-202ENST00000331148 VGFO15240 615 aaPredicted RBP23.19■■□□□ 1.3
CLSTN3-202ENST00000331148 SPINK5Q9NQ38 1064 aaPredicted RBP23.18■■□□□ 1.3
CLSTN3-202ENST00000331148 KNSTRNQ9Y448 316 aa23.18■■□□□ 1.3
CLSTN3-202ENST00000331148 CGNL1Q0VF96 1302 aa23.17■■□□□ 1.3
CLSTN3-202ENST00000331148 ZMYM3Q14202 1370 aa23.17■■□□□ 1.3
CLSTN3-202ENST00000331148 PIK3C2GO75747 1445 aa23.17■■□□□ 1.3
CLSTN3-202ENST00000331148 TMEM131LA2VDJ0 1609 aa23.16■■□□□ 1.3
CLSTN3-202ENST00000331148 AMER1Q5JTC6 1135 aaPredicted RBP23.16■■□□□ 1.3
CLSTN3-202ENST00000331148 NEXMIFQ5QGS0 1516 aa23.16■■□□□ 1.3
CLSTN3-202ENST00000331148 SPATA31D1Q6ZQQ2 1576 aa23.16■■□□□ 1.3
CLSTN3-202ENST00000331148 C14orf93Q9H972 538 aaKnown RBP23.16■■□□□ 1.3
CLSTN3-202ENST00000331148 XRCC6P12956 609 aaKnown RBP eCLIP23.14■■□□□ 1.29
CLSTN3-202ENST00000331148 CCDC146Q8IYE0 955 aa23.14■■□□□ 1.29
CLSTN3-202ENST00000331148 MYO5BQ9ULV0 1848 aa23.14■■□□□ 1.29
CLSTN3-202ENST00000331148 FSD2A1L4K1 749 aa23.13■■□□□ 1.29
CLSTN3-202ENST00000331148 GLIPR1L2Q4G1C9 344 aa23.13■■□□□ 1.29
CLSTN3-202ENST00000331148 GOLGA6L3A6NEY3 463 aa23.13■■□□□ 1.29
CLSTN3-202ENST00000331148 NUTM2DQ5VT03 806 aaPredicted RBP23.13■■□□□ 1.29
CLSTN3-202ENST00000331148 CLUAP1Q96AJ1 413 aa23.13■■□□□ 1.29
CLSTN3-202ENST00000331148 PDE3AQ14432 1141 aa23.12■■□□□ 1.29
CLSTN3-202ENST00000331148 PKNOX2Q96KN3 472 aa23.12■■□□□ 1.29
CLSTN3-202ENST00000331148 STAG3Q9UJ98 1225 aa23.12■■□□□ 1.29
CLSTN3-202ENST00000331148 NINLQ9Y2I6 1382 aa23.12■■□□□ 1.29
CLSTN3-202ENST00000331148 SETBP1Q9Y6X0 1596 aa23.12■■□□□ 1.29
CLSTN3-202ENST00000331148 E9PSI1 815 aa23.12■■□□□ 1.29
CLSTN3-202ENST00000331148 ZFYVE9O95405 1425 aa23.12■■□□□ 1.29
CLSTN3-202ENST00000331148 TBC1D32Q96NH3 1257 aa23.11■■□□□ 1.29
CLSTN3-202ENST00000331148 ARXQ96QS3 562 aa23.11■■□□□ 1.29
CLSTN3-202ENST00000331148 PNNQ9H307 717 aaKnown RBP23.11■■□□□ 1.29
CLSTN3-202ENST00000331148 CLCN1P35523 988 aa23.1■■□□□ 1.29
CLSTN3-202ENST00000331148 NAP1L5Q96NT1 182 aaPredicted RBP23.1■■□□□ 1.29
CLSTN3-202ENST00000331148 TBC1D2Q9BYX2 928 aa23.1■■□□□ 1.29
CLSTN3-202ENST00000331148 APAF1O14727 1248 aa23.1■■□□□ 1.29
CLSTN3-202ENST00000331148 ASXL1Q8IXJ9 1541 aa23.1■■□□□ 1.29
CLSTN3-202ENST00000331148 UPF2Q9HAU5 1272 aaKnown RBP23.09■■□□□ 1.29
CLSTN3-202ENST00000331148 SLC24A1O60721 1099 aa23.07■■□□□ 1.28
CLSTN3-202ENST00000331148 PANK2Q9BZ23 570 aa23.07■■□□□ 1.28
CLSTN3-202ENST00000331148 COG6Q9Y2V7 657 aa23.07■■□□□ 1.28
CLSTN3-202ENST00000331148 PANK1Q8TE04 598 aa23.06■■□□□ 1.28
CLSTN3-202ENST00000331148 MCM4P33991 863 aa23.06■■□□□ 1.28
CLSTN3-202ENST00000331148 CDCA8Q53HL2 280 aa23.05■■□□□ 1.28
CLSTN3-202ENST00000331148 DMRT2Q9Y5R5 561 aa23.05■■□□□ 1.28
CLSTN3-202ENST00000331148 CENPJQ9HC77 1338 aaPredicted RBP23.05■■□□□ 1.28
CLSTN3-202ENST00000331148 ADGRB1O14514 1584 aa23.05■■□□□ 1.28
CLSTN3-202ENST00000331148 TMEM132EQ6IEE7 984 aa23.05■■□□□ 1.28
CLSTN3-202ENST00000331148 CANXP27824 592 aaKnown RBP23.04■■□□□ 1.28
CLSTN3-202ENST00000331148 NPC1L1Q9UHC9 1359 aa23.03■■□□□ 1.28
CLSTN3-202ENST00000331148 A2ML1A8K2U0 1454 aa23.03■■□□□ 1.28
CLSTN3-202ENST00000331148 MYO3AQ8NEV4 1616 aa23.02■■□□□ 1.28
CLSTN3-202ENST00000331148 GZF1Q9H116 711 aaPredicted RBP23.02■■□□□ 1.28
CLSTN3-202ENST00000331148 TRAK1Q9UPV9 953 aa23.02■■□□□ 1.28
CLSTN3-202ENST00000331148 TNRQ92752 1358 aa23.01■■□□□ 1.27
CLSTN3-202ENST00000331148 HSP90AA1P07900 732 aaKnown RBP23.01■■□□□ 1.27
CLSTN3-202ENST00000331148 RRP9O43818 475 aaKnown RBP23■■□□□ 1.27
CLSTN3-202ENST00000331148 PMFBP1Q8TBY8 1022 aa23■■□□□ 1.27
CLSTN3-202ENST00000331148 NGEFQ8N5V2 710 aa22.99■■□□□ 1.27
CLSTN3-202ENST00000331148 HSP90AA2PQ14568 343 aaPredicted RBP22.99■■□□□ 1.27
CLSTN3-202ENST00000331148 KDM5AP29375 1690 aaKnown RBP22.98■■□□□ 1.27
CLSTN3-202ENST00000331148 MYOM1P52179 1685 aa22.98■■□□□ 1.27
CLSTN3-202ENST00000331148 MRE11P49959 708 aa22.97■■□□□ 1.27
CLSTN3-202ENST00000331148 SPRYD3Q8NCJ5 442 aa22.97■■□□□ 1.27
CLSTN3-202ENST00000331148 SBNO2Q9Y2G9 1366 aa22.97■■□□□ 1.27
CLSTN3-202ENST00000331148 VSIG10Q8N0Z9 540 aa22.97■■□□□ 1.27
CLSTN3-202ENST00000331148 TRAK2O60296 914 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms