RNA–Protein interactions for RNA: YLR397C

AFG2, Transcript of ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex, yeast

Gene AFG2, Length 2,343 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
AFG2	YLR397C	PEX22	P39718	180 aa		5.96	□□□□□ -1.46
AFG2	YLR397C	ROT1	Q03691	256 aa		5.96	□□□□□ -1.46
AFG2	YLR397C	LSM6	Q06406	86 aa	Known RBP	5.96	□□□□□ -1.46
AFG2	YLR397C	YMR175W-A	Q3E766	64 aa		5.96	□□□□□ -1.46
AFG2	YLR397C	YBR209W	P38311	105 aa		5.96	□□□□□ -1.46
AFG2	YLR397C	RPL34B	P40525	121 aa	Known RBP	5.96	□□□□□ -1.46
AFG2	YLR397C	MMS2	P53152	137 aa		5.96	□□□□□ -1.46
AFG2	YLR397C	SUT2	Q12286	268 aa		5.96	□□□□□ -1.46
AFG2	YLR397C	Q0255	P03881	472 aa		5.95	□□□□□ -1.46
AFG2	YLR397C	YHR180W	P38868	163 aa		5.95	□□□□□ -1.46
AFG2	YLR397C	SVP26	P38869	228 aa		5.95	□□□□□ -1.46
AFG2	YLR397C	RRS1	Q08746	203 aa	Known RBP	5.95	□□□□□ -1.46
AFG2	YLR397C	RPL42A	P0CX27	106 aa	Known RBP	5.94	□□□□□ -1.46
AFG2	YLR397C	RPL42B	P0CX28	106 aa	Known RBP	5.94	□□□□□ -1.46
AFG2	YLR397C	MRS3	P10566	314 aa		5.94	□□□□□ -1.46
AFG2	YLR397C	YFL019C	P43576	117 aa		5.94	□□□□□ -1.46
AFG2	YLR397C	YGR050C	P53231	118 aa		5.94	□□□□□ -1.46
AFG2	YLR397C	NRM1	P53718	249 aa		5.94	□□□□□ -1.46
AFG2	YLR397C	YOR268C	Q08734	132 aa		5.94	□□□□□ -1.46
AFG2	YLR397C	YOR387C	Q08910	206 aa		5.94	□□□□□ -1.46
AFG2	YLR397C	YNL277W-A	Q3E7Z0	62 aa		5.94	□□□□□ -1.46
AFG2	YLR397C	YPR053C	Q6Q5F3	151 aa		5.94	□□□□□ -1.46
AFG2	YLR397C	BET1	P22804	142 aa		5.94	□□□□□ -1.46
AFG2	YLR397C	YFH1	Q07540	174 aa		5.94	□□□□□ -1.46
AFG2	YLR397C	BOL1	Q3E793	110 aa		5.94	□□□□□ -1.46
AFG2	YLR397C	YIA6	P40556	373 aa		5.93	□□□□□ -1.46
AFG2	YLR397C	COX12	Q01519	83 aa		5.93	□□□□□ -1.46
AFG2	YLR397C	YHP1	Q04116	353 aa		5.93	□□□□□ -1.46
AFG2	YLR397C	RPL20A	P0CX23	172 aa	Known RBP	5.93	□□□□□ -1.46
AFG2	YLR397C	RPL20B	P0CX24	172 aa	Predicted RBP	5.93	□□□□□ -1.46
AFG2	YLR397C	YFL051C	P43552	160 aa		5.93	□□□□□ -1.46
AFG2	YLR397C	CUZ1	P53899	274 aa		5.93	□□□□□ -1.46
AFG2	YLR397C	YLR412C-A	Q3E742	68 aa		5.93	□□□□□ -1.46
AFG2	YLR397C	YKR032W	P36127	104 aa		5.92	□□□□□ -1.46
AFG2	YLR397C	YGL034C	P53186	121 aa		5.92	□□□□□ -1.46
AFG2	YLR397C	RLM1	Q12224	676 aa		5.92	□□□□□ -1.46
AFG2	YLR397C	YPR108W-A	Q3E7B3	70 aa		5.92	□□□□□ -1.46
AFG2	YLR397C	YLR365W	Q7LIF2	110 aa		5.92	□□□□□ -1.46
AFG2	YLR397C	SWD3	P38123	315 aa		5.92	□□□□□ -1.46
AFG2	YLR397C	YOR376W-A	Q3E805	51 aa		5.92	□□□□□ -1.46
AFG2	YLR397C	PBI2	P0CT04	75 aa	Known RBP	5.91	□□□□□ -1.46
AFG2	YLR397C	GGC1	P38988	300 aa		5.91	□□□□□ -1.46
AFG2	YLR397C	NIP7	Q08962	181 aa	Known RBP	5.91	□□□□□ -1.46
AFG2	YLR397C	RPL18A	P0CX49	186 aa	Known RBP	5.91	□□□□□ -1.46
AFG2	YLR397C	RPL18B	P0CX50	186 aa	Known RBP	5.91	□□□□□ -1.46
AFG2	YLR397C	RPL11B	Q3E757	174 aa	Predicted RBP	5.91	□□□□□ -1.46
AFG2	YLR397C	HTL1	Q9URQ5	78 aa		5.91	□□□□□ -1.46
AFG2	YLR397C	PIR1	Q03178	341 aa		5.9	□□□□□ -1.46
