RNA–Protein interactions for RNA: ENSMUST00000173369.1

Trim39-205, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

TSL 1 (best) BASIC

Gene Trim39, Length 2,914 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-205ENSMUST00000173369 Arhgef28P97433 1693 aa11.67□□□□□ -0.54
Trim39-205ENSMUST00000173369 Hspa1lP16627 641 aa11.67□□□□□ -0.54
Trim39-205ENSMUST00000173369 Lrrc7Q80TE7 1490 aa11.67□□□□□ -0.54
Trim39-205ENSMUST00000173369 Ddx17Q501J6 650 aaKnown RBP11.66□□□□□ -0.54
Trim39-205ENSMUST00000173369 Med1Q925J9 1575 aa11.66□□□□□ -0.54
Trim39-205ENSMUST00000173369 PalldQ9ET54 1408 aa11.66□□□□□ -0.54
Trim39-205ENSMUST00000173369 Gm10563F6WIE4 79 aa11.66□□□□□ -0.54
Trim39-205ENSMUST00000173369 Myom1Q62234 1667 aaKnown RBP11.66□□□□□ -0.54
Trim39-205ENSMUST00000173369 Iqgap1Q9JKF1 1657 aaKnown RBP11.66□□□□□ -0.54
Trim39-205ENSMUST00000173369 Phlpp1Q8CHE4 1687 aa11.66□□□□□ -0.54
Trim39-205ENSMUST00000173369 RalgapbQ8BQZ4 1484 aa11.65□□□□□ -0.54
Trim39-205ENSMUST00000173369 Q3UJC8 639 aa11.65□□□□□ -0.54
Trim39-205ENSMUST00000173369 Zc3h13E9Q784 1729 aaKnown RBP11.65□□□□□ -0.54
Trim39-205ENSMUST00000173369 Rock2P70336 1388 aa11.64□□□□□ -0.55
Trim39-205ENSMUST00000173369 Tns3Q5SSZ5 1440 aa11.63□□□□□ -0.55
Trim39-205ENSMUST00000173369 Nrxn3Q6P9K9 1571 aa11.63□□□□□ -0.55
Trim39-205ENSMUST00000173369 Gemin5Q8BX17 1502 aaKnown RBP11.63□□□□□ -0.55
Trim39-205ENSMUST00000173369 GnpatP98192 678 aa11.63□□□□□ -0.55
Trim39-205ENSMUST00000173369 Plxnc1Q9QZC2 1574 aa11.62□□□□□ -0.55
Trim39-205ENSMUST00000173369 Cpsf1Q9EPU4 1441 aaKnown RBP11.61□□□□□ -0.55
Trim39-205ENSMUST00000173369 Exosc9Q9JHI7 438 aaKnown RBP11.61□□□□□ -0.55
Trim39-205ENSMUST00000173369 Slit3Q9WVB4 1523 aa11.61□□□□□ -0.55
Trim39-205ENSMUST00000173369 Mbd5B1AYB6 1498 aa11.61□□□□□ -0.55
Trim39-205ENSMUST00000173369 Atf3Q60765 181 aa11.6□□□□□ -0.55
Trim39-205ENSMUST00000173369 Cdk19Q8BWD8 501 aa11.6□□□□□ -0.55
Trim39-205ENSMUST00000173369 Gli3Q61602 1583 aa11.6□□□□□ -0.55
Trim39-205ENSMUST00000173369 Cdk5rap2Q8K389 1822 aa11.6□□□□□ -0.55
Trim39-205ENSMUST00000173369 Supt5hO55201 1082 aaKnown RBP11.59□□□□□ -0.55
Trim39-205ENSMUST00000173369 Idi1P58044 227 aa11.59□□□□□ -0.55
Trim39-205ENSMUST00000173369 Kdm5aQ3UXZ9 1690 aa11.59□□□□□ -0.55
Trim39-205ENSMUST00000173369 Tubgcp6G5E8P0 1769 aa11.58□□□□□ -0.56
Trim39-205ENSMUST00000173369 Brinp3Q499E0 766 aa11.58□□□□□ -0.56
Trim39-205ENSMUST00000173369 Setd1aE9PYH6 1716 aa11.57□□□□□ -0.56
Trim39-205ENSMUST00000173369 Aplp2Q06335 707 aa11.57□□□□□ -0.56
Trim39-205ENSMUST00000173369 Cep152A2AUM9 1736 aaKnown RBP11.56□□□□□ -0.56
Trim39-205ENSMUST00000173369 Gimap5Q8BWF2 308 aa11.55□□□□□ -0.56
Trim39-205ENSMUST00000173369 Pik3c2bE9QAN8 1632 aa11.54□□□□□ -0.56
Trim39-205ENSMUST00000173369 CenpjQ569L8 1344 aa11.54□□□□□ -0.56
Trim39-205ENSMUST00000173369 Ttll13A4Q9F6 804 aa11.54□□□□□ -0.56
Trim39-205ENSMUST00000173369 Nphp4P59240 1425 aa11.54□□□□□ -0.56
Trim39-205ENSMUST00000173369 Pik3r4Q8VD65 1358 aa11.54□□□□□ -0.56
Trim39-205ENSMUST00000173369 Ift172Q6VH22 1749 aa11.53□□□□□ -0.56
Trim39-205ENSMUST00000173369 Gsto1O09131 240 aa11.53□□□□□ -0.56
Trim39-205ENSMUST00000173369 Thsd7aQ69ZU6 1645 aa11.53□□□□□ -0.56
Trim39-205ENSMUST00000173369 Slc35g1Q8BY79 368 aa11.53□□□□□ -0.56
Trim39-205ENSMUST00000173369 Ap3b2Q9JME5 1082 aa11.52□□□□□ -0.57
Trim39-205ENSMUST00000173369 Tom1O88746 492 aa11.51□□□□□ -0.57
Trim39-205ENSMUST00000173369 Acsbg1Q99PU5 721 aa11.51□□□□□ -0.57
Trim39-205ENSMUST00000173369 Smim5Q8BT42 78 aa11.5□□□□□ -0.57
Trim39-205ENSMUST00000173369 Abca14E9Q8F8 1683 aa11.5□□□□□ -0.57
Trim39-205ENSMUST00000173369 Stard8Q8K031 1019 aa11.49□□□□□ -0.57
Trim39-205ENSMUST00000173369 Farp2Q91VS8 1065 aa11.49□□□□□ -0.57
Trim39-205ENSMUST00000173369 Cps1Q8C196 1500 aa11.49□□□□□ -0.57
Trim39-205ENSMUST00000173369 Pknox2Q8BG99 474 aa11.49□□□□□ -0.57
Trim39-205ENSMUST00000173369 Inpp5dQ9ES52 1191 aa11.49□□□□□ -0.57
Trim39-205ENSMUST00000173369 C3P01027 1663 aa11.49□□□□□ -0.57
Trim39-205ENSMUST00000173369 Pank3Q8R2W9 370 aa11.49□□□□□ -0.57
Trim39-205ENSMUST00000173369 Cwc22Q8C5N3 908 aaKnown RBP11.48□□□□□ -0.57
Trim39-205ENSMUST00000173369 Usp32F8VPZ3 1604 aa11.48□□□□□ -0.57
Trim39-205ENSMUST00000173369 Nwd1A6H603 1563 aa11.48□□□□□ -0.57
Trim39-205ENSMUST00000173369 Ggt6Q6PDE7 497 aa11.47□□□□□ -0.57
Trim39-205ENSMUST00000173369 Rreb1Q3UH06 1700 aaKnown RBP11.47□□□□□ -0.57
Trim39-205ENSMUST00000173369 Qtrt2B8ZXI1 415 aa11.47□□□□□ -0.57
Trim39-205ENSMUST00000173369 MaddQ80U28 1577 aa11.47□□□□□ -0.57
Trim39-205ENSMUST00000173369 Col14a1Q80X19 1797 aa11.47□□□□□ -0.57
Trim39-205ENSMUST00000173369 Ripply1Q2WG77 201 aa11.46□□□□□ -0.57
Trim39-205ENSMUST00000173369 Anks4bQ8K3X6 423 aa11.46□□□□□ -0.57
Trim39-205ENSMUST00000173369 NalcnQ8BXR5 1738 aa11.46□□□□□ -0.57
Trim39-205ENSMUST00000173369 Col18a1P39061 1774 aa11.46□□□□□ -0.57
Trim39-205ENSMUST00000173369 Plekhg1F6S200 1446 aa11.46□□□□□ -0.58
Trim39-205ENSMUST00000173369 Map3k19E9Q3S4 1311 aa11.46□□□□□ -0.58
Trim39-205ENSMUST00000173369 Sipa1l1Q8C0T5 1782 aa11.45□□□□□ -0.58
Trim39-205ENSMUST00000173369 Lmtk3Q5XJV6 1424 aa11.45□□□□□ -0.58
Trim39-205ENSMUST00000173369 Arap3Q8R5G7 1538 aa11.44□□□□□ -0.58
Trim39-205ENSMUST00000173369 Fbxo41Q6NS60 873 aa11.44□□□□□ -0.58
Trim39-205ENSMUST00000173369 Kif16bB1AVY7 1312 aa11.44□□□□□ -0.58
Trim39-205ENSMUST00000173369 Kif24Q6NWW5 1356 aa11.43□□□□□ -0.58
Trim39-205ENSMUST00000173369 Fyb1O35601 819 aa11.43□□□□□ -0.58
Trim39-205ENSMUST00000173369 Dcaf11Q91VU6 549 aa11.43□□□□□ -0.58
Trim39-205ENSMUST00000173369 Sipa1l2Q80TE4 1722 aa11.43□□□□□ -0.58
Trim39-205ENSMUST00000173369 DnmbpQ6TXD4 1580 aa11.43□□□□□ -0.58
Trim39-205ENSMUST00000173369 Nyap1Q6PFX7 833 aa11.43□□□□□ -0.58
Trim39-205ENSMUST00000173369 Ddx54Q8K4L0 874 aaKnown RBP11.43□□□□□ -0.58
Trim39-205ENSMUST00000173369 PrxO55103 1391 aa11.43□□□□□ -0.58
Trim39-205ENSMUST00000173369 Fgd1P52734 960 aa11.42□□□□□ -0.58
Trim39-205ENSMUST00000173369 Csrnp3P59055 597 aa11.42□□□□□ -0.58
Trim39-205ENSMUST00000173369 Q8BT18 775 aa11.42□□□□□ -0.58
Trim39-205ENSMUST00000173369 Itsn2Q9Z0R6 1659 aa11.42□□□□□ -0.58
Trim39-205ENSMUST00000173369 Fam184bQ0KK56 942 aa11.42□□□□□ -0.58
Trim39-205ENSMUST00000173369 Sall2Q9QX96 1004 aa11.42□□□□□ -0.58
Trim39-205ENSMUST00000173369 Kif20bQ80WE4 1774 aaKnown RBP11.42□□□□□ -0.58
Trim39-205ENSMUST00000173369 Birc3O08863 600 aa11.41□□□□□ -0.58
Trim39-205ENSMUST00000173369 Slc5a4bQ91ZP4 660 aa11.41□□□□□ -0.58
Trim39-205ENSMUST00000173369 NrdcQ8BHG1 1161 aa11.41□□□□□ -0.58
Trim39-205ENSMUST00000173369 Tmem2Q5FWI3 1383 aa11.41□□□□□ -0.58
Trim39-205ENSMUST00000173369 NinlQ6ZQ12 1394 aa11.41□□□□□ -0.58
Trim39-205ENSMUST00000173369 Gm21190A0A0G2JGJ6 266 aa11.4□□□□□ -0.58
Trim39-205ENSMUST00000173369 Kcna6Q61923 529 aa11.4□□□□□ -0.58
Trim39-205ENSMUST00000173369 Dixdc1Q80Y83 711 aa11.4□□□□□ -0.58
Trim39-205ENSMUST00000173369 NktrP30415 1453 aa11.4□□□□□ -0.58
Retrieved 100 of 22,080 RNA–protein pairs in 161.7 ms