RNA–Protein interactions for RNA: ENSMUST00000076265.12

Upf3b-201, Transcript of UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Upf3b, Length 2,344 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3b-201ENSMUST00000076265 Ccdc102aQ3TMW1 549 aa11.69□□□□□ -0.54
Upf3b-201ENSMUST00000076265 Pdap1Q3UHX2 181 aaKnown RBP11.69□□□□□ -0.54
Upf3b-201ENSMUST00000076265 Exosc9Q9JHI7 438 aaKnown RBP11.68□□□□□ -0.54
Upf3b-201ENSMUST00000076265 PtprtQ99M80 1454 aa11.68□□□□□ -0.54
Upf3b-201ENSMUST00000076265 Arhgef5E9Q7D5 1581 aa11.68□□□□□ -0.54
Upf3b-201ENSMUST00000076265 Mink1Q9JM52 1308 aa11.68□□□□□ -0.54
Upf3b-201ENSMUST00000076265 Wee1P47810 646 aa11.68□□□□□ -0.54
Upf3b-201ENSMUST00000076265 Gm21083A0A0G2JFD5 256 aa11.67□□□□□ -0.54
Upf3b-201ENSMUST00000076265 Gm21149A0A0G2JFY7 255 aa11.67□□□□□ -0.54
Upf3b-201ENSMUST00000076265 Gm21190A0A0G2JGJ6 266 aa11.67□□□□□ -0.54
Upf3b-201ENSMUST00000076265 Speer4cG3UXD1 256 aa11.67□□□□□ -0.54
Upf3b-201ENSMUST00000076265 Gm17019K7N6W5 255 aa11.67□□□□□ -0.54
Upf3b-201ENSMUST00000076265 Dnmt1P13864 1620 aaKnown RBP11.67□□□□□ -0.54
Upf3b-201ENSMUST00000076265 Cul9Q80TT8 1865 aa11.66□□□□□ -0.54
Upf3b-201ENSMUST00000076265 VdrP48281 422 aa11.66□□□□□ -0.54
Upf3b-201ENSMUST00000076265 U2af1Q9D883 239 aaKnown RBP11.66□□□□□ -0.54
Upf3b-201ENSMUST00000076265 Abcc2Q8VI47 1543 aa11.66□□□□□ -0.54
Upf3b-201ENSMUST00000076265 Znf335A2A5K6 1337 aa11.66□□□□□ -0.54
Upf3b-201ENSMUST00000076265 Soga1E1U8D0 1418 aa11.66□□□□□ -0.54
Upf3b-201ENSMUST00000076265 PxdnQ3UQ28 1475 aa11.66□□□□□ -0.54
Upf3b-201ENSMUST00000076265 EprsQ8CGC7 1512 aaKnown RBP11.65□□□□□ -0.54
Upf3b-201ENSMUST00000076265 Q3TQI7 289 aaKnown RBP11.65□□□□□ -0.54
Upf3b-201ENSMUST00000076265 SelenovD3YXG1 328 aa11.65□□□□□ -0.54
Upf3b-201ENSMUST00000076265 Mrs2Q5NCE8 434 aa11.65□□□□□ -0.54
Upf3b-201ENSMUST00000076265 Slc39a13Q8BZH0 361 aa11.65□□□□□ -0.54
Upf3b-201ENSMUST00000076265 Rrp9Q91WM3 475 aaKnown RBP11.65□□□□□ -0.54
Upf3b-201ENSMUST00000076265 Stk25Q9Z2W1 426 aa11.65□□□□□ -0.54
Upf3b-201ENSMUST00000076265 WizO88286 1684 aaKnown RBP11.64□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Neo1P97798 1493 aa11.64□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Chd1P40201 1711 aa11.64□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Cnga1P29974 684 aa11.64□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Erich4Q3UNU4 136 aa11.64□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Tmcc2Q80W04 706 aa11.64□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Slx1bQ8BX32 270 aa11.64□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Adamts12Q811B3 1600 aa11.63□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Abca16E9PWJ7 1678 aa11.63□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Rapgef2Q8CHG7 1496 aa11.63□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Pcmtd1P59913 357 aa11.63□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Gm9758Q80ZT2 255 aa11.63□□□□□ -0.55
Upf3b-201ENSMUST00000076265 PdiltQ9DAN1 588 aa11.63□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Borcs6Q9D6W8 360 aa11.63□□□□□ -0.55
Upf3b-201ENSMUST00000076265 TchhA0A0B4J1F9 1599 aa11.62□□□□□ -0.55
Upf3b-201ENSMUST00000076265 BdnfP21237 249 aa11.62□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Gm21680A0A0G2JGR8 267 aa11.61□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Gm1979E9QAN3 267 aa11.61□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Gm21671G3UY31 267 aa11.61□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Skiv2lQ6NZR5 1244 aa11.61□□□□□ -0.55
