RNA–Protein interactions for RNA: ENST00000331148.5

CLSTN3-202, Transcript of calsyntenin 3, humanhuman

TSL 1 (best)

Gene CLSTN3, Length 2,288 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-202ENST00000331148 NISCHQ9Y2I1 1504 aa37.65■■■■□ 3.62
CLSTN3-202ENST00000331148 CCDC180Q9P1Z9 1646 aa32.8■■■□□ 2.84
CLSTN3-202ENST00000331148 ZCCHC6Q5VYS8 1495 aaKnown RBP31.62■■■□□ 2.65
CLSTN3-202ENST00000331148 DCAF8L2P0C7V8 631 aa31.18■■■□□ 2.58
CLSTN3-202ENST00000331148 DCAF1Q9Y4B6 1507 aa31.15■■■□□ 2.58
CLSTN3-202ENST00000331148 ABCC9O60706 1549 aa30.91■■■□□ 2.54
CLSTN3-202ENST00000331148 SHROOM4Q9ULL8 1493 aa30.86■■■□□ 2.53
CLSTN3-202ENST00000331148 MYO15BQ96JP2 1530 aa30.76■■■□□ 2.51
CLSTN3-202ENST00000331148 HRCP23327 699 aa30.49■■■□□ 2.47
CLSTN3-202ENST00000331148 NACADO15069 1562 aa30.48■■■□□ 2.47
CLSTN3-202ENST00000331148 SUPT5HO00267 1087 aaKnown RBP30.26■■■□□ 2.43
CLSTN3-202ENST00000331148 RB1CC1Q8TDY2 1594 aa30.2■■■□□ 2.42
CLSTN3-202ENST00000331148 SCRIBQ14160 1630 aa30.16■■■□□ 2.42
CLSTN3-202ENST00000331148 CHIC1Q5VXU3 224 aa29.84■■■□□ 2.37
CLSTN3-202ENST00000331148 PCGF6Q9BYE7 350 aa29.84■■■□□ 2.37
CLSTN3-202ENST00000331148 PPARGC1BQ86YN6 1023 aaKnown RBP29.73■■■□□ 2.35
CLSTN3-202ENST00000331148 UNC13AQ9UPW8 1703 aa29.58■■■□□ 2.33
CLSTN3-202ENST00000331148 BICRAQ9NZM4 1560 aa29.28■■■□□ 2.28
CLSTN3-202ENST00000331148 RSF1Q96T23 1441 aaPredicted RBP29.27■■■□□ 2.28
CLSTN3-202ENST00000331148 CECR2Q9BXF3 1484 aa29.27■■■□□ 2.28
CLSTN3-202ENST00000331148 PABPN1Q86U42 306 aaKnown RBP eCLIP29.22■■■□□ 2.27
CLSTN3-202ENST00000331148 PELP1Q8IZL8 1130 aaKnown RBP29.16■■■□□ 2.26
CLSTN3-202ENST00000331148 MROH2BQ7Z745 1585 aa29.1■■■□□ 2.25
CLSTN3-202ENST00000331148 BAZ1AQ9NRL2 1556 aaPredicted RBP29.05■■■□□ 2.24
CLSTN3-202ENST00000331148 TRIM26Q12899 539 aaPredicted RBP29.04■■■□□ 2.24
CLSTN3-202ENST00000331148 LOC105371045A0A1W2PR82 267 aa29.01■■■□□ 2.24
CLSTN3-202ENST00000331148 SMARCA4P51532 1647 aa28.9■■■□□ 2.22
CLSTN3-202ENST00000331148 WIZO95785 1651 aa28.87■■■□□ 2.21
CLSTN3-202ENST00000331148 ZEB1P37275 1124 aaPredicted RBP28.78■■■□□ 2.2
CLSTN3-202ENST00000331148 SCAF1Q9H7N4 1312 aaKnown RBP28.68■■■□□ 2.18
CLSTN3-202ENST00000331148 PEG3Q9GZU2 1588 aa28.56■■■□□ 2.16
