RNA–Protein interactions for RNA: YPR108W

RPN7, Transcript of Essential non-ATPase regulatory subunit of the 26S proteasome, yeast

Gene RPN7, Length 1,290 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN7	YPR108W	YIP1	P53039	248 aa		4.98	□□□□□ -1.61
RPN7	YPR108W	FSH2	Q05015	223 aa		4.98	□□□□□ -1.61
RPN7	YPR108W	ARR2	Q06597	130 aa		4.98	□□□□□ -1.61
RPN7	YPR108W	SWT1	Q12104	458 aa		4.98	□□□□□ -1.61
RPN7	YPR108W	YPS3	Q12303	508 aa		4.98	□□□□□ -1.61
RPN7	YPR108W	BLM10	P43583	2143 aa		4.97	□□□□□ -1.61
RPN7	YPR108W	RIP1	P08067	215 aa		4.97	□□□□□ -1.61
RPN7	YPR108W	RPS22A	P0C0W1	130 aa	Known RBP	4.97	□□□□□ -1.61
RPN7	YPR108W	HMX1	P32339	317 aa		4.97	□□□□□ -1.61
RPN7	YPR108W	ATG8	P38182	117 aa	RIP-Chip data	4.97	□□□□□ -1.61	not detected
RPN7	YPR108W	FIG1	P38224	298 aa		4.97	□□□□□ -1.61
RPN7	YPR108W	CYB5	P40312	120 aa		4.97	□□□□□ -1.61
RPN7	YPR108W	ATF1	P40353	525 aa		4.97	□□□□□ -1.61
RPN7	YPR108W	PAU15	P40585	124 aa		4.97	□□□□□ -1.61
RPN7	YPR108W	LSM8	P47093	109 aa	Known RBP	4.97	□□□□□ -1.61
RPN7	YPR108W	YNL046W	P53956	172 aa		4.97	□□□□□ -1.61
RPN7	YPR108W	CRZ1	P53968	678 aa		4.97	□□□□□ -1.61
RPN7	YPR108W	YPL077C	Q02831	240 aa		4.97	□□□□□ -1.61
RPN7	YPR108W	ASM4	Q05166	528 aa		4.97	□□□□□ -1.61
RPN7	YPR108W	YDL218W	Q07629	317 aa		4.97	□□□□□ -1.61
RPN7	YPR108W	YDL242W	Q07746	117 aa		4.97	□□□□□ -1.61
RPN7	YPR108W	IRC25	Q07951	179 aa		4.97	□□□□□ -1.61
RPN7	YPR108W	RAD28	Q12021	506 aa		4.97	□□□□□ -1.61
RPN7	YPR108W	GLT1	Q12680	2145 aa	Known RBP	4.96	□□□□□ -1.62
RPN7	YPR108W	RPS25B	P0C0T4	108 aa	Known RBP	4.96	□□□□□ -1.62
RPN7	YPR108W	ROX3	P25046	220 aa		4.96	□□□□□ -1.62
RPN7	YPR108W	POP5	P28005	173 aa		4.96	□□□□□ -1.62
RPN7	YPR108W	YKL107W	P34251	309 aa		4.96	□□□□□ -1.62
RPN7	YPR108W	YER121W	P40076	114 aa		4.96	□□□□□ -1.62
RPN7	YPR108W	PHS1	P40857	217 aa		4.96	□□□□□ -1.62
RPN7	YPR108W	BNA1	P47096	177 aa		4.96	□□□□□ -1.62
RPN7	YPR108W	INN1	P53901	409 aa		4.96	□□□□□ -1.62
RPN7	YPR108W	SDH7	Q04401	133 aa		4.96	□□□□□ -1.62
RPN7	YPR108W	YOR015W	Q12169	119 aa		4.96	□□□□□ -1.62
RPN7	YPR108W	LSO2	Q3E772	92 aa	Known RBP	4.96	□□□□□ -1.62
RPN7	YPR108W	RPS25A	Q3E792	108 aa	Predicted RBP	4.96	□□□□□ -1.62
RPN7	YPR108W	COA6	Q3E846	104 aa		4.96	□□□□□ -1.62
RPN7	YPR108W	TY1A-LR4	P0C2I8	440 aa	Known RBP	4.95	□□□□□ -1.62
RPN7	YPR108W	TY1A-DR6	P0CX70	440 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	TY1A-ER1	P0CX71	440 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	TY1A-LR2	P0CX72	440 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	TY1A-PL	P0CX73	440 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	TY1A-JR1	P0CX74	440 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	TY1A-LR3	P0CX75	440 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	TY1A-ML2	P0CX76	440 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	URA5	P13298	226 aa	Known RBP	4.95	□□□□□ -1.62
RPN7	YPR108W	FCY2	P17064	533 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	APA2	P22108	325 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	SIP1	P32578	815 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	RAD23	P32628	398 aa	Known RBP	4.95	□□□□□ -1.62
RPN7	YPR108W	MRPS5	P33759	307 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	YOX1	P34161	385 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	CDS1	P38221	457 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	PSD1	P39006	500 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	NSA2	P40078	261 aa	Known RBP	4.95	□□□□□ -1.62
RPN7	YPR108W	COX15	P40086	486 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	RFC2	P40348	353 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.95	□□□□□ -1.62	not detected
RPN7	YPR108W	MIC27	P50945	234 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	YGR050C	P53231	118 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	WSC2	P53832	503 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	DAD3	P69850	94 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	RPL21A	Q02753	160 aa	Known RBP	4.95	□□□□□ -1.62
RPN7	YPR108W	EST3	Q03096	181 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	MCH1	Q07376	486 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	PML1	Q07930	204 aa	Predicted RBP	4.95	□□□□□ -1.62
RPN7	YPR108W	TY1A-GR1	Q12085	440 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	RFM1	Q12192	310 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	PRR2	Q12310	699 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	RPL21B	Q12672	160 aa	Known RBP	4.95	□□□□□ -1.62
RPN7	YPR108W	BOL1	Q3E793	110 aa		4.95	□□□□□ -1.62
RPN7	YPR108W	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	4.95	□□□□□ -1.62
RPN7	YPR108W	TY1A-OL	Q92392	440 aa	Known RBP	4.95	□□□□□ -1.62
RPN7	YPR108W	COX2	P00410	251 aa		4.94	□□□□□ -1.62
RPN7	YPR108W	NHP6A	P11632	93 aa	Known RBP	4.94	□□□□□ -1.62
RPN7	YPR108W	PHO85	P17157	305 aa		4.94	□□□□□ -1.62
RPN7	YPR108W	HSP12	P22943	109 aa	Known RBP	4.94	□□□□□ -1.62
RPN7	YPR108W	SPO13	P23624	291 aa		4.94	□□□□□ -1.62
RPN7	YPR108W	AFR1	P33304	620 aa		4.94	□□□□□ -1.62
RPN7	YPR108W	VMA21	P41806	77 aa		4.94	□□□□□ -1.62
RPN7	YPR108W	YNR064C	P53750	290 aa		4.94	□□□□□ -1.62
RPN7	YPR108W	BOR1	P53838	576 aa		4.94	□□□□□ -1.62
RPN7	YPR108W	YMR279C	Q03263	540 aa		4.94	□□□□□ -1.62
RPN7	YPR108W	DXO1	Q06349	442 aa		4.94	□□□□□ -1.62
RPN7	YPR108W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.94	□□□□□ -1.62	not detected
RPN7	YPR108W	RNH203	Q12338	110 aa		4.94	□□□□□ -1.62
RPN7	YPR108W	MPD1	Q12404	318 aa	Known RBP	4.94	□□□□□ -1.62
RPN7	YPR108W	FOL3	Q12676	427 aa	Predicted RBP	4.94	□□□□□ -1.62
RPN7	YPR108W	ILV5	P06168	395 aa	Known RBP	4.93	□□□□□ -1.62
RPN7	YPR108W	BGL2	P15703	313 aa	Known RBP	4.93	□□□□□ -1.62
RPN7	YPR108W	TOM40	P23644	387 aa	Known RBP	4.93	□□□□□ -1.62
RPN7	YPR108W	YFL054C	P43549	646 aa		4.93	□□□□□ -1.62
RPN7	YPR108W	BNA2	P47125	453 aa		4.93	□□□□□ -1.62
RPN7	YPR108W	ABM1	P47146	123 aa		4.93	□□□□□ -1.62
RPN7	YPR108W	SMM1	P53720	384 aa	Known RBP	4.93	□□□□□ -1.62
RPN7	YPR108W	SMT3	Q12306	101 aa	Known RBP	4.93	□□□□□ -1.62
RPN7	YPR108W	DCN1	Q12395	269 aa		4.93	□□□□□ -1.62
RPN7	YPR108W	TMA17	Q12513	150 aa		4.93	□□□□□ -1.62
RPN7	YPR108W	YOS1	Q3E834	85 aa		4.93	□□□□□ -1.62
RPN7	YPR108W	Q0142	Q9ZZW4	58 aa		4.93	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 51.3 ms