RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	APA2	P22108	325 aa		3.02	□□□□□ -1.93
UBX5	YDR330W	ROX3	P25046	220 aa		3.02	□□□□□ -1.93
UBX5	YDR330W	NTF2	P33331	125 aa	Known RBP	3.02	□□□□□ -1.93
UBX5	YDR330W	CPR5	P35176	225 aa		3.02	□□□□□ -1.93
UBX5	YDR330W	YHL037C	P38733	133 aa		3.02	□□□□□ -1.93
UBX5	YDR330W	YHR138C	P38841	114 aa	Predicted RBP	3.02	□□□□□ -1.93
UBX5	YDR330W	PHS1	P40857	217 aa		3.02	□□□□□ -1.93
UBX5	YDR330W	VMA21	P41806	77 aa		3.02	□□□□□ -1.93
UBX5	YDR330W	YFL051C	P43552	160 aa		3.02	□□□□□ -1.93
UBX5	YDR330W	ARP3	P47117	449 aa	Known RBP	3.02	□□□□□ -1.93
UBX5	YDR330W	YGL262W	P53054	175 aa		3.02	□□□□□ -1.93
UBX5	YDR330W	PAU4	P53427	120 aa		3.02	□□□□□ -1.93
UBX5	YDR330W	YDR114C	Q04597	100 aa		3.02	□□□□□ -1.93
UBX5	YDR330W	DXO1	Q06349	442 aa		3.02	□□□□□ -1.93
UBX5	YDR330W	PAU1	P0CE88	120 aa		3.01	□□□□□ -1.93
UBX5	YDR330W	PAU14	P0CE89	120 aa		3.01	□□□□□ -1.93
UBX5	YDR330W	PAU6	P0CE90	120 aa		3.01	□□□□□ -1.93
UBX5	YDR330W	PAU18	P0CE91	120 aa		3.01	□□□□□ -1.93
UBX5	YDR330W	PAU8	P0CE92	120 aa		3.01	□□□□□ -1.93
UBX5	YDR330W	PAU11	P0CE93	120 aa		3.01	□□□□□ -1.93
UBX5	YDR330W	RPB3	P16370	318 aa	Known RBP	3.01	□□□□□ -1.93
UBX5	YDR330W	YMR31	P19955	123 aa		3.01	□□□□□ -1.93
UBX5	YDR330W	SEC59	P20048	519 aa		3.01	□□□□□ -1.93
UBX5	YDR330W	SPO13	P23624	291 aa		3.01	□□□□□ -1.93
UBX5	YDR330W	SDH4	P37298	181 aa		3.01	□□□□□ -1.93
UBX5	YDR330W	PAU13	P38725	120 aa		3.01	□□□□□ -1.93
UBX5	YDR330W	COX15	P40086	486 aa		3.01	□□□□□ -1.93
UBX5	YDR330W	YGR269W	P40326	108 aa		3.01	□□□□□ -1.93
UBX5	YDR330W	PAU15	P40585	124 aa		3.01	□□□□□ -1.93
UBX5	YDR330W	TTI2	P47168	421 aa		3.01	□□□□□ -1.93
UBX5	YDR330W	PAU10	Q03050	120 aa		3.01	□□□□□ -1.93
UBX5	YDR330W	PAU20	Q08322	120 aa		3.01	□□□□□ -1.93
UBX5	YDR330W	RFM1	Q12192	310 aa		3.01	□□□□□ -1.93
UBX5	YDR330W	SME1	Q12330	94 aa	Predicted RBP	3.01	□□□□□ -1.93
UBX5	YDR330W	YLR118C	Q12354	227 aa		3.01	□□□□□ -1.93
UBX5	YDR330W	PAU9	Q3E770	120 aa		3.01	□□□□□ -1.93
UBX5	YDR330W	SEN1	Q00416	2231 aa	Known RBP	3.01	□□□□□ -1.93
UBX5	YDR330W	PET494	P07390	489 aa	Predicted RBP	3	□□□□□ -1.93
UBX5	YDR330W	RPS25B	P0C0T4	108 aa	Known RBP	3	□□□□□ -1.93
UBX5	YDR330W	RPS23A	P0CX29	145 aa	Known RBP	3	□□□□□ -1.93
UBX5	YDR330W	RPS23B	P0CX30	145 aa		3	□□□□□ -1.93
UBX5	YDR330W	URA5	P13298	226 aa	Known RBP	3	□□□□□ -1.93
UBX5	YDR330W	QCR9	P22289	66 aa		3	□□□□□ -1.93
UBX5	YDR330W	SPS18	P32572	300 aa		3	□□□□□ -1.93
UBX5	YDR330W	SHB17	P36136	271 aa	Known RBP	3	□□□□□ -1.93
UBX5	YDR330W	MRPS9	P38120	278 aa		3	□□□□□ -1.93
UBX5	YDR330W	YBR013C	P38215	129 aa		3	□□□□□ -1.93
UBX5	YDR330W	TRS20	P38334	175 aa		3	□□□□□ -1.93
UBX5	YDR330W	CUE1	P38428	203 aa		3	□□□□□ -1.93
UBX5	YDR330W	YPS5	P53057	165 aa		3	□□□□□ -1.93
UBX5	YDR330W	AVO2	Q04749	426 aa		3	□□□□□ -1.93
UBX5	YDR330W	YPS3	Q12303	508 aa		3	□□□□□ -1.93
UBX5	YDR330W	RPS25A	Q3E792	108 aa	Predicted RBP	3	□□□□□ -1.93
UBX5	YDR330W	RPL39	P04650	51 aa		2.99	□□□□□ -1.93
UBX5	YDR330W	CDC7	P06243	507 aa		2.99	□□□□□ -1.93
UBX5	YDR330W	FCY2	P17064	533 aa		2.99	□□□□□ -1.93
UBX5	YDR330W	RNA15	P25299	296 aa	Predicted RBP	2.99	□□□□□ -1.93
UBX5	YDR330W	YBR220C	P38318	560 aa		2.99	□□□□□ -1.93
UBX5	YDR330W	YPT31	P38555	223 aa	Known RBP	2.99	□□□□□ -1.93
UBX5	YDR330W	RTC3	P38804	111 aa	Predicted RBP	2.99	□□□□□ -1.93
UBX5	YDR330W	MGA1	P53050	456 aa		2.99	□□□□□ -1.93
UBX5	YDR330W	LPP1	Q04396	274 aa		2.99	□□□□□ -1.93
UBX5	YDR330W	RAD28	Q12021	506 aa		2.99	□□□□□ -1.93
UBX5	YDR330W	POC4	Q12245	148 aa	Predicted RBP	2.99	□□□□□ -1.93
UBX5	YDR330W	YGL258W-A	Q3E740	77 aa		2.99	□□□□□ -1.93
UBX5	YDR330W	YOS1	Q3E834	85 aa		2.99	□□□□□ -1.93
UBX5	YDR330W	YMR105W-A	Q8TGS8	64 aa		2.99	□□□□□ -1.93
UBX5	YDR330W	RPL9A	P05738	191 aa	Known RBP	2.98	□□□□□ -1.93
UBX5	YDR330W	ACP1	P32463	125 aa		2.98	□□□□□ -1.93
UBX5	YDR330W	ALK2	P32789	676 aa	Predicted RBP	2.98	□□□□□ -1.93
UBX5	YDR330W	PIR5	P46999	287 aa		2.98	□□□□□ -1.93
UBX5	YDR330W	FYV6	P53913	173 aa		2.98	□□□□□ -1.93
UBX5	YDR330W	SED1	Q01589	338 aa		2.98	□□□□□ -1.93
UBX5	YDR330W	YMR007W	Q03675	126 aa		2.98	□□□□□ -1.93
UBX5	YDR330W	SCW10	Q04951	389 aa		2.98	□□□□□ -1.93
UBX5	YDR330W	FRQ1	Q06389	190 aa		2.98	□□□□□ -1.93
UBX5	YDR330W	MCH1	Q07376	486 aa		2.98	□□□□□ -1.93
UBX5	YDR330W	CSM4	Q08955	156 aa		2.98	□□□□□ -1.93
UBX5	YDR330W	CMC2	Q3E7A4	109 aa		2.98	□□□□□ -1.93
UBX5	YDR330W	AIM29	P36154	155 aa		2.98	□□□□□ -1.93
UBX5	YDR330W	NSA2	P40078	261 aa	Known RBP	2.98	□□□□□ -1.93
UBX5	YDR330W	RPL9B	P51401	191 aa	Known RBP	2.98	□□□□□ -1.93
UBX5	YDR330W	YNL046W	P53956	172 aa		2.98	□□□□□ -1.93
UBX5	YDR330W	DYN2	Q02647	92 aa		2.98	□□□□□ -1.93
UBX5	YDR330W	ARC18	Q05933	178 aa	Known RBP	2.98	□□□□□ -1.93
UBX5	YDR330W	MHR1	Q06630	226 aa		2.98	□□□□□ -1.93
UBX5	YDR330W	TMC1	Q08422	150 aa	Predicted RBP	2.98	□□□□□ -1.93
UBX5	YDR330W	RAX2	Q12465	1220 aa		2.98	□□□□□ -1.93
UBX5	YDR330W	YMR316C-A	I2HB70	103 aa		2.97	□□□□□ -1.93
UBX5	YDR330W	NHP6A	P11632	93 aa	Known RBP	2.97	□□□□□ -1.93
UBX5	YDR330W	NOP1	P15646	327 aa	Known RBP	2.97	□□□□□ -1.93
UBX5	YDR330W	SMP1	P38128	452 aa		2.97	□□□□□ -1.93
UBX5	YDR330W	DER1	P38307	211 aa		2.97	□□□□□ -1.93
UBX5	YDR330W	YGP1	P38616	354 aa	Known RBP	2.97	□□□□□ -1.93
UBX5	YDR330W	CTR2	P38865	189 aa		2.97	□□□□□ -1.93
UBX5	YDR330W	HSP10	P38910	106 aa		2.97	□□□□□ -1.93
UBX5	YDR330W	RRT13	P40042	185 aa		2.97	□□□□□ -1.93
UBX5	YDR330W	PRE5	P40302	234 aa	Known RBP	2.97	□□□□□ -1.93
UBX5	YDR330W	YJR015W	P47090	510 aa		2.97	□□□□□ -1.93
UBX5	YDR330W	MIC27	P50945	234 aa		2.97	□□□□□ -1.93

Retrieved 100 of 5,963 RNA–protein pairs in 90.2 ms