RNA–Protein interactions for RNA: YDR073W

SNF11, Transcript of Subunit of the SWI/SNF chromatin remodeling complex, yeast

Gene SNF11, Length 510 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNF11	YDR073W	CIS3	P47001	227 aa		3.89	□□□□□ -1.79
SNF11	YDR073W	RPL26B	P53221	127 aa	Known RBP	3.89	□□□□□ -1.79
SNF11	YDR073W	GAL83	Q04739	417 aa		3.89	□□□□□ -1.79
SNF11	YDR073W	YPD1	Q07688	167 aa		3.89	□□□□□ -1.79
SNF11	YDR073W	FYV12	Q08559	129 aa		3.89	□□□□□ -1.79
SNF11	YDR073W	FSF1	Q12029	327 aa	Known RBP	3.89	□□□□□ -1.79
SNF11	YDR073W	TIR1	P10863	254 aa		3.88	□□□□□ -1.79
SNF11	YDR073W	YBR220C	P38318	560 aa		3.88	□□□□□ -1.79
SNF11	YDR073W	YNL200C	P40165	246 aa	Known RBP	3.88	□□□□□ -1.79
SNF11	YDR073W	YGL193C	P53097	103 aa		3.88	□□□□□ -1.79
SNF11	YDR073W	HHO1	P53551	258 aa		3.88	□□□□□ -1.79
SNF11	YDR073W	YKR005C	Q02203	525 aa		3.88	□□□□□ -1.79
SNF11	YDR073W	SHH3	Q04487	196 aa		3.88	□□□□□ -1.79
SNF11	YDR073W	YPR195C	Q06594	109 aa		3.88	□□□□□ -1.79
SNF11	YDR073W	HRD1	Q08109	551 aa		3.88	□□□□□ -1.79
SNF11	YDR073W	TRM3	Q07527	1436 aa		3.87	□□□□□ -1.79
SNF11	YDR073W	PTC1	P35182	281 aa		3.87	□□□□□ -1.79
SNF11	YDR073W	PRS3	P38689	320 aa	Known RBP	3.87	□□□□□ -1.79
SNF11	YDR073W	FYV4	P38783	130 aa	Predicted RBP	3.87	□□□□□ -1.79
SNF11	YDR073W	SPC25	P40014	221 aa		3.87	□□□□□ -1.79
SNF11	YDR073W	MPC3	P53311	146 aa		3.87	□□□□□ -1.79
SNF11	YDR073W	YDR366C	P87287	132 aa		3.87	□□□□□ -1.79
SNF11	YDR073W	COF1	Q03048	143 aa	Known RBP	3.87	□□□□□ -1.79
SNF11	YDR073W	RAD6	P06104	172 aa		3.86	□□□□□ -1.79
SNF11	YDR073W	HSP30	P25619	332 aa		3.86	□□□□□ -1.79
SNF11	YDR073W	RPC19	P28000	142 aa	Known RBP	3.86	□□□□□ -1.79
SNF11	YDR073W	FMT1	P32785	401 aa		3.86	□□□□□ -1.79
SNF11	YDR073W	TVP23	P38962	199 aa		3.86	□□□□□ -1.79
SNF11	YDR073W	YNR077C	P53758	84 aa		3.86	□□□□□ -1.79
SNF11	YDR073W	SLM2	P53955	656 aa		3.86	□□□□□ -1.79
SNF11	YDR073W	YDR391C	Q04170	232 aa		3.86	□□□□□ -1.79
SNF11	YDR073W	YMR253C	Q04835	414 aa		3.86	□□□□□ -1.79
SNF11	YDR073W	RDS3	Q06835	107 aa	Predicted RBP	3.86	□□□□□ -1.79
SNF11	YDR073W	MIG1	P27705	504 aa		3.85	□□□□□ -1.79
SNF11	YDR073W	YER181C	P40097	107 aa		3.85	□□□□□ -1.79
SNF11	YDR073W	YDR278C	Q05612	105 aa		3.85	□□□□□ -1.79
SNF11	YDR073W	SCL1	P21243	252 aa	Known RBP	3.84	□□□□□ -1.79
SNF11	YDR073W	ERV15	P38312	142 aa		3.84	□□□□□ -1.79
SNF11	YDR073W	YNR062C	P53748	327 aa		3.84	□□□□□ -1.79
SNF11	YDR073W	FMN1	Q03778	218 aa		3.84	□□□□□ -1.79
SNF11	YDR073W	ATP20	Q12233	115 aa		3.84	□□□□□ -1.79
SNF11	YDR073W	ATG40	Q99325	256 aa		3.84	□□□□□ -1.79
SNF11	YDR073W	FZF1	P32805	299 aa		3.83	□□□□□ -1.8
SNF11	YDR073W	PAM17	P36147	197 aa		3.83	□□□□□ -1.8
SNF11	YDR073W	HTD2	P38790	280 aa	Known RBP	3.83	□□□□□ -1.8
SNF11	YDR073W	TIR3	P40552	269 aa		3.83	□□□□□ -1.8
SNF11	YDR073W	YJR146W	P47174	117 aa		3.83	□□□□□ -1.8
SNF11	YDR073W	YGR039W	P53225	103 aa		3.83	□□□□□ -1.8
SNF11	YDR073W	SPC24	Q04477	213 aa		3.83	□□□□□ -1.8
