RNA–Protein interactions for RNA: YHR120W

MSH1, Transcript of DNA-binding protein of the mitochondria, yeast

Gene MSH1, Length 2,880 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSH1	YHR120W	PAM18	Q07914	168 aa		4.21	□□□□□ -1.74
MSH1	YHR120W	YOR292C	Q08743	309 aa		4.21	□□□□□ -1.74
MSH1	YHR120W	HUG1	Q6Q5K6	68 aa		4.21	□□□□□ -1.74
MSH1	YHR120W	UPS2	P35200	230 aa		4.2	□□□□□ -1.74
MSH1	YHR120W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
MSH1	YHR120W	ATG27	P46989	271 aa		4.2	□□□□□ -1.74
MSH1	YHR120W	YDR114C	Q04597	100 aa		4.2	□□□□□ -1.74
MSH1	YHR120W	CSI2	Q08054	341 aa		4.2	□□□□□ -1.74
MSH1	YHR120W	QCR9	P22289	66 aa		4.2	□□□□□ -1.74
MSH1	YHR120W	AFR1	P33304	620 aa		4.2	□□□□□ -1.74
MSH1	YHR120W	YER079W	P40052	210 aa	Known RBP	4.2	□□□□□ -1.74
MSH1	YHR120W	ABM1	P47146	123 aa		4.2	□□□□□ -1.74
MSH1	YHR120W	RIB4	P50861	169 aa	Predicted RBP	4.2	□□□□□ -1.74
MSH1	YHR120W	PDR17	P53844	350 aa		4.2	□□□□□ -1.74
MSH1	YHR120W	ATC1	Q04005	294 aa		4.2	□□□□□ -1.74
MSH1	YHR120W	YOR352W	Q08816	343 aa		4.2	□□□□□ -1.74
MSH1	YHR120W	ERV2	Q12284	196 aa		4.2	□□□□□ -1.74
MSH1	YHR120W	BGL2	P15703	313 aa	Known RBP	4.2	□□□□□ -1.74
MSH1	YHR120W	PSD1	P39006	500 aa		4.2	□□□□□ -1.74
MSH1	YHR120W	PAC2	P39937	518 aa		4.2	□□□□□ -1.74
MSH1	YHR120W	TAF4	P50105	388 aa		4.2	□□□□□ -1.74
MSH1	YHR120W	MOT3	P54785	490 aa	Known RBP	4.2	□□□□□ -1.74
MSH1	YHR120W	YMR254C	Q04838	102 aa		4.2	□□□□□ -1.74
MSH1	YHR120W	TMA10	Q06177	86 aa		4.2	□□□□□ -1.74
MSH1	YHR120W	ATG5	Q12380	294 aa		4.2	□□□□□ -1.74
MSH1	YHR120W	TMA17	Q12513	150 aa		4.2	□□□□□ -1.74
MSH1	YHR120W	SWD3	P38123	315 aa		4.19	□□□□□ -1.74
MSH1	YHR120W	YGR269W	P40326	108 aa		4.19	□□□□□ -1.74
MSH1	YHR120W	GON7	P46984	123 aa		4.19	□□□□□ -1.74
MSH1	YHR120W	GEP7	P53171	287 aa		4.19	□□□□□ -1.74
MSH1	YHR120W	PIN3	Q06449	215 aa		4.19	□□□□□ -1.74
MSH1	YHR120W	HRD1	Q08109	551 aa		4.19	□□□□□ -1.74
MSH1	YHR120W	ALG6	Q12001	544 aa	Known RBP	4.19	□□□□□ -1.74
MSH1	YHR120W	SME1	Q12330	94 aa	Predicted RBP	4.19	□□□□□ -1.74
MSH1	YHR120W	MPD1	Q12404	318 aa	Known RBP	4.19	□□□□□ -1.74
MSH1	YHR120W	RPS22A	P0C0W1	130 aa	Known RBP	4.19	□□□□□ -1.74
MSH1	YHR120W	RPB9	P27999	122 aa		4.19	□□□□□ -1.74
MSH1	YHR120W	VMA11	P32842	164 aa		4.19	□□□□□ -1.74
MSH1	YHR120W	RPL14A	P36105	138 aa	Known RBP	4.19	□□□□□ -1.74
MSH1	YHR120W	NTC20	P38302	140 aa	Predicted RBP	4.19	□□□□□ -1.74
MSH1	YHR120W	RPL14B	P38754	138 aa	Known RBP	4.19	□□□□□ -1.74
MSH1	YHR120W	YNR064C	P53750	290 aa		4.19	□□□□□ -1.74
MSH1	YHR120W	STP4	Q07351	490 aa		4.19	□□□□□ -1.74
MSH1	YHR120W	YBR255C-A	Q3E776	120 aa		4.19	□□□□□ -1.74
MSH1	YHR120W	YNR034W-A	Q3E841	98 aa		4.19	□□□□□ -1.74
MSH1	YHR120W	RPL15A	P05748	204 aa	Known RBP	4.18	□□□□□ -1.74
MSH1	YHR120W	IRC22	P40006	225 aa		4.18	□□□□□ -1.74
MSH1	YHR120W	YIL077C	P40508	320 aa		4.18	□□□□□ -1.74
MSH1	YHR120W	HCH1	P53834	153 aa		4.18	□□□□□ -1.74
MSH1	YHR120W	RPL15B	P54780	204 aa	Predicted RBP	4.18	□□□□□ -1.74
MSH1	YHR120W	UPS1	Q05776	175 aa		4.18	□□□□□ -1.74
MSH1	YHR120W	YOR029W	Q12243	111 aa		4.18	□□□□□ -1.74
