RNA–Protein interactions for RNA: ENSMUST00000109477.1

Ccdc88a-202, Transcript of Girdin, mousemouse

TSL 2 BASIC

Gene Ccdc88a, Length 1,716 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-202ENSMUST00000109477 PrxO55103 1391 aa29.03■■■□□ 2.24
Ccdc88a-202ENSMUST00000109477 Arap3Q8R5G7 1538 aa29■■■□□ 2.23
Ccdc88a-202ENSMUST00000109477 Utp14aQ640M1 767 aaKnown RBP28.99■■■□□ 2.23
Ccdc88a-202ENSMUST00000109477 Tmf1B9EKI3 1091 aa28.97■■■□□ 2.23
Ccdc88a-202ENSMUST00000109477 Pank3Q8R2W9 370 aa28.97■■■□□ 2.23
Ccdc88a-202ENSMUST00000109477 Thsd7aQ69ZU6 1645 aa28.97■■■□□ 2.23
Ccdc88a-202ENSMUST00000109477 Plekhg1F6S200 1446 aa28.97■■■□□ 2.23
Ccdc88a-202ENSMUST00000109477 Cep170bQ80U49 1574 aa28.97■■■□□ 2.23
Ccdc88a-202ENSMUST00000109477 CenpjQ569L8 1344 aa28.96■■■□□ 2.23
Ccdc88a-202ENSMUST00000109477 HnrnpmQ9D0E1 729 aaKnown RBP28.95■■■□□ 2.23
Ccdc88a-202ENSMUST00000109477 Gm16486A0A1D5RMD1 1434 aa28.95■■■□□ 2.22
Ccdc88a-202ENSMUST00000109477 Slc4a1apE9PX68 744 aa28.94■■■□□ 2.22
Ccdc88a-202ENSMUST00000109477 InsrP15208 1372 aa28.92■■■□□ 2.22
Ccdc88a-202ENSMUST00000109477 Cps1Q8C196 1500 aa28.92■■■□□ 2.22
Ccdc88a-202ENSMUST00000109477 Fam184bQ0KK56 942 aa28.91■■■□□ 2.22
Ccdc88a-202ENSMUST00000109477 Inpp5dQ9ES52 1191 aa28.89■■■□□ 2.22
Ccdc88a-202ENSMUST00000109477 Abca14E9Q8F8 1683 aa28.89■■■□□ 2.22
Ccdc88a-202ENSMUST00000109477 Zscan10Q3URR7 782 aa28.87■■■□□ 2.21
Ccdc88a-202ENSMUST00000109477 Tns3Q5SSZ5 1440 aa28.85■■■□□ 2.21
Ccdc88a-202ENSMUST00000109477 Exoc6Q8R313 802 aa28.85■■■□□ 2.21
Ccdc88a-202ENSMUST00000109477 Gli3Q61602 1583 aa28.84■■■□□ 2.21
Ccdc88a-202ENSMUST00000109477 Wwc2Q6NXJ0 1187 aa28.83■■■□□ 2.21
Ccdc88a-202ENSMUST00000109477 Nwd1A6H603 1563 aa28.82■■■□□ 2.2
Ccdc88a-202ENSMUST00000109477 Mink1Q9JM52 1308 aa28.81■■■□□ 2.2
Ccdc88a-202ENSMUST00000109477 Mrs2Q5NCE8 434 aa28.79■■■□□ 2.2
Ccdc88a-202ENSMUST00000109477 Atp2b2Q9R0K7 1198 aa28.79■■■□□ 2.2
Ccdc88a-202ENSMUST00000109477 Stra8P70278 393 aa28.78■■■□□ 2.2
Ccdc88a-202ENSMUST00000109477 Anp32bQ9EST5 272 aaKnown RBP28.77■■■□□ 2.2
Ccdc88a-202ENSMUST00000109477 Tmem94Q7TSH8 1360 aa28.75■■■□□ 2.19
Ccdc88a-202ENSMUST00000109477 Usp32F8VPZ3 1604 aa28.74■■■□□ 2.19
Ccdc88a-202ENSMUST00000109477 Col18a1P39061 1774 aa28.73■■■□□ 2.19
Ccdc88a-202ENSMUST00000109477 PnisrA2AJT4 805 aaKnown RBP28.73■■■□□ 2.19
Ccdc88a-202ENSMUST00000109477 Cnga1P29974 684 aa28.73■■■□□ 2.19
Ccdc88a-202ENSMUST00000109477 Exosc9Q9JHI7 438 aaKnown RBP28.72■■■□□ 2.19
Ccdc88a-202ENSMUST00000109477 Q3UJC8 639 aa28.72■■■□□ 2.19
Ccdc88a-202ENSMUST00000109477 NktrP30415 1453 aa28.71■■■□□ 2.19
Ccdc88a-202ENSMUST00000109477 Unc13bQ9Z1N9 1602 aa28.7■■■□□ 2.19
Ccdc88a-202ENSMUST00000109477 Slain2Q8CI08 581 aa28.7■■■□□ 2.19
Ccdc88a-202ENSMUST00000109477 Gsto1O09131 240 aa28.69■■■□□ 2.18
Ccdc88a-202ENSMUST00000109477 Amigo3Q8C2S7 508 aa28.69■■■□□ 2.18
Ccdc88a-202ENSMUST00000109477 Rreb1Q3UH06 1700 aaKnown RBP28.68■■■□□ 2.18
Ccdc88a-202ENSMUST00000109477 Cdk19Q8BWD8 501 aa28.68■■■□□ 2.18
Ccdc88a-202ENSMUST00000109477 NrdcQ8BHG1 1161 aa28.67■■■□□ 2.18
Ccdc88a-202ENSMUST00000109477 Kif20bQ80WE4 1774 aaKnown RBP28.67■■■□□ 2.18
Ccdc88a-202ENSMUST00000109477 Col14a1Q80X19 1797 aa28.66■■■□□ 2.18
Ccdc88a-202ENSMUST00000109477 Slc4a2P13808 1237 aaKnown RBP28.64■■■□□ 2.18
Ccdc88a-202ENSMUST00000109477 Gprasp1Q5U4C1 1347 aa28.63■■■□□ 2.17
Ccdc88a-202ENSMUST00000109477 FanciQ8K368 1330 aa28.63■■■□□ 2.17
Ccdc88a-202ENSMUST00000109477 Gm10563F6WIE4 79 aa28.62■■■□□ 2.17
Ccdc88a-202ENSMUST00000109477 Evi5lH3BKQ3 813 aa28.62■■■□□ 2.17
Ccdc88a-202ENSMUST00000109477 Dcaf11Q91VU6 549 aa28.62■■■□□ 2.17
Ccdc88a-202ENSMUST00000109477 Nrxn1Q9CS84 1514 aa28.62■■■□□ 2.17
Ccdc88a-202ENSMUST00000109477 D430041D05RikF6ZGR6 1678 aa28.61■■■□□ 2.17
Ccdc88a-202ENSMUST00000109477 Kif7B7ZNG0 1348 aa28.61■■■□□ 2.17
Ccdc88a-202ENSMUST00000109477 Pik3c2bE9QAN8 1632 aa28.61■■■□□ 2.17
Ccdc88a-202ENSMUST00000109477 NalcnQ8BXR5 1738 aa28.61■■■□□ 2.17
Ccdc88a-202ENSMUST00000109477 Tex14Q7M6U3 1450 aa28.58■■■□□ 2.17
Ccdc88a-202ENSMUST00000109477 C3P01027 1663 aa28.58■■■□□ 2.17
Ccdc88a-202ENSMUST00000109477 Zranb1Q7M760 708 aa28.57■■■□□ 2.16
Ccdc88a-202ENSMUST00000109477 Rpgrip1lQ8CG73 1264 aa28.57■■■□□ 2.16
Ccdc88a-202ENSMUST00000109477 Rab3gap2Q8BMG7 1366 aa28.57■■■□□ 2.16
Ccdc88a-202ENSMUST00000109477 Adgrl1Q80TR1 1466 aa28.57■■■□□ 2.16
Ccdc88a-202ENSMUST00000109477 Tnrc6bQ8BKI2 1810 aaKnown RBP28.56■■■□□ 2.16
Ccdc88a-202ENSMUST00000109477 KdrP35918 1367 aa28.55■■■□□ 2.16
Ccdc88a-202ENSMUST00000109477 Ppp2r1aQ76MZ3 589 aa28.55■■■□□ 2.16
Ccdc88a-202ENSMUST00000109477 C5P06684 1680 aa28.54■■■□□ 2.16