SNF11	YDR073W	SYM1	Q06563	197 aa		3.83	□□□□□ -1.8
SNF11	YDR073W	ATP14	Q12349	124 aa		3.83	□□□□□ -1.8
SNF11	YDR073W	RAD50	P12753	1312 aa		3.82	□□□□□ -1.8
SNF11	YDR073W	SEN2	P16658	377 aa		3.82	□□□□□ -1.8
SNF11	YDR073W	YER135C	P40082	130 aa		3.82	□□□□□ -1.8
SNF11	YDR073W	RIO2	P40160	425 aa	Known RBP	3.82	□□□□□ -1.8
SNF11	YDR073W	YEL028W	P39989	153 aa		3.81	□□□□□ -1.8
SNF11	YDR073W	GPI2	P46961	280 aa		3.81	□□□□□ -1.8
SNF11	YDR073W	BOL2	P53082	120 aa		3.81	□□□□□ -1.8
SNF11	YDR073W	GRX5	Q02784	150 aa		3.81	□□□□□ -1.8
SNF11	YDR073W	IRC23	Q08416	157 aa		3.81	□□□□□ -1.8
SNF11	YDR073W	PEX4	P29340	183 aa		3.8	□□□□□ -1.8
SNF11	YDR073W	SRP21	P32342	167 aa		3.8	□□□□□ -1.8
SNF11	YDR073W	SPT14	P32363	452 aa		3.8	□□□□□ -1.8
SNF11	YDR073W	RRT1	P38192	103 aa		3.8	□□□□□ -1.8
SNF11	YDR073W	YNL217W	P40152	326 aa		3.8	□□□□□ -1.8
SNF11	YDR073W	YJL027C	P47063	138 aa	Predicted RBP	3.8	□□□□□ -1.8
SNF11	YDR073W	VMA10	P48836	114 aa	Known RBP	3.8	□□□□□ -1.8
SNF11	YDR073W	TIM8	P57744	87 aa		3.8	□□□□□ -1.8
SNF11	YDR073W	CGI121	Q03705	181 aa	Known RBP	3.8	□□□□□ -1.8
SNF11	YDR073W	SLO1	Q3E784	85 aa		3.8	□□□□□ -1.8
SNF11	YDR073W	PHO13	P19881	312 aa		3.79	□□□□□ -1.8
SNF11	YDR073W	PHO88	P38264	188 aa	Predicted RBP	3.79	□□□□□ -1.8
SNF11	YDR073W	YJL218W	P40892	196 aa	Known RBP	3.79	□□□□□ -1.8
SNF11	YDR073W	YNL033W	P53964	284 aa		3.79	□□□□□ -1.8
SNF11	YDR073W	FCY1	Q12178	158 aa		3.79	□□□□□ -1.8
SNF11	YDR073W	RPO41	P13433	1351 aa	Known RBP	3.78	□□□□□ -1.8
SNF11	YDR073W	YLR236C	A0A023PZG4	107 aa		3.78	□□□□□ -1.8
SNF11	YDR073W	MRPL24	P36525	258 aa	Predicted RBP	3.78	□□□□□ -1.8
SNF11	YDR073W	RPS20	P38701	121 aa	Known RBP	3.78	□□□□□ -1.8
SNF11	YDR073W	RCF2	P53721	224 aa		3.78	□□□□□ -1.8
SNF11	YDR073W	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	3.78	□□□□□ -1.8	not detected
SNF11	YDR073W	SPC3	Q12133	184 aa		3.78	□□□□□ -1.8
SNF11	YDR073W	YPR096C	O13587	100 aa		3.77	□□□□□ -1.81
SNF11	YDR073W	YBR209W	P38311	105 aa		3.77	□□□□□ -1.81
SNF11	YDR073W	GLC8	P41818	229 aa		3.77	□□□□□ -1.81
SNF11	YDR073W	SUI1	P32911	108 aa	Known RBP	3.76	□□□□□ -1.81
SNF11	YDR073W	YEL073C	P39974	107 aa		3.76	□□□□□ -1.81
SNF11	YDR073W	APS3	P47064	194 aa		3.76	□□□□□ -1.81
SNF11	YDR073W	GIS2	P53849	153 aa	Known RBP RIP-Chip data	3.76	□□□□□ -1.81	not detected
SNF11	YDR073W	LIP1	Q03579	150 aa		3.76	□□□□□ -1.81
SNF11	YDR073W	CUE4	Q04201	117 aa	Predicted RBP	3.76	□□□□□ -1.81
SNF11	YDR073W	SDH7	Q04401	133 aa		3.76	□□□□□ -1.81
SNF11	YDR073W	CNL1	Q06333	122 aa		3.76	□□□□□ -1.81
SNF11	YDR073W	VPS68	Q12016	184 aa		3.76	□□□□□ -1.81
SNF11	YDR073W	DUR1,2	P32528	1835 aa	Known RBP	3.75	□□□□□ -1.81
SNF11	YDR073W	SDH4	P37298	181 aa		3.75	□□□□□ -1.81
SNF11	YDR073W	YNR064C	P53750	290 aa		3.75	□□□□□ -1.81
SNF11	YDR073W	EMC6	Q12431	108 aa		3.75	□□□□□ -1.81
SNF11	YDR073W	MET5	P47169	1442 aa		3.75	□□□□□ -1.81
SNF11	YDR073W	RAS2	P01120	322 aa	Known RBP	3.74	□□□□□ -1.81

Retrieved 100 of 5,963 RNA–protein pairs in 37.9 ms