CLSTN3-202ENST00000331148 TOP2AP11388 1531 aaKnown RBP28.54■■■□□ 2.16
CLSTN3-202ENST00000331148 ATAD2BQ9ULI0 1458 aa28.42■■■□□ 2.14
CLSTN3-202ENST00000331148 EIF4G1Q04637 1599 aaKnown RBP28.4■■■□□ 2.14
CLSTN3-202ENST00000331148 SMARCA2P51531 1590 aa28.39■■■□□ 2.14
CLSTN3-202ENST00000331148 CCDC88BA6NC98 1476 aa28.3■■■□□ 2.12
CLSTN3-202ENST00000331148 BAZ1BQ9UIG0 1483 aaKnown RBP28.27■■■□□ 2.12
CLSTN3-202ENST00000331148 NCAPD3P42695 1498 aa28.15■■■□□ 2.1
CLSTN3-202ENST00000331148 HMGXB3Q12766 1538 aa28.11■■■□□ 2.09
CLSTN3-202ENST00000331148 TRIM41Q8WV44 630 aa28.07■■■□□ 2.08
CLSTN3-202ENST00000331148 ACIN1Q9UKV3 1341 aaKnown RBP28.07■■■□□ 2.08
CLSTN3-202ENST00000331148 MYT1Q01538 1121 aa27.98■■■□□ 2.07
CLSTN3-202ENST00000331148 CC2D2AQ9P2K1 1620 aa27.96■■■□□ 2.07
CLSTN3-202ENST00000331148 NEUROD1Q13562 356 aa27.95■■■□□ 2.07
CLSTN3-202ENST00000331148 FAM9AQ8IZU1 332 aaPredicted RBP27.94■■■□□ 2.06
CLSTN3-202ENST00000331148 GTF3C3Q9Y5Q9 886 aa27.77■■■□□ 2.04
CLSTN3-202ENST00000331148 CENPBP07199 599 aaPredicted RBP27.74■■■□□ 2.03
CLSTN3-202ENST00000331148 ABCC8Q09428 1581 aa27.73■■■□□ 2.03
CLSTN3-202ENST00000331148 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.73■■■□□ 2.03
CLSTN3-202ENST00000331148 EHMT2Q96KQ7 1210 aa27.72■■■□□ 2.03
CLSTN3-202ENST00000331148 CCER1Q8TC90 406 aaPredicted RBP27.7■■■□□ 2.03
CLSTN3-202ENST00000331148 DIEXFQ68CQ4 756 aaKnown RBP27.66■■■□□ 2.02
CLSTN3-202ENST00000331148 DNAJC5BQ9UF47 199 aa27.61■■■□□ 2.01
CLSTN3-202ENST00000331148 CFTRP13569 1480 aa27.56■■■□□ 2
CLSTN3-202ENST00000331148 WRNQ14191 1432 aaPredicted RBP eCLIP27.55■■■□□ 2
CLSTN3-202ENST00000331148 PRDM2Q13029 1718 aa27.46■■□□□ 1.99
CLSTN3-202ENST00000331148 CADPSQ9ULU8 1353 aa27.46■■□□□ 1.99
CLSTN3-202ENST00000331148 SYNJ1O43426 1573 aa27.4■■□□□ 1.98
CLSTN3-202ENST00000331148 TOP2BQ02880 1626 aa27.29■■□□□ 1.96
CLSTN3-202ENST00000331148 SOGA1O94964 1423 aa27.26■■□□□ 1.95
CLSTN3-202ENST00000331148 BIVM-ERCC5R4GMW8 1640 aa27.25■■□□□ 1.95
CLSTN3-202ENST00000331148 ZNF316A6NFI3 1004 aaPredicted RBP27.21■■□□□ 1.95
CLSTN3-202ENST00000331148 EEA1Q15075 1411 aa27.21■■□□□ 1.95
CLSTN3-202ENST00000331148 CUX1P39880 1505 aa27.19■■□□□ 1.94
CLSTN3-202ENST00000331148 NESP48681 1621 aa27.18■■□□□ 1.94
