RNA–Protein interactions for RNA: ENSMUST00000076265.12

Upf3b-201, Transcript of UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Upf3b, Length 2,344 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3b-201ENSMUST00000076265 Ube2uB1AUC4 352 aa18.68■□□□□ 0.58
Upf3b-201ENSMUST00000076265 DiexfQ8BTT6 772 aaKnown RBP17.66■□□□□ 0.42
Upf3b-201ENSMUST00000076265 Ttbk1Q6PCN3 1308 aa17.06■□□□□ 0.32
Upf3b-201ENSMUST00000076265 CatipB9EKE5 520 aa16.95■□□□□ 0.3
Upf3b-201ENSMUST00000076265 Ehmt2Q9Z148 1263 aaKnown RBP16.92■□□□□ 0.3
Upf3b-201ENSMUST00000076265 ArxO35085 564 aa16.67■□□□□ 0.26
Upf3b-201ENSMUST00000076265 Plppr3Q7TPB0 716 aa16.64■□□□□ 0.25
Upf3b-201ENSMUST00000076265 Rhox8Q6VSS7 320 aa16.37■□□□□ 0.21
Upf3b-201ENSMUST00000076265 Mapk8ip2Q9ERE9 830 aa16.25■□□□□ 0.19
Upf3b-201ENSMUST00000076265 Kcna4Q61423 654 aa16.16■□□□□ 0.18
Upf3b-201ENSMUST00000076265 Ppargc1bQ8VHJ7 1014 aa16.14■□□□□ 0.17
Upf3b-201ENSMUST00000076265 Gm35339A0A140LHH9 1649 aa15.95■□□□□ 0.14
Upf3b-201ENSMUST00000076265 Bcl11aQ9QYE3 773 aa15.88■□□□□ 0.13
Upf3b-201ENSMUST00000076265 Arid3aQ62431 601 aa15.82■□□□□ 0.12
Upf3b-201ENSMUST00000076265 Prdm16A2A935 1275 aa15.77■□□□□ 0.11
Upf3b-201ENSMUST00000076265 NischQ80TM9 1593 aa15.76■□□□□ 0.11
Upf3b-201ENSMUST00000076265 UbtfP25976 765 aaKnown RBP15.74■□□□□ 0.11
Upf3b-201ENSMUST00000076265 Aplp2Q06335 707 aa15.72■□□□□ 0.11
Upf3b-201ENSMUST00000076265 Slc4a1apE9PX68 744 aa15.69■□□□□ 0.1
Upf3b-201ENSMUST00000076265 Taok2Q6ZQ29 1240 aa15.63■□□□□ 0.09
Upf3b-201ENSMUST00000076265 Vsig10D3YX43 558 aa15.52■□□□□ 0.08
Upf3b-201ENSMUST00000076265 Amer1Q7TS75 1132 aa15.52■□□□□ 0.08
Upf3b-201ENSMUST00000076265 Chic1Q8CBW7 227 aa15.49■□□□□ 0.07
Upf3b-201ENSMUST00000076265 Fam71e1A1L3C1 212 aa15.48■□□□□ 0.07
Upf3b-201ENSMUST00000076265 Ncbp3Q8BZR9 615 aaKnown RBP15.44■□□□□ 0.06
Upf3b-201ENSMUST00000076265 Prdm10Q3UTQ7 1184 aa15.43■□□□□ 0.06
Upf3b-201ENSMUST00000076265 Q8BT18 775 aa15.35■□□□□ 0.05
Upf3b-201ENSMUST00000076265 Rsph4aQ8BYM7 716 aa15.27■□□□□ 0.04
Upf3b-201ENSMUST00000076265 Abcc8B2RUS7 1588 aa15.27■□□□□ 0.03
Upf3b-201ENSMUST00000076265 Abcc9P70170 1546 aa15.22■□□□□ 0.03
Upf3b-201ENSMUST00000076265 Gtf3c5Q8R2T8 520 aa15.05■□□□□ 0
Upf3b-201ENSMUST00000076265 Npm2Q80W85 207 aa15.04■□□□□ -0
Upf3b-201ENSMUST00000076265 Myt1Q8CFC2 1127 aa14.98□□□□□ -0.01
Upf3b-201ENSMUST00000076265 Pelp1Q9DBD5 1123 aaKnown RBP14.96□□□□□ -0.01
Upf3b-201ENSMUST00000076265 4930567H17RikQ3V0K5 233 aa14.91□□□□□ -0.02
Upf3b-201ENSMUST00000076265 TimelessQ9R1X4 1197 aa14.89□□□□□ -0.03
Upf3b-201ENSMUST00000076265 Ripply1Q2WG77 201 aa14.88□□□□□ -0.03
Upf3b-201ENSMUST00000076265 Ecm2Q5FW85 670 aa14.84□□□□□ -0.03
Upf3b-201ENSMUST00000076265 BccipQ9CWI3 316 aa14.84□□□□□ -0.03
Upf3b-201ENSMUST00000076265 PrkcshO08795 521 aa14.84□□□□□ -0.03
Upf3b-201ENSMUST00000076265 ScribQ80U72 1612 aa14.75□□□□□ -0.05
Upf3b-201ENSMUST00000076265 Eif5bQ05D44 1216 aaKnown RBP14.74□□□□□ -0.05
Upf3b-201ENSMUST00000076265 Os9Q8K2C7 672 aa14.66□□□□□ -0.06
Upf3b-201ENSMUST00000076265 Pde4cQ3UEI1 686 aa14.63□□□□□ -0.07
Upf3b-201ENSMUST00000076265 Phf23Q8BSN5 401 aa14.6□□□□□ -0.07
Upf3b-201ENSMUST00000076265 HrcG5E8J6 738 aa14.55□□□□□ -0.08
Upf3b-201ENSMUST00000076265 Tshz2Q68FE9 1030 aa14.5□□□□□ -0.09
Upf3b-201ENSMUST00000076265 Ube2q2Q8K2Z8 378 aa14.5□□□□□ -0.09
Upf3b-201ENSMUST00000076265 AcrbpQ3V140 540 aa14.49□□□□□ -0.09
Upf3b-201ENSMUST00000076265 Plcd4Q8K3R3 807 aa14.43□□□□□ -0.1
Upf3b-201ENSMUST00000076265 Igsf3Q6ZQA6 1194 aa14.41□□□□□ -0.1
Upf3b-201ENSMUST00000076265 Dmrt2Q8BG36 561 aa14.4□□□□□ -0.11
Upf3b-201ENSMUST00000076265 Znf326O88291 580 aa14.38□□□□□ -0.11
Upf3b-201ENSMUST00000076265 Zbtb7cQ8VCZ7 619 aa14.36□□□□□ -0.11
Upf3b-201ENSMUST00000076265 Rtn4Q99P72 1162 aaKnown RBP14.36□□□□□ -0.11
Upf3b-201ENSMUST00000076265 Scaf1Q5U4C3 1256 aaKnown RBP14.3□□□□□ -0.12
Upf3b-201ENSMUST00000076265 Fbxo3Q9DC63 480 aa14.3□□□□□ -0.12
Upf3b-201ENSMUST00000076265 Gab3Q8BSM5 595 aa14.29□□□□□ -0.12
Upf3b-201ENSMUST00000076265 NacadQ5SWP3 1504 aa14.28□□□□□ -0.12
Upf3b-201ENSMUST00000076265 CenpbP27790 599 aa14.25□□□□□ -0.13
Upf3b-201ENSMUST00000076265 Kdm5dQ62240 1548 aa14.24□□□□□ -0.13
Upf3b-201ENSMUST00000076265 Cnksr2Q80YA9 1032 aa14.23□□□□□ -0.13
Upf3b-201ENSMUST00000076265 Stag3O70576 1240 aa14.2□□□□□ -0.14
Upf3b-201ENSMUST00000076265 Esf1Q3V1V3 845 aaKnown RBP14.2□□□□□ -0.14
Upf3b-201ENSMUST00000076265 Cdk11bP24788 784 aaKnown RBP14.19□□□□□ -0.14
Upf3b-201ENSMUST00000076265 Znf316Q6PGE4 1016 aa14.16□□□□□ -0.14
