RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP9	YER098W	SPT4	P32914	102 aa	Predicted RBP	4.13	□□□□□ -1.75
UBP9	YER098W	YER181C	P40097	107 aa		4.13	□□□□□ -1.75
UBP9	YER098W	YPL073C	P40323	161 aa		4.13	□□□□□ -1.75
UBP9	YER098W	YIL059C	P40520	121 aa		4.13	□□□□□ -1.75
UBP9	YER098W	YJR085C	P47131	105 aa	Known RBP	4.13	□□□□□ -1.75
UBP9	YER098W	YIP3	P53633	176 aa		4.13	□□□□□ -1.75
UBP9	YER098W	YDR209C	Q03480	137 aa		4.13	□□□□□ -1.75
UBP9	YER098W	VPS68	Q12016	184 aa		4.13	□□□□□ -1.75
UBP9	YER098W	INO2	P26798	304 aa		4.12	□□□□□ -1.75
UBP9	YER098W	KTI12	P34253	313 aa	Known RBP	4.12	□□□□□ -1.75
UBP9	YER098W	YFR057W	P43625	151 aa		4.12	□□□□□ -1.75
UBP9	YER098W	KNH1	P50112	268 aa		4.12	□□□□□ -1.75
UBP9	YER098W	USB1	Q12208	290 aa	Known RBP	4.12	□□□□□ -1.75
UBP9	YER098W	YAL063C-A	Q3E791	96 aa		4.12	□□□□□ -1.75
UBP9	YER098W	YER039C-A	P0CD97	72 aa		4.12	□□□□□ -1.75
UBP9	YER098W	YKL044W	P36092	106 aa		4.12	□□□□□ -1.75
UBP9	YER098W	YKR041W	P36134	250 aa		4.12	□□□□□ -1.75
UBP9	YER098W	PEX22	P39718	180 aa		4.12	□□□□□ -1.75
UBP9	YER098W	MRX11	Q03079	207 aa		4.12	□□□□□ -1.75
UBP9	YER098W	IRC19	Q07843	230 aa		4.12	□□□□□ -1.75
UBP9	YER098W	YOR376W	Q08900	122 aa		4.12	□□□□□ -1.75
UBP9	YER098W	POL2	P21951	2222 aa	Known RBP	4.12	□□□□□ -1.75
UBP9	YER098W	MRPL31	P14063	131 aa	Predicted RBP	4.11	□□□□□ -1.75
UBP9	YER098W	PET8	P38921	284 aa		4.11	□□□□□ -1.75
UBP9	YER098W	ATP19	P81451	68 aa		4.11	□□□□□ -1.75
UBP9	YER098W	UBC7	Q02159	165 aa		4.11	□□□□□ -1.75
UBP9	YER098W	YDR042C	Q03205	200 aa		4.11	□□□□□ -1.75
UBP9	YER098W	MPD1	Q12404	318 aa	Known RBP	4.11	□□□□□ -1.75
UBP9	YER098W	HTL1	Q9URQ5	78 aa		4.11	□□□□□ -1.75
UBP9	YER098W	YHR173C	P38864	112 aa		4.11	□□□□□ -1.75
UBP9	YER098W	TIF34	P40217	347 aa	Known RBP	4.11	□□□□□ -1.75
UBP9	YER098W	SBH2	P52871	88 aa		4.11	□□□□□ -1.75
UBP9	YER098W	YMR103C	Q04436	120 aa		4.11	□□□□□ -1.75
UBP9	YER098W	YPS3	Q12303	508 aa		4.11	□□□□□ -1.75
UBP9	YER098W	VMA11	P32842	164 aa		4.1	□□□□□ -1.75
UBP9	YER098W	NRG2	P38082	220 aa		4.1	□□□□□ -1.75
UBP9	YER098W	RAF1	Q06891	181 aa		4.1	□□□□□ -1.75
UBP9	YER098W	RPL27B	P0C2H7	136 aa	Known RBP	4.1	□□□□□ -1.75
UBP9	YER098W	KRE1	P17260	313 aa		4.1	□□□□□ -1.75
UBP9	YER098W	HSP150	P32478	413 aa		4.1	□□□□□ -1.75
UBP9	YER098W	FMP46	P36141	133 aa	Known RBP	4.1	□□□□□ -1.75
UBP9	YER098W	YEL067C	P39978	195 aa		4.1	□□□□□ -1.75
UBP9	YER098W	FCF1	Q05498	189 aa	Predicted RBP	4.1	□□□□□ -1.75
UBP9	YER098W	SRL1	Q08673	210 aa		4.1	□□□□□ -1.75
UBP9	YER098W	HNT3	Q08702	217 aa		4.1	□□□□□ -1.75
UBP9	YER098W	YRA1	Q12159	226 aa	Known RBP	4.1	□□□□□ -1.75
UBP9	YER098W	HSP12	P22943	109 aa	Known RBP	4.09	□□□□□ -1.75
UBP9	YER098W	CSH1	P38287	376 aa		4.09	□□□□□ -1.75
UBP9	YER098W	PAU7	P39545	55 aa		4.09	□□□□□ -1.75
UBP9	YER098W	ERG28	P40030	148 aa		4.09	□□□□□ -1.75
