RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 UNC13BO14795 1591 aa18.6■□□□□ 0.57
CCNF-201ENST00000293968 MCM4P33991 863 aa18.6■□□□□ 0.57
CCNF-201ENST00000293968 MVPQ14764 893 aaKnown RBP18.6■□□□□ 0.57
CCNF-201ENST00000293968 NPC1L1Q9UHC9 1359 aa18.59■□□□□ 0.57
CCNF-201ENST00000293968 EXOSC9Q06265 439 aaKnown RBP18.58■□□□□ 0.57
CCNF-201ENST00000293968 LAMC1P11047 1609 aa18.58■□□□□ 0.56
CCNF-201ENST00000293968 IQGAP3Q86VI3 1631 aa18.58■□□□□ 0.56
CCNF-201ENST00000293968 TRAK2O60296 914 aa18.58■□□□□ 0.56
CCNF-201ENST00000293968 CHMP5Q9NZZ3 219 aa18.58■□□□□ 0.56
CCNF-201ENST00000293968 SYNMO15061 1565 aa18.58■□□□□ 0.56
CCNF-201ENST00000293968 WDR63Q8IWG1 891 aa18.57■□□□□ 0.56
CCNF-201ENST00000293968 XRCC6P12956 609 aaKnown RBP eCLIP18.57■□□□□ 0.56
CCNF-201ENST00000293968 GGT6Q6P531 493 aa18.57■□□□□ 0.56
CCNF-201ENST00000293968 PNNQ9H307 717 aaKnown RBP18.57■□□□□ 0.56
CCNF-201ENST00000293968 ABCC2Q92887 1545 aa18.57■□□□□ 0.56
CCNF-201ENST00000293968 ANTXR1Q9H6X2 564 aa18.57■□□□□ 0.56
CCNF-201ENST00000293968 HSP90AB1P08238 724 aaKnown RBP18.56■□□□□ 0.56
CCNF-201ENST00000293968 STK26Q9P289 416 aa18.56■□□□□ 0.56
CCNF-201ENST00000293968 ATP10AO60312 1499 aa18.55■□□□□ 0.56
CCNF-201ENST00000293968 POLR3AO14802 1390 aaPredicted RBP18.55■□□□□ 0.56
CCNF-201ENST00000293968 SCAPERQ9BY12 1400 aa18.55■□□□□ 0.56
CCNF-201ENST00000293968 LNPKQ9C0E8 428 aa18.55■□□□□ 0.56
CCNF-201ENST00000293968 PLCH2O75038 1416 aa18.53■□□□□ 0.56
CCNF-201ENST00000293968 CABP2Q9NPB3 220 aa18.53■□□□□ 0.56
CCNF-201ENST00000293968 MADDQ8WXG6 1647 aa18.53■□□□□ 0.56
CCNF-201ENST00000293968 ERVK-7P63135 1459 aa18.53■□□□□ 0.56
CCNF-201ENST00000293968 SRPK2P78362 688 aaKnown RBP18.52■□□□□ 0.56
CCNF-201ENST00000293968 AAMPQ13685 434 aa18.52■□□□□ 0.56
CCNF-201ENST00000293968 NOB1Q9ULX3 412 aaKnown RBP18.52■□□□□ 0.56
CCNF-201ENST00000293968 GGNBP2Q9H3C7 697 aa18.52■□□□□ 0.56
CCNF-201ENST00000293968 TRIM27P14373 513 aa18.52■□□□□ 0.55
CCNF-201ENST00000293968 SSH1Q8WYL5 1049 aa18.52■□□□□ 0.55
CCNF-201ENST00000293968 CLASP1Q7Z460 1538 aa18.51■□□□□ 0.55
CCNF-201ENST00000293968 TRIM44Q96DX7 344 aaPredicted RBP18.51■□□□□ 0.55
CCNF-201ENST00000293968 DDX19BQ9UMR2 479 aa18.51■□□□□ 0.55
CCNF-201ENST00000293968 UGGT1Q9NYU2 1555 aa18.49■□□□□ 0.55
CCNF-201ENST00000293968 TMEM57Q8N5G2 664 aa18.49■□□□□ 0.55
CCNF-201ENST00000293968 RIPK4P57078 832 aa18.48■□□□□ 0.55
CCNF-201ENST00000293968 RNF17Q9BXT8 1623 aaKnown RBP18.47■□□□□ 0.55
CCNF-201ENST00000293968 NOS1P29475 1434 aa18.47■□□□□ 0.55
CCNF-201ENST00000293968 KDM5AP29375 1690 aaKnown RBP18.47■□□□□ 0.55
CCNF-201ENST00000293968 ATF7IPQ6VMQ6 1270 aa18.47■□□□□ 0.55
CCNF-201ENST00000293968 PLXNC1O60486 1568 aa18.47■□□□□ 0.55
CCNF-201ENST00000293968 ELL2O00472 640 aaPredicted RBP18.47■□□□□ 0.55
CCNF-201ENST00000293968 UBE2Q2Q8WVN8 375 aa18.47■□□□□ 0.55
CCNF-201ENST00000293968 DDX11L8A8MPP1 907 aa18.46■□□□□ 0.55
CCNF-201ENST00000293968 ANKRD45Q5TZF3 282 aa18.46■□□□□ 0.55
CCNF-201ENST00000293968 C1orf115Q9H7X2 142 aa18.46■□□□□ 0.55
CCNF-201ENST00000293968 MRE11P49959 708 aa18.45■□□□□ 0.54
CCNF-201ENST00000293968 IQGAP1P46940 1657 aa18.44■□□□□ 0.54
CCNF-201ENST00000293968 EVC2Q86UK5 1308 aa18.44■□□□□ 0.54
