RNA–Protein interactions for RNA: YDL225W

SHS1, Transcript of Component of the septin ring that is required for cytokinesis, yeast

Gene SHS1, Length 1,656 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHS1	YDL225W	IML1	P47170	1584 aa		0.75	□□□□□ -2.29
SHS1	YDL225W	NUP192	P47054	1683 aa		0.74	□□□□□ -2.29
SHS1	YDL225W	KRE5	P22023	1365 aa		0.74	□□□□□ -2.29
SHS1	YDL225W	VMR1	P38735	1592 aa		0.74	□□□□□ -2.29
SHS1	YDL225W	YMR122C	Q03879	124 aa		0.74	□□□□□ -2.29
SHS1	YDL225W	IRC21	Q04772	201 aa		0.74	□□□□□ -2.29
SHS1	YDL225W	YDR278C	Q05612	105 aa		0.74	□□□□□ -2.29
SHS1	YDL225W	SOM1	Q05676	74 aa		0.74	□□□□□ -2.29
SHS1	YDL225W	SLO1	Q3E784	85 aa		0.74	□□□□□ -2.29
SHS1	YDL225W	LAA1	P39526	2014 aa		0.74	□□□□□ -2.29
SHS1	YDL225W	RPA190	P10964	1664 aa	Known RBP	0.74	□□□□□ -2.29
SHS1	YDL225W	SPO14	P36126	1683 aa		0.74	□□□□□ -2.29
SHS1	YDL225W	YOR093C	Q12275	1648 aa		0.73	□□□□□ -2.29
SHS1	YDL225W	RPO41	P13433	1351 aa	Known RBP	0.73	□□□□□ -2.29
SHS1	YDL225W	RAD50	P12753	1312 aa		0.73	□□□□□ -2.29
SHS1	YDL225W	HAP1	P0CE41	1502 aa		0.73	□□□□□ -2.29
SHS1	YDL225W	RPO21	P04050	1733 aa	Known RBP	0.73	□□□□□ -2.29
SHS1	YDL225W	RPS1A	P33442	255 aa	Known RBP	0.73	□□□□□ -2.29
SHS1	YDL225W	UTP11	P34247	250 aa	Predicted RBP	0.73	□□□□□ -2.29
SHS1	YDL225W	YJL009W	P47078	108 aa		0.73	□□□□□ -2.29
SHS1	YDL225W	YDR366C	P87287	132 aa		0.73	□□□□□ -2.29
SHS1	YDL225W	DDP1	Q99321	188 aa	Known RBP	0.73	□□□□□ -2.29
SHS1	YDL225W	BCK1	Q01389	1478 aa		0.73	□□□□□ -2.29
SHS1	YDL225W	BUD3	P25558	1636 aa		0.73	□□□□□ -2.29
SHS1	YDL225W	URA2	P07259	2214 aa	Known RBP	0.73	□□□□□ -2.29
SHS1	YDL225W	BNI1	P41832	1953 aa		0.73	□□□□□ -2.29
SHS1	YDL225W	YRF1-1	P0CX20	1796 aa		0.73	□□□□□ -2.29
SHS1	YDL225W	YRF1-5	P0CX21	1796 aa		0.73	□□□□□ -2.29
SHS1	YDL225W	YRF1-8	P0CX22	1796 aa		0.73	□□□□□ -2.29
SHS1	YDL225W	CHC1	P22137	1653 aa	Known RBP	0.72	□□□□□ -2.29
SHS1	YDL225W	NTE1	Q04958	1679 aa		0.72	□□□□□ -2.29
SHS1	YDL225W	SUA7	P29055	345 aa	Predicted RBP	0.72	□□□□□ -2.29
SHS1	YDL225W	GSP1	P32835	219 aa	Known RBP	0.72	□□□□□ -2.29
SHS1	YDL225W	SUI1	P32911	108 aa	Known RBP	0.72	□□□□□ -2.29
SHS1	YDL225W	LST8	P41318	303 aa		0.72	□□□□□ -2.29
SHS1	YDL225W	YNL019C	P53975	284 aa		0.72	□□□□□ -2.29
SHS1	YDL225W	RAF1	Q06891	181 aa		0.72	□□□□□ -2.29
SHS1	YDL225W	YOR385W	Q08909	290 aa		0.72	□□□□□ -2.29
SHS1	YDL225W	YIR021W-A	Q3E739	70 aa		0.72	□□□□□ -2.29
SHS1	YDL225W	YLR361C-A	Q3E795	98 aa		0.72	□□□□□ -2.29
SHS1	YDL225W	Q0144	Q9ZZW2	109 aa		0.72	□□□□□ -2.29
SHS1	YDL225W	SNF2	P22082	1703 aa		0.72	□□□□□ -2.29
SHS1	YDL225W	MLP1	Q02455	1875 aa	Known RBP	0.72	□□□□□ -2.29
SHS1	YDL225W	DOP1	Q03921	1698 aa		0.72	□□□□□ -2.29
SHS1	YDL225W	YMR141C	P40211	102 aa		0.72	□□□□□ -2.29
SHS1	YDL225W	LSM8	P47093	109 aa	Known RBP	0.72	□□□□□ -2.29
SHS1	YDL225W	DYN2	Q02647	92 aa		0.72	□□□□□ -2.29
SHS1	YDL225W	SDH7	Q04401	133 aa		0.72	□□□□□ -2.29
SHS1	YDL225W	NKP2	Q06162	153 aa		0.72	□□□□□ -2.29
SHS1	YDL225W	NAT5	Q08689	176 aa		0.72	□□□□□ -2.29
SHS1	YDL225W	LYS2	P07702	1392 aa		0.71	□□□□□ -2.3
SHS1	YDL225W	NUP188	P52593	1655 aa	Known RBP	0.71	□□□□□ -2.3
SHS1	YDL225W	NMT1	P14743	455 aa		0.71	□□□□□ -2.3
SHS1	YDL225W	PRS3	P38689	320 aa	Known RBP	0.71	□□□□□ -2.3
SHS1	YDL225W	RGI1	P40043	161 aa	Predicted RBP	0.71	□□□□□ -2.3
SHS1	YDL225W	HHO1	P53551	258 aa		0.71	□□□□□ -2.3
SHS1	YDL225W	ARL3	Q02804	198 aa		0.71	□□□□□ -2.3
SHS1	YDL225W	DNF3	Q12674	1656 aa		0.71	□□□□□ -2.3
SHS1	YDL225W	APC1	P53886	1748 aa		0.7	□□□□□ -2.3
SHS1	YDL225W	RPL22A	P05749	121 aa	Known RBP	0.7	□□□□□ -2.3
SHS1	YDL225W	BUD23	P25627	275 aa	Predicted RBP	0.7	□□□□□ -2.3
SHS1	YDL225W	HPM1	P40481	377 aa		0.7	□□□□□ -2.3
SHS1	YDL225W	RBL2	P48606	106 aa	Known RBP	0.7	□□□□□ -2.3
SHS1	YDL225W	CSN9	Q03981	162 aa		0.7	□□□□□ -2.3
SHS1	YDL225W	FRQ1	Q06389	190 aa		0.7	□□□□□ -2.3
SHS1	YDL225W	PRM3	Q08931	133 aa		0.7	□□□□□ -2.3
SHS1	YDL225W	YKL068W-A	Q3E826	78 aa		0.7	□□□□□ -2.3
SHS1	YDL225W	VPS13	Q07878	3144 aa		0.7	□□□□□ -2.3
SHS1	YDL225W	YHR213W	P0CI67	198 aa		0.69	□□□□□ -2.3
SHS1	YDL225W	SFT2	P38166	215 aa		0.69	□□□□□ -2.3
SHS1	YDL225W	RPS20	P38701	121 aa	Known RBP	0.69	□□□□□ -2.3
SHS1	YDL225W	YHR140W	P38842	239 aa		0.69	□□□□□ -2.3
SHS1	YDL225W	VMA7	P39111	118 aa		0.69	□□□□□ -2.3
SHS1	YDL225W	YER137C	P40083	148 aa	Known RBP	0.69	□□□□□ -2.3
SHS1	YDL225W	SPG1	P50088	95 aa		0.69	□□□□□ -2.3
SHS1	YDL225W	APS2	Q00381	147 aa		0.69	□□□□□ -2.3
SHS1	YDL225W	COF1	Q03048	143 aa	Known RBP	0.69	□□□□□ -2.3
SHS1	YDL225W	COA4	Q05809	96 aa		0.69	□□□□□ -2.3
SHS1	YDL225W	ATP14	Q12349	124 aa		0.69	□□□□□ -2.3
SHS1	YDL225W	YNL277W-A	Q3E7Z0	62 aa		0.69	□□□□□ -2.3
SHS1	YDL225W	KTI11	Q3E840	82 aa		0.69	□□□□□ -2.3
SHS1	YDL225W	YGR039W	P53225	103 aa		0.69	□□□□□ -2.3
SHS1	YDL225W	AIM11	P87275	137 aa		0.69	□□□□□ -2.3
SHS1	YDL225W	SAE3	P89114	91 aa		0.69	□□□□□ -2.3
SHS1	YDL225W	YPL067C	Q02754	198 aa		0.69	□□□□□ -2.3
SHS1	YDL225W	LDB18	Q07887	179 aa		0.69	□□□□□ -2.3
SHS1	YDL225W	YPL225W	Q08971	146 aa	Known RBP	0.69	□□□□□ -2.3
SHS1	YDL225W	RTR2	Q12378	196 aa		0.69	□□□□□ -2.3
SHS1	YDL225W	WIP1	Q2V2P8	89 aa		0.69	□□□□□ -2.3
SHS1	YDL225W	RSF2	P46974	1380 aa		0.68	□□□□□ -2.3
SHS1	YDL225W	YRF1-2	P40105	1681 aa		0.68	□□□□□ -2.3
SHS1	YDL225W	YRF1-3	P0CX14	1859 aa		0.68	□□□□□ -2.3
SHS1	YDL225W	YRF1-7	P0CX15	1859 aa		0.68	□□□□□ -2.3
SHS1	YDL225W	YRF1-6	P53819	1859 aa		0.68	□□□□□ -2.3
SHS1	YDL225W	MYO1	P08964	1928 aa		0.68	□□□□□ -2.3
SHS1	YDL225W	YOR304C-A	O14468	76 aa		0.68	□□□□□ -2.3
SHS1	YDL225W	FUN14	P18411	198 aa		0.68	□□□□□ -2.3
SHS1	YDL225W	ANB1	P19211	157 aa		0.68	□□□□□ -2.3
SHS1	YDL225W	YCR101C	P25607	182 aa		0.68	□□□□□ -2.3
SHS1	YDL225W	YGR017W	P53210	297 aa		0.68	□□□□□ -2.3

Retrieved 100 of 5,963 RNA–protein pairs in 92.1 ms