AFG2	YLR397C	MIX14	Q04341	121 aa		5.9	□□□□□ -1.46
AFG2	YLR397C	BEM2	P39960	2167 aa	Known RBP	5.9	□□□□□ -1.47
AFG2	YLR397C	AQY1	P0CD91	305 aa		5.89	□□□□□ -1.47
AFG2	YLR397C	YER187W	P40102	141 aa		5.89	□□□□□ -1.47
AFG2	YLR397C	YFR054C	P43622	192 aa		5.89	□□□□□ -1.47
AFG2	YLR397C	IRC23	Q08416	157 aa		5.89	□□□□□ -1.47
AFG2	YLR397C	YDR381C-A	Q3E6R5	114 aa		5.89	□□□□□ -1.47
AFG2	YLR397C	ARF2	P19146	181 aa	Known RBP	5.88	□□□□□ -1.47
AFG2	YLR397C	MIC10	Q96VH5	97 aa		5.88	□□□□□ -1.47
AFG2	YLR397C	MXR2	P25566	168 aa		5.87	□□□□□ -1.47
AFG2	YLR397C	DSS4	P32601	143 aa		5.87	□□□□□ -1.47
AFG2	YLR397C	RPL15B	P54780	204 aa	Predicted RBP	5.87	□□□□□ -1.47
AFG2	YLR397C	FLO9	P39712	1322 aa		5.87	□□□□□ -1.47
AFG2	YLR397C	DIF1	O13577	133 aa		5.86	□□□□□ -1.47
AFG2	YLR397C	SGN1	P40561	250 aa	Known RBP RIP-Chip data	5.86	□□□□□ -1.47	not detected
AFG2	YLR397C	SUT1	P53032	299 aa	Known RBP	5.86	□□□□□ -1.47
AFG2	YLR397C	ATP19	P81451	68 aa		5.86	□□□□□ -1.47
AFG2	YLR397C	TOM1	Q03280	3268 aa		5.86	□□□□□ -1.47
AFG2	YLR397C	UBC4	P15731	148 aa		5.86	□□□□□ -1.47
AFG2	YLR397C	PBA1	Q05778	276 aa		5.86	□□□□□ -1.47
AFG2	YLR397C	TIM22	Q12328	207 aa		5.86	□□□□□ -1.47
AFG2	YLR397C	RPL11A	P0C0W9	174 aa	Known RBP	5.85	□□□□□ -1.47
AFG2	YLR397C	YMR141C	P40211	102 aa		5.85	□□□□□ -1.47
AFG2	YLR397C	HNT2	P49775	206 aa		5.85	□□□□□ -1.47
AFG2	YLR397C	YLR012C	Q07927	99 aa		5.85	□□□□□ -1.47
AFG2	YLR397C	EMC6	Q12431	108 aa		5.85	□□□□□ -1.47
AFG2	YLR397C	TDA8	Q6B2U8	126 aa		5.85	□□□□□ -1.47
AFG2	YLR397C	RPL32	P38061	130 aa	Known RBP	5.85	□□□□□ -1.47
AFG2	YLR397C	YLR112W	Q12130	139 aa		5.85	□□□□□ -1.47
AFG2	YLR397C	PRM7	Q12459	698 aa		5.85	□□□□□ -1.47
AFG2	YLR397C	NAG1	Q8TGN9	163 aa		5.85	□□□□□ -1.47
AFG2	YLR397C	RPS8A	P0CX39	200 aa	Known RBP	5.84	□□□□□ -1.47
AFG2	YLR397C	RPS8B	P0CX40	200 aa	Known RBP	5.84	□□□□□ -1.47
AFG2	YLR397C	RPL16B	P26785	198 aa	Known RBP	5.84	□□□□□ -1.47
AFG2	YLR397C	MED6	P38782	295 aa		5.84	□□□□□ -1.47
AFG2	YLR397C	YHR173C	P38864	112 aa		5.84	□□□□□ -1.47
AFG2	YLR397C	SIM1	P40472	476 aa		5.84	□□□□□ -1.47
AFG2	YLR397C	ECO1	P43605	281 aa		5.84	□□□□□ -1.47
AFG2	YLR397C	YNL190W	P53872	204 aa		5.84	□□□□□ -1.47
AFG2	YLR397C	HAL1	Q01766	294 aa		5.84	□□□□□ -1.47
AFG2	YLR397C	PCL2	P25693	308 aa		5.83	□□□□□ -1.48
AFG2	YLR397C	YGR164W	P53291	111 aa		5.83	□□□□□ -1.48
AFG2	YLR397C	HMRA2	P0CY13	119 aa		5.83	□□□□□ -1.48
AFG2	YLR397C	PAU7	P39545	55 aa		5.83	□□□□□ -1.48
AFG2	YLR397C	YDR102C	Q03864	110 aa		5.83	□□□□□ -1.48
AFG2	YLR397C	YNL217W	P40152	326 aa		5.82	□□□□□ -1.48
AFG2	YLR397C	GAT4	P40569	121 aa		5.82	□□□□□ -1.48
AFG2	YLR397C	KEG1	P43614	200 aa		5.82	□□□□□ -1.48
AFG2	YLR397C	RSM19	P53733	91 aa	Predicted RBP	5.82	□□□□□ -1.48
AFG2	YLR397C	YNL046W	P53956	172 aa		5.82	□□□□□ -1.48
AFG2	YLR397C	FIT2	Q08906	153 aa		5.82	□□□□□ -1.48
AFG2	YLR397C	AIM19	P40502	157 aa		5.82	□□□□□ -1.48

Retrieved 100 of 5,963 RNA–protein pairs in 28.4 ms