MSH1	YHR120W	BOL1	Q3E793	110 aa		4.18	□□□□□ -1.74
MSH1	YHR120W	YER145C-A	A0A023PYF4	145 aa		4.18	□□□□□ -1.74
MSH1	YHR120W	GZF3	P42944	551 aa	Known RBP	4.18	□□□□□ -1.74
MSH1	YHR120W	GPI2	P46961	280 aa		4.18	□□□□□ -1.74
MSH1	YHR120W	CCW14	O13547	238 aa		4.17	□□□□□ -1.74
MSH1	YHR120W	TY1A-H	P0C2I4	478 aa	Known RBP	4.17	□□□□□ -1.74
MSH1	YHR120W	GPI18	P38211	433 aa		4.17	□□□□□ -1.74
MSH1	YHR120W	PTC7	P38797	343 aa		4.17	□□□□□ -1.74
MSH1	YHR120W	LOC1	P43586	204 aa	Predicted RBP	4.17	□□□□□ -1.74
MSH1	YHR120W	TTI2	P47168	421 aa		4.17	□□□□□ -1.74
MSH1	YHR120W	SUT1	P53032	299 aa	Known RBP	4.17	□□□□□ -1.74
MSH1	YHR120W	APS2	Q00381	147 aa		4.17	□□□□□ -1.74
MSH1	YHR120W	YPL067C	Q02754	198 aa		4.17	□□□□□ -1.74
MSH1	YHR120W	RPL25	P04456	142 aa	Known RBP	4.17	□□□□□ -1.74
MSH1	YHR120W	YBL059W	P34224	193 aa		4.17	□□□□□ -1.74
MSH1	YHR120W	CPR5	P35176	225 aa		4.17	□□□□□ -1.74
MSH1	YHR120W	YGR050C	P53231	118 aa		4.17	□□□□□ -1.74
MSH1	YHR120W	LST7	P53237	242 aa		4.17	□□□□□ -1.74
MSH1	YHR120W	DPB4	Q04603	196 aa	Known RBP	4.17	□□□□□ -1.74
MSH1	YHR120W	YPS3	Q12303	508 aa		4.17	□□□□□ -1.74
MSH1	YHR120W	YMR105W-A	Q8TGS8	64 aa		4.17	□□□□□ -1.74
MSH1	YHR120W	ATG40	Q99325	256 aa		4.17	□□□□□ -1.74
MSH1	YHR120W	ILV5	P06168	395 aa	Known RBP	4.16	□□□□□ -1.74
MSH1	YHR120W	SPO13	P23624	291 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	COQ3	P27680	312 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	SRP21	P32342	167 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	NSA2	P40078	261 aa	Known RBP	4.16	□□□□□ -1.74
MSH1	YHR120W	OST3	P48439	350 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	TSA2	Q04120	196 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	FYV7	Q12247	151 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	YPR071W	Q12346	211 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	LAS17	Q12446	633 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	YMR31	P19955	123 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	IMP1	P28627	190 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	IES6	P32617	166 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	RTC3	P38804	111 aa	Predicted RBP	4.16	□□□□□ -1.74
MSH1	YHR120W	SEN15	Q04675	128 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	DAL4	Q04895	635 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	IRC25	Q07951	179 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	ATX2	Q12067	313 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	ATP5	P09457	212 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	ELO2	P25358	347 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	YKL102C	P34249	101 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	CYB5	P40312	120 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	RTS2	P40962	232 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	YAP1802	P53309	568 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	RIM9	Q04734	239 aa		4.16	□□□□□ -1.74
MSH1	YHR120W	MHR1	Q06630	226 aa		4.16	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 22.3 ms