RNA–Protein interactions for RNA: YLL011W

SOF1, Transcript of Protein required for biogenesis of 40S (small) ribosomal subunit, yeastyeast

Gene SOF1, Length 1,470 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SOF1YLL011W PRE1P22141 198 aaKnown RBP2.55□□□□□ -2
SOF1YLL011W PAU2P32612 120 aa2.55□□□□□ -2
SOF1YLL011W SED1Q01589 338 aa2.55□□□□□ -2
SOF1YLL011W YIL014C-AQ02598 104 aa2.55□□□□□ -2
SOF1YLL011W NCE101Q02820 53 aa2.55□□□□□ -2
SOF1YLL011W YLR194CQ05777 254 aa2.55□□□□□ -2
SOF1YLL011W COA3Q3E7B2 85 aa2.55□□□□□ -2
SOF1YLL011W YCR075W-AQ3E830 75 aa2.55□□□□□ -2
SOF1YLL011W CCW14O13547 238 aa2.54□□□□□ -2
SOF1YLL011W YBR027CP38220 110 aa2.54□□□□□ -2
SOF1YLL011W SLH1P53327 1967 aaKnown RBP2.53□□□□□ -2
SOF1YLL011W RPL13BP40212 199 aaKnown RBP2.53□□□□□ -2
SOF1YLL011W YIR020CP40575 100 aa2.53□□□□□ -2
SOF1YLL011W VAM10Q08474 114 aa2.53□□□□□ -2
SOF1YLL011W CDC39P25655 2108 aaKnown RBP2.53□□□□□ -2
SOF1YLL011W PAU24P38155 120 aa2.52□□□□□ -2.01
SOF1YLL011W LST8P41318 303 aa2.52□□□□□ -2.01
SOF1YLL011W VMA21P41806 77 aa2.52□□□□□ -2.01
SOF1YLL011W PCC1Q3E833 88 aa2.52□□□□□ -2.01
SOF1YLL011W BLM10P43583 2143 aa2.52□□□□□ -2.01
SOF1YLL011W RPL33AP05744 107 aaKnown RBP2.52□□□□□ -2.01
SOF1YLL011W YGL010WP25338 174 aa2.52□□□□□ -2.01
SOF1YLL011W SMX2P40204 77 aaKnown RBP2.52□□□□□ -2.01
SOF1YLL011W COA6Q3E846 104 aa2.52□□□□□ -2.01
SOF1YLL011W ATG8P38182 117 aaRIP-Chip data2.51□□□□□ -2.01not detected
SOF1YLL011W SNN1P48232 102 aa2.51□□□□□ -2.01
SOF1YLL011W YBR242WP38331 238 aa2.5□□□□□ -2.01
SOF1YLL011W COX23P38824 151 aa2.5□□□□□ -2.01
SOF1YLL011W HPA2Q06592 156 aa2.5□□□□□ -2.01
SOF1YLL011W PFY1P07274 126 aa2.49□□□□□ -2.01
SOF1YLL011W PAU19P0CE85 124 aa2.49□□□□□ -2.01
SOF1YLL011W PAU3P25610 124 aa2.49□□□□□ -2.01
SOF1YLL011W YMR122CQ03879 124 aa2.49□□□□□ -2.01
SOF1YLL011W YGL194C-AQ2V2P6 80 aa2.49□□□□□ -2.01
SOF1YLL011W URA2P07259 2214 aaKnown RBP2.48□□□□□ -2.01
SOF1YLL011W AIM4P38305 123 aaPredicted RBP2.48□□□□□ -2.01
SOF1YLL011W SEN15Q04675 128 aa2.48□□□□□ -2.01
SOF1YLL011W SCP1Q08873 200 aa2.48□□□□□ -2.01
SOF1YLL011W PRM3Q08931 133 aa2.48□□□□□ -2.01
SOF1YLL011W YFL065CP43539 102 aa2.47□□□□□ -2.01
SOF1YLL011W SIP18P50263 79 aa2.47□□□□□ -2.01
SOF1YLL011W FIT3Q08907 204 aa2.47□□□□□ -2.01
SOF1YLL011W BPH1P25356 2167 aa2.47□□□□□ -2.01
SOF1YLL011W POR2P40478 281 aa2.46□□□□□ -2.02
SOF1YLL011W YOL131WQ08270 108 aa2.46□□□□□ -2.02
SOF1YLL011W YKL018C-AQ3E7A7 99 aa2.46□□□□□ -2.02
SOF1YLL011W SNU13P39990 126 aaKnown RBP2.45□□□□□ -2.02
SOF1YLL011W PAU16P35994 123 aa2.45□□□□□ -2.02
SOF1YLL011W PAU15P40585 124 aa2.45□□□□□ -2.02