Ccdc88a-202ENSMUST00000109477 Sirt1Q923E4 737 aa28.53■■■□□ 2.16
Ccdc88a-202ENSMUST00000109477 Als2Q920R0 1651 aa28.52■■■□□ 2.16
Ccdc88a-202ENSMUST00000109477 Brinp3Q499E0 766 aa28.52■■■□□ 2.16
Ccdc88a-202ENSMUST00000109477 Prdm10Q3UTQ7 1184 aa28.49■■■□□ 2.15
Ccdc88a-202ENSMUST00000109477 Q7TT23 1179 aa28.47■■■□□ 2.15
Ccdc88a-202ENSMUST00000109477 Idi1P58044 227 aa28.46■■■□□ 2.15
Ccdc88a-202ENSMUST00000109477 Zscan21Q07231 555 aa28.46■■■□□ 2.15
Ccdc88a-202ENSMUST00000109477 Atf3Q60765 181 aa28.46■■■□□ 2.15
Ccdc88a-202ENSMUST00000109477 Map3k19E9Q3S4 1311 aa28.46■■■□□ 2.15
Ccdc88a-202ENSMUST00000109477 Sipa1l2Q80TE4 1722 aa28.45■■■□□ 2.15
Ccdc88a-202ENSMUST00000109477 PtpruB1AUH1 1446 aa28.45■■■□□ 2.14
Ccdc88a-202ENSMUST00000109477 N4bp2F8VQG7 1678 aaKnown RBP28.45■■■□□ 2.14
Ccdc88a-202ENSMUST00000109477 Idi2Q8BFZ6 227 aa28.43■■■□□ 2.14
Ccdc88a-202ENSMUST00000109477 NinlQ6ZQ12 1394 aa28.42■■■□□ 2.14
Ccdc88a-202ENSMUST00000109477 Znf316Q6PGE4 1016 aa28.42■■■□□ 2.14
Ccdc88a-202ENSMUST00000109477 Iqsec2Q5DU25 1478 aa28.41■■■□□ 2.14
Ccdc88a-202ENSMUST00000109477 Abcc10Q8R4P9 1501 aa28.39■■■□□ 2.14
Ccdc88a-202ENSMUST00000109477 Hspa1lP16627 641 aa28.38■■■□□ 2.13
Ccdc88a-202ENSMUST00000109477 Sox12Q04890 314 aa28.38■■■□□ 2.13
Ccdc88a-202ENSMUST00000109477 Atf7ipQ7TT18 1306 aa28.38■■■□□ 2.13
Ccdc88a-202ENSMUST00000109477 Nlrp6Q91WS2 869 aa28.37■■■□□ 2.13
Ccdc88a-202ENSMUST00000109477 Tmem2Q5FWI3 1383 aa28.35■■■□□ 2.13
Ccdc88a-202ENSMUST00000109477 Znf710Q3U288 666 aa28.35■■■□□ 2.13
Ccdc88a-202ENSMUST00000109477 Anks4bQ8K3X6 423 aa28.35■■■□□ 2.13
Ccdc88a-202ENSMUST00000109477 NgefQ8CHT1 710 aa28.35■■■□□ 2.13
Ccdc88a-202ENSMUST00000109477 Bcl11bQ99PV8 884 aa28.35■■■□□ 2.13
Ccdc88a-202ENSMUST00000109477 CatipB9EKE5 520 aa28.34■■■□□ 2.13
Ccdc88a-202ENSMUST00000109477 Mon2Q80TL7 1715 aa28.33■■■□□ 2.13
Ccdc88a-202ENSMUST00000109477 Kcna6Q61923 529 aa28.32■■■□□ 2.12
Ccdc88a-202ENSMUST00000109477 Ap3b2Q9JME5 1082 aa28.32■■■□□ 2.12
Ccdc88a-202ENSMUST00000109477 Kif1aP33173 1695 aa28.32■■■□□ 2.12
Ccdc88a-202ENSMUST00000109477 Cald1E9QA15 768 aaKnown RBP28.32■■■□□ 2.12
Ccdc88a-202ENSMUST00000109477 IbtkQ6ZPR6 1352 aaKnown RBP28.31■■■□□ 2.12
Ccdc88a-202ENSMUST00000109477 Wnk3Q80XP9 1757 aa28.3■■■□□ 2.12
Retrieved 100 of 22,080 RNA–protein pairs in 16.7 ms