Upf3b-201ENSMUST00000076265 Pknox2Q8BG99 474 aa14.15□□□□□ -0.14
Upf3b-201ENSMUST00000076265 Cers3Q1A3B0 383 aa14.15□□□□□ -0.14
Upf3b-201ENSMUST00000076265 Gtf3c3Q3TMP1 882 aa14.12□□□□□ -0.15
Upf3b-201ENSMUST00000076265 Nlrp6Q91WS2 869 aa14.12□□□□□ -0.15
Upf3b-201ENSMUST00000076265 Irx6Q9ER75 438 aa14.11□□□□□ -0.15
Upf3b-201ENSMUST00000076265 Samd1D3YXK1 519 aa14.07□□□□□ -0.16
Upf3b-201ENSMUST00000076265 Senp3Q9EP97 568 aaKnown RBP14.07□□□□□ -0.16
Upf3b-201ENSMUST00000076265 4933416C03RikQ3V063 378 aa14.04□□□□□ -0.16
Upf3b-201ENSMUST00000076265 Sycp2Q9CUU3 1500 aa14.01□□□□□ -0.17
Upf3b-201ENSMUST00000076265 MyclP10166 368 aa14.01□□□□□ -0.17
Upf3b-201ENSMUST00000076265 Dcaf1Q80TR8 1506 aa14□□□□□ -0.17
Upf3b-201ENSMUST00000076265 Gm38655A0A286YDK6 273 aa14□□□□□ -0.17
Upf3b-201ENSMUST00000076265 Pcgf6Q99NA9 353 aa13.99□□□□□ -0.17
Upf3b-201ENSMUST00000076265 Gm13697A2AK42 830 aa13.96□□□□□ -0.17
Upf3b-201ENSMUST00000076265 NefmP08553 848 aa13.96□□□□□ -0.18
Upf3b-201ENSMUST00000076265 Skap1Q3UUV5 355 aa13.96□□□□□ -0.18
Upf3b-201ENSMUST00000076265 Ciz1Q8VEH2 845 aa13.92□□□□□ -0.18
Upf3b-201ENSMUST00000076265 Rad21Q61550 635 aaKnown RBP13.91□□□□□ -0.18
Upf3b-201ENSMUST00000076265 NclP09405 707 aaKnown RBP13.89□□□□□ -0.19
Upf3b-201ENSMUST00000076265 Arid4bA2CG63 1314 aaKnown RBP13.85□□□□□ -0.19
Upf3b-201ENSMUST00000076265 BicraF8VPZ9 1578 aa13.84□□□□□ -0.19
Upf3b-201ENSMUST00000076265 Kiaa1211Q5PR69 1207 aa13.81□□□□□ -0.2
Upf3b-201ENSMUST00000076265 Zbtb38Q3LR78 1197 aa13.81□□□□□ -0.2
Upf3b-201ENSMUST00000076265 Fgd1P52734 960 aa13.75□□□□□ -0.21
Upf3b-201ENSMUST00000076265 NrdcQ8BHG1 1161 aa13.75□□□□□ -0.21
Upf3b-201ENSMUST00000076265 Fam163aQ8CAA5 168 aa13.7□□□□□ -0.22
Upf3b-201ENSMUST00000076265 Rb1cc1Q9ESK9 1588 aa13.7□□□□□ -0.22
Upf3b-201ENSMUST00000076265 HomezQ80W88 542 aa13.69□□□□□ -0.22
Upf3b-201ENSMUST00000076265 Cdca7Q9D0M2 382 aa13.69□□□□□ -0.22
Upf3b-201ENSMUST00000076265 Hs6st3Q9QYK4 470 aa13.68□□□□□ -0.22
Upf3b-201ENSMUST00000076265 Tmem132aQ922P8 1018 aa13.67□□□□□ -0.22
Upf3b-201ENSMUST00000076265 Rangap1P46061 589 aaKnown RBP13.66□□□□□ -0.22
Upf3b-201ENSMUST00000076265 Dnajc5bQ9CQ94 199 aa13.66□□□□□ -0.22
Upf3b-201ENSMUST00000076265 Prm3Q62100 101 aa13.65□□□□□ -0.22
Retrieved 100 of 22,080 RNA–protein pairs in 65.4 ms