SOF1YLL011W RSM19P53733 91 aaPredicted RBP2.45□□□□□ -2.02
SOF1YLL011W COA4Q05809 96 aa2.45□□□□□ -2.02
SOF1YLL011W YDR029WQ12111 104 aa2.45□□□□□ -2.02
SOF1YLL011W YOR343CQ12484 108 aa2.45□□□□□ -2.02
SOF1YLL011W YBR032WP38223 100 aa2.44□□□□□ -2.02
SOF1YLL011W EMC5P40540 141 aa2.44□□□□□ -2.02
SOF1YLL011W MSL1P40567 111 aaPredicted RBP2.44□□□□□ -2.02
SOF1YLL011W RRT15Q3E811 62 aa2.43□□□□□ -2.02
SOF1YLL011W TIM12P32830 109 aa2.42□□□□□ -2.02
SOF1YLL011W YMR082CQ04276 118 aa2.42□□□□□ -2.02
SOF1YLL011W YCL048W-AQ2V2Q2 79 aa2.42□□□□□ -2.02
SOF1YLL011W YKL068W-AQ3E826 78 aa2.42□□□□□ -2.02
SOF1YLL011W YIL163CP40448 117 aa2.41□□□□□ -2.02
SOF1YLL011W YPR203WQ08994 102 aa2.41□□□□□ -2.02
SOF1YLL011W YGR035W-AQ45U48 73 aa2.41□□□□□ -2.02
SOF1YLL011W YHR212W-AP0CX91 67 aa2.4□□□□□ -2.02
SOF1YLL011W HMRA2P0CY13 119 aa2.4□□□□□ -2.02
SOF1YLL011W YLR363W-AQ3E747 85 aa2.4□□□□□ -2.02
SOF1YLL011W YLR285C-AQ3E771 56 aa2.4□□□□□ -2.02
SOF1YLL011W CYB5P40312 120 aa2.39□□□□□ -2.03
SOF1YLL011W HMRA1P0CY11 126 aa2.39□□□□□ -2.03
SOF1YLL011W YHR138CP38841 114 aaPredicted RBP2.39□□□□□ -2.03
SOF1YLL011W RPL39P04650 51 aa2.38□□□□□ -2.03
SOF1YLL011W AQY2P0CD90 149 aa2.37□□□□□ -2.03
SOF1YLL011W YHL005CP38752 130 aa2.37□□□□□ -2.03
SOF1YLL011W IRC21Q04772 201 aa2.37□□□□□ -2.03
SOF1YLL011W ECM12O13529 151 aa2.36□□□□□ -2.03
SOF1YLL011W PAU5P43575 122 aa2.35□□□□□ -2.03
SOF1YLL011W YDR042CQ03205 200 aa2.35□□□□□ -2.03
SOF1YLL011W CCW12Q12127 133 aa2.35□□□□□ -2.03
SOF1YLL011W YNL122CP53921 115 aaPredicted RBP2.34□□□□□ -2.03
SOF1YLL011W MHF2Q3E829 80 aa2.34□□□□□ -2.03
SOF1YLL011W SRB6P32570 121 aa2.33□□□□□ -2.04
SOF1YLL011W LSM6Q06406 86 aaKnown RBP2.33□□□□□ -2.04
SOF1YLL011W ROX3P25046 220 aa2.33□□□□□ -2.04
SOF1YLL011W VPS55P47111 140 aa2.33□□□□□ -2.04
SOF1YLL011W SUS1Q6WNK7 96 aa2.33□□□□□ -2.04
SOF1YLL011W YMR105W-AQ8TGS8 64 aa2.33□□□□□ -2.04
SOF1YLL011W RPS22AP0C0W1 130 aaKnown RBP2.32□□□□□ -2.04
SOF1YLL011W GCV3P39726 170 aaPredicted RBP2.32□□□□□ -2.04
SOF1YLL011W ICS3P47034 131 aa2.32□□□□□ -2.04
SOF1YLL011W YJL009WP47078 108 aa2.32□□□□□ -2.04
SOF1YLL011W ENV10Q99382 181 aa2.32□□□□□ -2.04
SOF1YLL011W YBR013CP38215 129 aa2.31□□□□□ -2.04
SOF1YLL011W RSM18P40033 138 aa2.3□□□□□ -2.04
SOF1YLL011W MIC27P50945 234 aa2.3□□□□□ -2.04
SOF1YLL011W MRPS12P53732 153 aa2.3□□□□□ -2.04
SOF1YLL011W YGL041C-BQ3E750 60 aa2.3□□□□□ -2.04
SOF1YLL011W IMP2P46972 177 aa2.29□□□□□ -2.04
SOF1YLL011W YAR064WP39563 99 aa2.28□□□□□ -2.04
SOF1YLL011W YOL118CQ08259 102 aa2.28□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 27 ms