Upf3b-201ENSMUST00000076265 March6Q6ZQ89 909 aa11.61□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Pif1Q80SX8 650 aa11.61□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Gm14025A2AP89 1413 aa11.61□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Map3k4O08648 1597 aa11.61□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Cfap70D3YVL2 1141 aa11.6□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Carmil1Q6EDY6 1374 aa11.6□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Ccdc181Q80ZU5 509 aa11.6□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Galntl5Q9D4M9 431 aa11.6□□□□□ -0.55
Upf3b-201ENSMUST00000076265 BC005561E9Q5E2 1589 aa11.6□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Ccdc173A0JLY1 547 aa11.59□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Rad51ap2G3UW63 976 aa11.59□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Lire1P11260 357 aa11.59□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Hoxa2P31245 372 aa11.59□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Vps33bP59016 617 aa11.59□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Fam13aQ8BGI4 693 aa11.59□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Pprc1Q6NZN1 1644 aa11.59□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Pus7B7ZNL8 666 aaKnown RBP11.59□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Pdcl3Q8BVF2 240 aa11.59□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Atg7Q9D906 698 aa11.59□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Map3k1P53349 1493 aa11.59□□□□□ -0.55
Upf3b-201ENSMUST00000076265 Ms4a1P19437 291 aa11.58□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Nme8Q715T0 586 aa11.58□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Lonrf3Q9D4H7 753 aa11.58□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Phf14Q9D4H9 881 aa11.58□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Birc3O08863 600 aa11.58□□□□□ -0.56
Upf3b-201ENSMUST00000076265 R3hcc1Q8BSI6 488 aa11.58□□□□□ -0.56
Upf3b-201ENSMUST00000076265 PtmsQ9D0J8 101 aaKnown RBP11.58□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Slx4Q6P1D7 1565 aa11.57□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Jph4Q80WT0 628 aa11.57□□□□□ -0.56
Upf3b-201ENSMUST00000076265 4930572O03RikQ8C5Y0 211 aa11.57□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Rpap1Q80TE0 1409 aa11.57□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Arhgap35Q91YM2 1499 aa11.57□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Krt18P05784 423 aa11.57□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Q8C4P0 716 aa11.57□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Kdm4cQ8VCD7 1054 aa11.57□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Adam7O35227 789 aa11.56□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Ppm1fQ8CGA0 452 aa11.56□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Tma7Q8K003 64 aaKnown RBP11.56□□□□□ -0.56
Upf3b-201ENSMUST00000076265 AticQ9CWJ9 592 aaKnown RBP11.56□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Capn10Q9ESK3 666 aa11.56□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Setbp1Q9Z180 1582 aa11.56□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Npas4Q8BGD7 802 aa11.55□□□□□ -0.56
Upf3b-201ENSMUST00000076265 TbceQ8CIV8 524 aa11.55□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Otud6bQ8K2H2 294 aa11.55□□□□□ -0.56
Upf3b-201ENSMUST00000076265 OptnQ8K3K8 584 aa11.55□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Gm7298A0A0N4SVU1 1476 aa11.55□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Cep120Q7TSG1 988 aa11.55□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Eif4g1Q6NZJ6 1600 aaKnown RBP11.54□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Mllt3A2AM29 569 aa11.54□□□□□ -0.56
Upf3b-201ENSMUST00000076265 SnrkQ8VDU5 748 aa11.54□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Gm10093D3YYI8 482 aa11.54□□□□□ -0.56
Upf3b-201ENSMUST00000076265 Hdac1O09106 482 aaKnown RBP11.54□□□□□ -0.56
Upf3b-201ENSMUST00000076265 AppP12023 770 aa11.54□□□□□ -0.56
Retrieved 100 of 22,080 RNA–protein pairs in 66.6 ms