CLSTN3-202ENST00000331148 LAMC3Q9Y6N6 1575 aa27.16■■□□□ 1.94
CLSTN3-202ENST00000331148 RUSC2Q8N2Y8 1516 aa27.15■■□□□ 1.94
CLSTN3-202ENST00000331148 FANCD2Q9BXW9 1451 aa27.14■■□□□ 1.94
CLSTN3-202ENST00000331148 CSRNP3Q8WYN3 585 aa27.11■■□□□ 1.93
CLSTN3-202ENST00000331148 YTHDC1Q96MU7 727 aaKnown RBP27.1■■□□□ 1.93
CLSTN3-202ENST00000331148 TTBK1Q5TCY1 1321 aaPredicted RBP27.08■■□□□ 1.93
CLSTN3-202ENST00000331148 CEP162Q5TB80 1403 aa27.05■■□□□ 1.92
CLSTN3-202ENST00000331148 PDS5BQ9NTI5 1447 aa26.98■■□□□ 1.91
CLSTN3-202ENST00000331148 MIER1Q8N108 512 aa26.96■■□□□ 1.91
CLSTN3-202ENST00000331148 CEP164Q9UPV0 1460 aa26.95■■□□□ 1.91
CLSTN3-202ENST00000331148 TNIKQ9UKE5 1360 aa26.91■■□□□ 1.9
CLSTN3-202ENST00000331148 DNMBPQ6XZF7 1577 aa26.9■■□□□ 1.9
CLSTN3-202ENST00000331148 FGD5Q6ZNL6 1462 aa26.88■■□□□ 1.89
CLSTN3-202ENST00000331148 TOPBP1Q92547 1522 aa26.85■■□□□ 1.89
CLSTN3-202ENST00000331148 KIF27Q86VH2 1401 aa26.85■■□□□ 1.89
CLSTN3-202ENST00000331148 GOLGA3Q08378 1498 aa26.84■■□□□ 1.89
CLSTN3-202ENST00000331148 KIF21BO75037 1637 aa26.83■■□□□ 1.89
CLSTN3-202ENST00000331148 KIF21AQ7Z4S6 1674 aa26.82■■□□□ 1.88
CLSTN3-202ENST00000331148 UBTFP17480 764 aaKnown RBP26.79■■□□□ 1.88
CLSTN3-202ENST00000331148 URB2Q14146 1524 aaKnown RBP26.79■■□□□ 1.88
CLSTN3-202ENST00000331148 CUX2O14529 1486 aa26.75■■□□□ 1.87
CLSTN3-202ENST00000331148 POLA1P09884 1462 aaPredicted RBP26.74■■□□□ 1.87
CLSTN3-202ENST00000331148 RAPGEF2Q9Y4G8 1499 aa26.69■■□□□ 1.86
CLSTN3-202ENST00000331148 PRXQ9BXM0 1461 aa26.68■■□□□ 1.86
CLSTN3-202ENST00000331148 RAD54L2Q9Y4B4 1467 aa26.67■■□□□ 1.86
CLSTN3-202ENST00000331148 ERICH3Q5RHP9 1530 aa26.64■■□□□ 1.86
CLSTN3-202ENST00000331148 ABCA10Q8WWZ4 1543 aa26.64■■□□□ 1.86
CLSTN3-202ENST00000331148 CLSPNQ9HAW4 1339 aa26.63■■□□□ 1.85
CLSTN3-202ENST00000331148 IGF1RP08069 1367 aa26.61■■□□□ 1.85
CLSTN3-202ENST00000331148 HNRNPUL2Q1KMD3 747 aaKnown RBP26.6■■□□□ 1.85
CLSTN3-202ENST00000331148 MRC2Q9UBG0 1479 aa26.6■■□□□ 1.85
CLSTN3-202ENST00000331148 SUPT16HQ9Y5B9 1047 aaKnown RBP26.54■■□□□ 1.84
CLSTN3-202ENST00000331148 WDR97A6NE52 1622 aa26.53■■□□□ 1.84
CLSTN3-202ENST00000331148 ERCC6Q03468 1493 aa26.49■■□□□ 1.83
CLSTN3-202ENST00000331148 CARMIL1Q5VZK9 1371 aa26.48■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms