RNA–Protein interactions for RNA: ENST00000316763.7

VRK3-201, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 1,938 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-201ENST00000316763 CDCA8Q53HL2 280 aa19.15■□□□□ 0.66
VRK3-201ENST00000316763 CHD2O14647 1828 aaKnown RBP19.14■□□□□ 0.66
VRK3-201ENST00000316763 ARHGEF28Q8N1W1 1705 aaKnown RBP19.14■□□□□ 0.65
VRK3-201ENST00000316763 PTPRUQ92729 1446 aa19.14■□□□□ 0.65
VRK3-201ENST00000316763 STK26Q9P289 416 aa19.14■□□□□ 0.65
VRK3-201ENST00000316763 RALBP1Q15311 655 aa19.13■□□□□ 0.65
VRK3-201ENST00000316763 PIK3R4Q99570 1358 aa19.13■□□□□ 0.65
VRK3-201ENST00000316763 LRPPRCP42704 1394 aaKnown RBP19.13■□□□□ 0.65
VRK3-201ENST00000316763 TMC1Q8TDI8 760 aa19.12■□□□□ 0.65
VRK3-201ENST00000316763 CNGB1Q14028 1251 aaPredicted RBP19.12■□□□□ 0.65
VRK3-201ENST00000316763 AMOTL2Q9Y2J4 779 aa19.12■□□□□ 0.65
VRK3-201ENST00000316763 ABCC11Q96J66 1382 aa19.11■□□□□ 0.65
VRK3-201ENST00000316763 DLC1Q96QB1 1528 aa19.1■□□□□ 0.65
VRK3-201ENST00000316763 QRICH2Q9H0J4 1663 aa19.1■□□□□ 0.65
VRK3-201ENST00000316763 KCNA6P17658 529 aa19.09■□□□□ 0.65
VRK3-201ENST00000316763 MYBBP1AQ9BQG0 1328 aaKnown RBP19.09■□□□□ 0.65
VRK3-201ENST00000316763 BRD4O60885 1362 aaPredicted RBP19.09■□□□□ 0.65
VRK3-201ENST00000316763 STRCP1A6NGW2 1772 aa19.08■□□□□ 0.64
VRK3-201ENST00000316763 XRN1Q8IZH2 1706 aaKnown RBP19.08■□□□□ 0.64
VRK3-201ENST00000316763 KNDC1Q76NI1 1749 aa19.07■□□□□ 0.64
VRK3-201ENST00000316763 TECPR2O15040 1411 aa19.07■□□□□ 0.64
VRK3-201ENST00000316763 MYT1Q01538 1121 aa19.07■□□□□ 0.64
VRK3-201ENST00000316763 PNISRQ8TF01 805 aaKnown RBP19.07■□□□□ 0.64
VRK3-201ENST00000316763 PUS7Q96PZ0 661 aaKnown RBP19.06■□□□□ 0.64
VRK3-201ENST00000316763 PRAM1Q96QH2 718 aa19.06■□□□□ 0.64
VRK3-201ENST00000316763 SMG6Q86US8 1419 aaKnown RBP19.06■□□□□ 0.64
VRK3-201ENST00000316763 ZNF335Q9H4Z2 1342 aaPredicted RBP19.06■□□□□ 0.64
VRK3-201ENST00000316763 PER1O15534 1290 aaPredicted RBP19.06■□□□□ 0.64
VRK3-201ENST00000316763 IRX6P78412 446 aaPredicted RBP19.06■□□□□ 0.64
VRK3-201ENST00000316763 PPP4R2Q9NY27 417 aa19.06■□□□□ 0.64
VRK3-201ENST00000316763 NWD1Q149M9 1564 aa19.05■□□□□ 0.64
VRK3-201ENST00000316763 SIRT1Q96EB6 747 aa19.05■□□□□ 0.64
VRK3-201ENST00000316763 ROBO2Q9HCK4 1378 aa19.05■□□□□ 0.64
VRK3-201ENST00000316763 WAPLQ7Z5K2 1190 aa19.04■□□□□ 0.64
VRK3-201ENST00000316763 CPS1P31327 1500 aa19.04■□□□□ 0.64
VRK3-201ENST00000316763 PANK3Q9H999 370 aa19.04■□□□□ 0.64
VRK3-201ENST00000316763 TULP4Q9NRJ4 1543 aa19.03■□□□□ 0.64
VRK3-201ENST00000316763 EVC2Q86UK5 1308 aa19.03■□□□□ 0.64
VRK3-201ENST00000316763 POGKQ9P215 609 aa19.03■□□□□ 0.64
VRK3-201ENST00000316763 FAM135BQ49AJ0 1406 aa19.02■□□□□ 0.64
VRK3-201ENST00000316763 MYOM1P52179 1685 aa19.02■□□□□ 0.64
VRK3-201ENST00000316763 PLEKHH1Q9ULM0 1364 aa19.01■□□□□ 0.63
VRK3-201ENST00000316763 PTCH1Q13635 1447 aa19.01■□□□□ 0.63
VRK3-201ENST00000316763 SAFB2Q14151 953 aaKnown RBP eCLIP19.01■□□□□ 0.63
VRK3-201ENST00000316763 NUDCQ9Y266 331 aa19.01■□□□□ 0.63
VRK3-201ENST00000316763 PARD3Q8TEW0 1356 aa19■□□□□ 0.63
VRK3-201ENST00000316763 NLRP13Q86W25 1043 aa19■□□□□ 0.63
VRK3-201ENST00000316763 PROSER2Q86WR7 435 aaPredicted RBP19■□□□□ 0.63
VRK3-201ENST00000316763 RBM33Q96EV2 1170 aaKnown RBP19■□□□□ 0.63
VRK3-201ENST00000316763 NKTRP30414 1462 aaKnown RBP18.99■□□□□ 0.63
VRK3-201ENST00000316763 MINK1Q8N4C8 1332 aaPredicted RBP18.97■□□□□ 0.63
VRK3-201ENST00000316763 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.96■□□□□ 0.63
VRK3-201ENST00000316763 XIRP1Q702N8 1843 aaKnown RBP18.94■□□□□ 0.62
VRK3-201ENST00000316763 LRRC7Q96NW7 1537 aa18.94■□□□□ 0.62
VRK3-201ENST00000316763 LTBP4Q8N2S1 1624 aa18.94■□□□□ 0.62
VRK3-201ENST00000316763 CABP2Q9NPB3 220 aa18.94■□□□□ 0.62
VRK3-201ENST00000316763 RBM19Q9Y4C8 960 aaKnown RBP18.94■□□□□ 0.62
VRK3-201ENST00000316763 TMEM94Q12767 1356 aa18.93■□□□□ 0.62
VRK3-201ENST00000316763 ATAD2Q6PL18 1390 aa18.93■□□□□ 0.62
VRK3-201ENST00000316763 NINLQ9Y2I6 1382 aa18.93■□□□□ 0.62
VRK3-201ENST00000316763 KNSTRNQ9Y448 316 aa18.92■□□□□ 0.62
VRK3-201ENST00000316763 AMER1Q5JTC6 1135 aaPredicted RBP18.92■□□□□ 0.62
VRK3-201ENST00000316763 CDK19Q9BWU1 502 aa18.92■□□□□ 0.62
VRK3-201ENST00000316763 SLC12A5Q9H2X9 1139 aa18.92■□□□□ 0.62
VRK3-201ENST00000316763 NPC1L1Q9UHC9 1359 aa18.92■□□□□ 0.62
VRK3-201ENST00000316763 NALCNQ8IZF0 1738 aa18.91■□□□□ 0.62
VRK3-201ENST00000316763 SRPK2P78362 688 aaKnown RBP18.91■□□□□ 0.62
VRK3-201ENST00000316763 CARD14Q9BXL6 1004 aa18.91■□□□□ 0.62
VRK3-201ENST00000316763 RNF123Q5XPI4 1314 aa18.9■□□□□ 0.62
VRK3-201ENST00000316763 C14orf37Q86TY3 774 aa18.9■□□□□ 0.62
VRK3-201ENST00000316763 WASLO00401 505 aaPredicted RBP18.89■□□□□ 0.61
VRK3-201ENST00000316763 NCOA3Q9Y6Q9 1424 aa18.89■□□□□ 0.61
VRK3-201ENST00000316763 INSRP06213 1382 aa18.89■□□□□ 0.61
VRK3-201ENST00000316763 ADGRL3Q9HAR2 1447 aa18.88■□□□□ 0.61
VRK3-201ENST00000316763 ANKRD36BQ8N2N9 1353 aa18.87■□□□□ 0.61
VRK3-201ENST00000316763 CC2D1BQ5T0F9 858 aaKnown RBP18.87■□□□□ 0.61
VRK3-201ENST00000316763 ADGRB2O60241 1585 aa18.87■□□□□ 0.61
VRK3-201ENST00000316763 PDE3BQ13370 1112 aa18.86■□□□□ 0.61
VRK3-201ENST00000316763 C19orf44Q9H6X5 657 aa18.86■□□□□ 0.61
VRK3-201ENST00000316763 B4GALNT3Q6L9W6 998 aa18.84■□□□□ 0.61
VRK3-201ENST00000316763 NSD3Q9BZ95 1437 aa18.83■□□□□ 0.6
VRK3-201ENST00000316763 CD163L1Q9NR16 1453 aa18.82■□□□□ 0.6
VRK3-201ENST00000316763 MSH6P52701 1360 aa18.82■□□□□ 0.6
VRK3-201ENST00000316763 CDC42BPGQ6DT37 1551 aa18.82■□□□□ 0.6
VRK3-201ENST00000316763 A0A1W2PP64 1363 aa18.82■□□□□ 0.6
VRK3-201ENST00000316763 NUTM2FA1L443 756 aa18.82■□□□□ 0.6
VRK3-201ENST00000316763 USP32Q8NFA0 1604 aa18.81■□□□□ 0.6
VRK3-201ENST00000316763 FMN2Q9NZ56 1722 aa18.81■□□□□ 0.6
VRK3-201ENST00000316763 TERF2IPQ9NYB0 399 aa18.8■□□□□ 0.6
VRK3-201ENST00000316763 CABP1Q9NZU7 370 aa18.8■□□□□ 0.6
VRK3-201ENST00000316763 RGPD8O14715 1765 aaPredicted RBP18.8■□□□□ 0.6
VRK3-201ENST00000316763 ATF3P18847 181 aa18.8■□□□□ 0.6
VRK3-201ENST00000316763 NUDT16Q96DE0 195 aaKnown RBP18.79■□□□□ 0.6
VRK3-201ENST00000316763 DCCP43146 1447 aa18.79■□□□□ 0.6
VRK3-201ENST00000316763 BLMP54132 1417 aaPredicted RBP18.79■□□□□ 0.6
VRK3-201ENST00000316763 ATP7BP35670 1465 aa18.78■□□□□ 0.6
VRK3-201ENST00000316763 SENP3-EIF4A1A0A087X0R7 540 aa18.78■□□□□ 0.6
VRK3-201ENST00000316763 CCDC61Q9Y6R9 512 aa18.78■□□□□ 0.6
VRK3-201ENST00000316763 CGNL1Q0VF96 1302 aa18.78■□□□□ 0.6
VRK3-201ENST00000316763 CADPS2Q86UW7 1296 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms