Protein–RNA interactions for Protein: Q80SX8

Pif1, ATP-dependent DNA helicase PIF1, mousemouse

Predictions only

Length 650 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pif1Q80SX8 Gm25239-201ENSMUST00000174915 86 ntBASIC35.82■■■■□ 3.32
Pif1Q80SX8 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC33.21■■■□□ 2.91
Pif1Q80SX8 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
Pif1Q80SX8 Gm15042-201ENSMUST00000120212 883 ntBASIC31.13■■■□□ 2.57
Pif1Q80SX8 Gm24109-201ENSMUST00000175489 103 ntBASIC31.11■■■□□ 2.57
Pif1Q80SX8 Gm15045-201ENSMUST00000117359 883 ntBASIC30.38■■■□□ 2.45
Pif1Q80SX8 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Pif1Q80SX8 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
Pif1Q80SX8 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
Pif1Q80SX8 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Pif1Q80SX8 Gm23366-201ENSMUST00000175022 89 ntBASIC29.91■■■□□ 2.38
Pif1Q80SX8 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
Pif1Q80SX8 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
Pif1Q80SX8 AC153911.1-202ENSMUST00000218534 1034 ntBASIC29.1■■■□□ 2.25
Pif1Q80SX8 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC29.1■■■□□ 2.25
Pif1Q80SX8 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
Pif1Q80SX8 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC28.84■■■□□ 2.21
Pif1Q80SX8 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC28.82■■■□□ 2.2
Pif1Q80SX8 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC28.81■■■□□ 2.2
Pif1Q80SX8 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Pif1Q80SX8 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC28.5■■■□□ 2.15
Pif1Q80SX8 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
Pif1Q80SX8 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Pif1Q80SX8 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
Pif1Q80SX8 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC28.36■■■□□ 2.13
Pif1Q80SX8 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC28.35■■■□□ 2.13
Pif1Q80SX8 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Pif1Q80SX8 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.12
Pif1Q80SX8 Gm25238-201ENSMUST00000174914 89 ntBASIC28.32■■■□□ 2.12
Pif1Q80SX8 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Pif1Q80SX8 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC28.04■■■□□ 2.08
Pif1Q80SX8 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC27.99■■■□□ 2.07
Pif1Q80SX8 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC27.8■■■□□ 2.04
Pif1Q80SX8 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC27.77■■■□□ 2.04
Pif1Q80SX8 Psd-208ENSMUST00000224556 2034 ntBASIC27.74■■■□□ 2.03
Pif1Q80SX8 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
Pif1Q80SX8 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
Pif1Q80SX8 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC27.57■■■□□ 2
Pif1Q80SX8 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC27.53■■■□□ 2
Pif1Q80SX8 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Pif1Q80SX8 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC27.46■■□□□ 1.99
Pif1Q80SX8 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC27.44■■□□□ 1.98
Pif1Q80SX8 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC27.43■■□□□ 1.98
Pif1Q80SX8 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC27.25■■□□□ 1.95
Pif1Q80SX8 Gm25262-201ENSMUST00000174934 133 ntBASIC27.25■■□□□ 1.95
Pif1Q80SX8 Gm27325-201ENSMUST00000175467 74 ntBASIC27.24■■□□□ 1.95
Pif1Q80SX8 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC27.23■■□□□ 1.95
Pif1Q80SX8 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
Pif1Q80SX8 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Pif1Q80SX8 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Pif1Q80SX8 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
Pif1Q80SX8 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
Pif1Q80SX8 Rab21-202ENSMUST00000218831 843 ntBASIC26.87■■□□□ 1.89
Pif1Q80SX8 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Pif1Q80SX8 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Pif1Q80SX8 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC26.83■■□□□ 1.89
Pif1Q80SX8 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC26.81■■□□□ 1.88
Pif1Q80SX8 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC26.76■■□□□ 1.87
Pif1Q80SX8 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC26.74■■□□□ 1.87
Pif1Q80SX8 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC26.74■■□□□ 1.87
Pif1Q80SX8 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
Pif1Q80SX8 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
Pif1Q80SX8 Gm26115-201ENSMUST00000175605 87 ntBASIC26.65■■□□□ 1.86
Pif1Q80SX8 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Pif1Q80SX8 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Pif1Q80SX8 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
Pif1Q80SX8 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC26.53■■□□□ 1.84
Pif1Q80SX8 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC26.53■■□□□ 1.84
Pif1Q80SX8 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Pif1Q80SX8 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Pif1Q80SX8 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC26.48■■□□□ 1.83
Pif1Q80SX8 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Pif1Q80SX8 Gm8109-201ENSMUST00000194076 746 ntBASIC26.46■■□□□ 1.83
Pif1Q80SX8 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC26.46■■□□□ 1.83
Pif1Q80SX8 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
Pif1Q80SX8 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC26.39■■□□□ 1.81
Pif1Q80SX8 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC26.37■■□□□ 1.81
Pif1Q80SX8 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
Pif1Q80SX8 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Pif1Q80SX8 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Pif1Q80SX8 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Pif1Q80SX8 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC26.27■■□□□ 1.8
Pif1Q80SX8 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Pif1Q80SX8 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
Pif1Q80SX8 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC26.15■■□□□ 1.78
Pif1Q80SX8 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Pif1Q80SX8 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC26.14■■□□□ 1.78
Pif1Q80SX8 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
Pif1Q80SX8 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Pif1Q80SX8 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC26.03■■□□□ 1.76
Pif1Q80SX8 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC25.98■■□□□ 1.75
Pif1Q80SX8 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Pif1Q80SX8 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Pif1Q80SX8 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
Pif1Q80SX8 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC25.94■■□□□ 1.74
Pif1Q80SX8 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Pif1Q80SX8 Gm17082-201ENSMUST00000166043 1091 ntBASIC25.91■■□□□ 1.74
Pif1Q80SX8 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC25.9■■□□□ 1.74
Pif1Q80SX8 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC25.88■■□□□ 1.73
Pif1Q80SX8 Gm10524-201ENSMUST00000181931 1893 ntBASIC25.87■■□□□ 1.73
Retrieved 100 of 76,532 protein–RNA pairs in 10.9 ms