UBP9	YER098W	YDR119W-A	Q2V2P9	66 aa		4.09	□□□□□ -1.75
UBP9	YER098W	YHR214C-E	Q8TGK0	99 aa		4.09	□□□□□ -1.75
UBP9	YER098W	ENV10	Q99382	181 aa		4.09	□□□□□ -1.75
UBP9	YER098W	YAL064W-B	O13512	126 aa		4.09	□□□□□ -1.76
UBP9	YER098W	RPS8A	P0CX39	200 aa	Known RBP	4.09	□□□□□ -1.76
UBP9	YER098W	RPS8B	P0CX40	200 aa	Known RBP	4.09	□□□□□ -1.76
UBP9	YER098W	DSE2	P38844	325 aa		4.09	□□□□□ -1.76
UBP9	YER098W	YTH1	Q06102	208 aa	Predicted RBP	4.09	□□□□□ -1.76
UBP9	YER098W	YKR032W	P36127	104 aa		4.08	□□□□□ -1.76
UBP9	YER098W	FIT2	Q08906	153 aa		4.08	□□□□□ -1.76
UBP9	YER098W	YDR029W	Q12111	104 aa		4.08	□□□□□ -1.76
UBP9	YER098W	YCL021W-A	Q96VH3	125 aa		4.08	□□□□□ -1.76
UBP9	YER098W	YSF3	P0C074	85 aa	Predicted RBP	4.07	□□□□□ -1.76
UBP9	YER098W	YMR31	P19955	123 aa		4.07	□□□□□ -1.76
UBP9	YER098W	YCR085W	P25650	117 aa		4.07	□□□□□ -1.76
UBP9	YER098W	VPS55	P47111	140 aa		4.07	□□□□□ -1.76
UBP9	YER098W	YMR317W	Q04893	1140 aa		4.07	□□□□□ -1.76
UBP9	YER098W	RFM1	Q12192	310 aa		4.07	□□□□□ -1.76
UBP9	YER098W	YFL041W-A	Q3E817	63 aa		4.07	□□□□□ -1.76
UBP9	YER098W	YDL022C-A	P0C5L6	82 aa		4.07	□□□□□ -1.76
UBP9	YER098W	IMP1	P28627	190 aa		4.07	□□□□□ -1.76
UBP9	YER098W	YNL194C	P40169	301 aa		4.07	□□□□□ -1.76
UBP9	YER098W	FIP1	P45976	327 aa		4.07	□□□□□ -1.76
UBP9	YER098W	YNR077C	P53758	84 aa		4.07	□□□□□ -1.76
UBP9	YER098W	YOR097C	Q12274	175 aa	Predicted RBP	4.07	□□□□□ -1.76
UBP9	YER098W	YKL183C-A	Q3E765	70 aa		4.07	□□□□□ -1.76
UBP9	YER098W	RAD6	P06104	172 aa		4.06	□□□□□ -1.76
UBP9	YER098W	YPS5	P53057	165 aa		4.06	□□□□□ -1.76
UBP9	YER098W	ABF2	Q02486	183 aa		4.06	□□□□□ -1.76
UBP9	YER098W	COF1	Q03048	143 aa	Known RBP	4.06	□□□□□ -1.76
UBP9	YER098W	LSM6	Q06406	86 aa	Known RBP	4.06	□□□□□ -1.76
UBP9	YER098W	YPL261C	Q08976	102 aa		4.06	□□□□□ -1.76
UBP9	YER098W	ECM12	O13529	151 aa		4.06	□□□□□ -1.76
UBP9	YER098W	UBC5	P15732	148 aa		4.06	□□□□□ -1.76
UBP9	YER098W	TOM40	P23644	387 aa	Known RBP	4.06	□□□□□ -1.76
UBP9	YER098W	ROX3	P25046	220 aa		4.06	□□□□□ -1.76
UBP9	YER098W	MID2	P36027	376 aa		4.06	□□□□□ -1.76
UBP9	YER098W	YMR141C	P40211	102 aa		4.06	□□□□□ -1.76
UBP9	YER098W	DAD1	Q12248	94 aa		4.06	□□□□□ -1.76
UBP9	YER098W	BOL1	Q3E793	110 aa		4.06	□□□□□ -1.76
UBP9	YER098W	YER078W-A	Q3E7A2	54 aa		4.06	□□□□□ -1.76
UBP9	YER098W	YBR121C-A	P0C5L4	52 aa		4.05	□□□□□ -1.76
UBP9	YER098W	YHR140W	P38842	239 aa		4.05	□□□□□ -1.76
UBP9	YER098W	CIS3	P47001	227 aa		4.05	□□□□□ -1.76
UBP9	YER098W	CAX4	P53223	239 aa		4.05	□□□□□ -1.76
UBP9	YER098W	HST4	P53688	370 aa		4.05	□□□□□ -1.76
UBP9	YER098W	DAD4	P69851	72 aa		4.05	□□□□□ -1.76
UBP9	YER098W	YDR524C-B	Q3E6R4	66 aa		4.05	□□□□□ -1.76
UBP9	YER098W	RPS27A	P35997	82 aa	Known RBP	4.05	□□□□□ -1.76
UBP9	YER098W	GPI18	P38211	433 aa		4.05	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 35.6 ms