CCNF-201ENST00000293968 IPO8O15397 1037 aaKnown RBP18.44■□□□□ 0.54
CCNF-201ENST00000293968 TRPM2O94759 1503 aa18.44■□□□□ 0.54
CCNF-201ENST00000293968 CLTCL1P53675 1640 aa18.44■□□□□ 0.54
CCNF-201ENST00000293968 TMPOP42166 694 aaKnown RBP18.44■□□□□ 0.54
CCNF-201ENST00000293968 GRPEL1Q9HAV7 217 aa18.44■□□□□ 0.54
CCNF-201ENST00000293968 NLRP1Q9C000 1473 aa18.43■□□□□ 0.54
CCNF-201ENST00000293968 NCLP19338 710 aaKnown RBP18.43■□□□□ 0.54
CCNF-201ENST00000293968 PTPRTO14522 1441 aa18.43■□□□□ 0.54
CCNF-201ENST00000293968 GBP4Q96PP9 640 aa18.42■□□□□ 0.54
CCNF-201ENST00000293968 CCDC27Q2M243 656 aa18.41■□□□□ 0.54
CCNF-201ENST00000293968 TNPO1Q92973 898 aaKnown RBP18.4■□□□□ 0.54
CCNF-201ENST00000293968 ERCC6L2Q5T890 1561 aa18.4■□□□□ 0.54
CCNF-201ENST00000293968 MINK1Q8N4C8 1332 aaPredicted RBP18.4■□□□□ 0.54
CCNF-201ENST00000293968 HDAC1Q13547 482 aaPredicted RBP18.39■□□□□ 0.53
CCNF-201ENST00000293968 CHD1LQ86WJ1 897 aa18.38■□□□□ 0.53
CCNF-201ENST00000293968 ANP32BQ92688 251 aaKnown RBP18.38■□□□□ 0.53
CCNF-201ENST00000293968 PHF23Q9BUL5 403 aaPredicted RBP18.38■□□□□ 0.53
CCNF-201ENST00000293968 C14orf93Q9H972 538 aaKnown RBP18.38■□□□□ 0.53
CCNF-201ENST00000293968 FSD2A1L4K1 749 aa18.38■□□□□ 0.53
CCNF-201ENST00000293968 MYOM1P52179 1685 aa18.38■□□□□ 0.53
CCNF-201ENST00000293968 GLIPR1L2Q4G1C9 344 aa18.38■□□□□ 0.53
CCNF-201ENST00000293968 APBB1O00213 710 aa18.37■□□□□ 0.53
CCNF-201ENST00000293968 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.37■□□□□ 0.53
CCNF-201ENST00000293968 THUMPD2Q9BTF0 503 aaKnown RBP18.37■□□□□ 0.53
CCNF-201ENST00000293968 GOLGA6L22H0YM25 854 aa18.37■□□□□ 0.53
CCNF-201ENST00000293968 FBLN1P23142 703 aa18.36■□□□□ 0.53
CCNF-201ENST00000293968 RBM42Q9BTD8 480 aaKnown RBP18.36■□□□□ 0.53
CCNF-201ENST00000293968 DIAPH1O60610 1272 aaKnown RBP18.36■□□□□ 0.53
CCNF-201ENST00000293968 ABCC1P33527 1531 aa18.36■□□□□ 0.53
CCNF-201ENST00000293968 KIF16BQ96L93 1317 aa18.36■□□□□ 0.53
CCNF-201ENST00000293968 TRIM35Q9UPQ4 493 aa18.36■□□□□ 0.53
CCNF-201ENST00000293968 HMOX1P09601 288 aa18.35■□□□□ 0.53
CCNF-201ENST00000293968 HSP90AA2PQ14568 343 aaPredicted RBP18.35■□□□□ 0.53
CCNF-201ENST00000293968 SMC5Q8IY18 1101 aa18.35■□□□□ 0.53
CCNF-201ENST00000293968 ESPNB1AK53 854 aa18.35■□□□□ 0.53
CCNF-201ENST00000293968 SPHKAPQ2M3C7 1700 aa18.35■□□□□ 0.53
CCNF-201ENST00000293968 CT47B1P0C2W7 299 aaPredicted RBP18.34■□□□□ 0.53
CCNF-201ENST00000293968 ZBTB40Q9NUA8 1239 aa18.34■□□□□ 0.53
CCNF-201ENST00000293968 CLCN1P35523 988 aa18.34■□□□□ 0.53
CCNF-201ENST00000293968 NUCB1Q02818 461 aa18.33■□□□□ 0.52
CCNF-201ENST00000293968 ZNF518AQ6AHZ1 1483 aa18.33■□□□□ 0.52
CCNF-201ENST00000293968 DDX49Q9Y6V7 483 aaKnown RBP18.33■□□□□ 0.52
CCNF-201ENST00000293968 FANCAO15360 1455 aa18.33■□□□□ 0.52
CCNF-201ENST00000293968 RTEL1-TNFRSF6BF6WH68 1400 aa18.32■□□□□ 0.52
CCNF-201ENST00000293968 PRKAR2BP31323 418 aa18.32■□□□□ 0.52
CCNF-201ENST00000293968 TERF2IPQ9NYB0 399 aa18.32■□□□□ 0.52
CCNF-201ENST00000293968 CEP152O94986 1710 aa18.32■□□□□ 0.52
CCNF-201ENST00000293968 SSFA2P28290 1259 aa18.31■□□□□ 0.52
CCNF-201ENST00000293968 VSIG10Q8N0Z9 540 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms