RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	RFC2	P40348	353 aa		3.25	□□□□□ -1.89
CAF16	YFL028C	OST2	P46964	130 aa		3.25	□□□□□ -1.89
CAF16	YFL028C	FCY2	P17064	533 aa		3.24	□□□□□ -1.89
CAF16	YFL028C	KRE1	P17260	313 aa		3.24	□□□□□ -1.89
CAF16	YFL028C	APS1	P35181	156 aa		3.24	□□□□□ -1.89
CAF16	YFL028C	SRL3	P36167	246 aa		3.24	□□□□□ -1.89
CAF16	YFL028C	RPL13B	P40212	199 aa	Known RBP	3.24	□□□□□ -1.89
CAF16	YFL028C	YJR111C	P47148	283 aa	Known RBP	3.24	□□□□□ -1.89
CAF16	YFL028C	YGR050C	P53231	118 aa		3.24	□□□□□ -1.89
CAF16	YFL028C	GRH1	Q04410	372 aa	Known RBP	3.24	□□□□□ -1.89
CAF16	YFL028C	RPL13A	Q12690	199 aa	Predicted RBP	3.24	□□□□□ -1.89
CAF16	YFL028C	YLR146W-A	Q2V2P1	62 aa		3.24	□□□□□ -1.89
CAF16	YFL028C	COA2	Q3E823	68 aa		3.24	□□□□□ -1.89
CAF16	YFL028C	YOR020W-A	Q3E824	90 aa		3.24	□□□□□ -1.89
CAF16	YFL028C	URA5	P13298	226 aa	Known RBP	3.23	□□□□□ -1.89
CAF16	YFL028C	STF2	P16965	84 aa		3.23	□□□□□ -1.89
CAF16	YFL028C	YAR068W	P39564	161 aa		3.23	□□□□□ -1.89
CAF16	YFL028C	YEA6	P39953	335 aa		3.23	□□□□□ -1.89
CAF16	YFL028C	EST3	Q03096	181 aa		3.23	□□□□□ -1.89
CAF16	YFL028C	YGL194C-A	Q2V2P6	80 aa		3.23	□□□□□ -1.89
CAF16	YFL028C	YGL258W-A	Q3E740	77 aa		3.23	□□□□□ -1.89
CAF16	YFL028C	SLM6	P38343	150 aa		3.22	□□□□□ -1.89
CAF16	YFL028C	RPF1	P38805	295 aa	Known RBP	3.22	□□□□□ -1.89
CAF16	YFL028C	LST8	P41318	303 aa		3.22	□□□□□ -1.89
CAF16	YFL028C	RPA43	P46669	326 aa		3.22	□□□□□ -1.89
CAF16	YFL028C	SSU72	P53538	206 aa	Predicted RBP	3.22	□□□□□ -1.89
CAF16	YFL028C	DID2	P69771	204 aa		3.22	□□□□□ -1.89
CAF16	YFL028C	ABF2	Q02486	183 aa		3.22	□□□□□ -1.89
CAF16	YFL028C	DYN2	Q02647	92 aa		3.22	□□□□□ -1.89
CAF16	YFL028C	YML108W	Q03759	105 aa		3.22	□□□□□ -1.89
CAF16	YFL028C	YMR082C	Q04276	118 aa		3.22	□□□□□ -1.89
CAF16	YFL028C	YMR090W	Q04304	227 aa	Known RBP	3.22	□□□□□ -1.89
CAF16	YFL028C	ATG39	Q06159	398 aa		3.22	□□□□□ -1.89
CAF16	YFL028C	FRQ1	Q06389	190 aa		3.22	□□□□□ -1.89
CAF16	YFL028C	YNG1	Q08465	219 aa		3.22	□□□□□ -1.89
CAF16	YFL028C	POC4	Q12245	148 aa	Predicted RBP	3.22	□□□□□ -1.89
CAF16	YFL028C	LSO2	Q3E772	92 aa	Known RBP	3.22	□□□□□ -1.89
CAF16	YFL028C	MAG1	P22134	296 aa	Known RBP	3.21	□□□□□ -1.9
CAF16	YFL028C	YKL102C	P34249	101 aa		3.21	□□□□□ -1.9
CAF16	YFL028C	MRPL38	P35996	138 aa	Predicted RBP	3.21	□□□□□ -1.9
CAF16	YFL028C	YKR032W	P36127	104 aa		3.21	□□□□□ -1.9
CAF16	YFL028C	YPT31	P38555	223 aa	Known RBP	3.21	□□□□□ -1.9
CAF16	YFL028C	DOG2	P38773	246 aa		3.21	□□□□□ -1.9
CAF16	YFL028C	DOG1	P38774	246 aa		3.21	□□□□□ -1.9
CAF16	YFL028C	YHR125W	P38831	101 aa		3.21	□□□□□ -1.9
CAF16	YFL028C	NSA2	P40078	261 aa	Known RBP	3.21	□□□□□ -1.9
CAF16	YFL028C	ARC15	P40518	154 aa	RIP-Chip data	3.21	□□□□□ -1.9	not detected
CAF16	YFL028C	FIP1	P45976	327 aa		3.21	□□□□□ -1.9
CAF16	YFL028C	YGL088W	P53151	121 aa		3.21	□□□□□ -1.9
CAF16	YFL028C	ANT1	Q06497	328 aa		3.21	□□□□□ -1.9
CAF16	YFL028C	IRC23	Q08416	157 aa		3.21	□□□□□ -1.9
CAF16	YFL028C	YHR032W-A	P0C5N6	59 aa		3.2	□□□□□ -1.9
CAF16	YFL028C	YPR170W-B	P0C5R9	85 aa		3.2	□□□□□ -1.9
CAF16	YFL028C	MIG1	P27705	504 aa		3.2	□□□□□ -1.9
CAF16	YFL028C	VMA22	P38784	181 aa		3.2	□□□□□ -1.9
CAF16	YFL028C	SWM2	P40342	146 aa		3.2	□□□□□ -1.9
CAF16	YFL028C	VPS55	P47111	140 aa		3.2	□□□□□ -1.9
CAF16	YFL028C	MMS2	P53152	137 aa		3.2	□□□□□ -1.9
CAF16	YFL028C	JAC1	P53193	184 aa		3.2	□□□□□ -1.9
CAF16	YFL028C	PLP1	Q04004	230 aa		3.2	□□□□□ -1.9
CAF16	YFL028C	YHP1	Q04116	353 aa		3.2	□□□□□ -1.9
CAF16	YFL028C	RAD28	Q12021	506 aa		3.2	□□□□□ -1.9
CAF16	YFL028C	YHR213W-A	Q8TGT4	77 aa		3.2	□□□□□ -1.9
CAF16	YFL028C	ADH3	P07246	375 aa	Known RBP	3.19	□□□□□ -1.9
CAF16	YFL028C	EMP24	P32803	203 aa	Known RBP	3.19	□□□□□ -1.9
CAF16	YFL028C	UPS2	P35200	230 aa		3.19	□□□□□ -1.9
CAF16	YFL028C	GCV3	P39726	170 aa	Predicted RBP	3.19	□□□□□ -1.9
CAF16	YFL028C	YEA4	P40004	342 aa		3.19	□□□□□ -1.9
CAF16	YFL028C	YGR269W	P40326	108 aa		3.19	□□□□□ -1.9
CAF16	YFL028C	AGE2	P40529	298 aa		3.19	□□□□□ -1.9
CAF16	YFL028C	HOR7	Q05827	59 aa		3.19	□□□□□ -1.9
CAF16	YFL028C	FCF2	Q12035	217 aa	Predicted RBP	3.19	□□□□□ -1.9
CAF16	YFL028C	YGR035W-A	Q45U48	73 aa		3.19	□□□□□ -1.9
CAF16	YFL028C	Q0255	P03881	472 aa		3.18	□□□□□ -1.9
CAF16	YFL028C	RPS25B	P0C0T4	108 aa	Known RBP	3.18	□□□□□ -1.9
CAF16	YFL028C	UBI4	P0CG63	381 aa	Known RBP	3.18	□□□□□ -1.9
CAF16	YFL028C	ECM33	P38248	429 aa	Known RBP	3.18	□□□□□ -1.9
CAF16	YFL028C	YJR015W	P47090	510 aa		3.18	□□□□□ -1.9
CAF16	YFL028C	ERG25	P53045	309 aa		3.18	□□□□□ -1.9
CAF16	YFL028C	YGR219W	P53307	113 aa		3.18	□□□□□ -1.9
CAF16	YFL028C	COA4	Q05809	96 aa		3.18	□□□□□ -1.9
CAF16	YFL028C	RPS25A	Q3E792	108 aa	Predicted RBP	3.18	□□□□□ -1.9
CAF16	YFL028C	TDA8	Q6B2U8	126 aa		3.18	□□□□□ -1.9
CAF16	YFL028C	AHT1	P29589	182 aa		3.17	□□□□□ -1.9
CAF16	YFL028C	YBL071C	P38185	102 aa		3.17	□□□□□ -1.9
CAF16	YFL028C	RRT1	P38192	103 aa		3.17	□□□□□ -1.9
CAF16	YFL028C	IRC22	P40006	225 aa		3.17	□□□□□ -1.9
CAF16	YFL028C	CAB4	P53332	305 aa		3.17	□□□□□ -1.9
CAF16	YFL028C	FPR2	P32472	135 aa		3.16	□□□□□ -1.9
CAF16	YFL028C	MRPL28	P36527	147 aa		3.16	□□□□□ -1.9
CAF16	YFL028C	SDH4	P37298	181 aa		3.16	□□□□□ -1.9
CAF16	YFL028C	CSH1	P38287	376 aa		3.16	□□□□□ -1.9
CAF16	YFL028C	YJL144W	P47009	104 aa		3.16	□□□□□ -1.9
CAF16	YFL028C	YJL027C	P47063	138 aa	Predicted RBP	3.16	□□□□□ -1.9
CAF16	YFL028C	MIC27	P50945	234 aa		3.16	□□□□□ -1.9
CAF16	YFL028C	YMR007W	Q03675	126 aa		3.16	□□□□□ -1.9
CAF16	YFL028C	RDS3	Q06835	107 aa	Predicted RBP	3.16	□□□□□ -1.9
CAF16	YFL028C	CDC7	P06243	507 aa		3.15	□□□□□ -1.91
CAF16	YFL028C	SEC4	P07560	215 aa	Known RBP	3.15	□□□□□ -1.91
CAF16	YFL028C	YHR212W-A	P0CX91	67 aa		3.15	□□□□□ -1.91

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