RNA–Protein interactions for RNA: YDR080W

VPS41, Transcript of Subunit of the HOPS endocytic tethering complex, yeastyeast

Gene VPS41, Length 2,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS41YDR080W NDE2Q07500 545 aa1.85□□□□□ -2.11
VPS41YDR080W AIM20P40451 204 aa1.85□□□□□ -2.11
VPS41YDR080W YRB2P40517 327 aa1.85□□□□□ -2.11
VPS41YDR080W FYV6P53913 173 aa1.85□□□□□ -2.11
VPS41YDR080W ATG39Q06159 398 aa1.85□□□□□ -2.11
VPS41YDR080W MCH1Q07376 486 aa1.85□□□□□ -2.11
VPS41YDR080W PDS1P40316 373 aaPredicted RBP1.84□□□□□ -2.11
VPS41YDR080W FSH2Q05015 223 aa1.84□□□□□ -2.11
VPS41YDR080W YLR283WQ05867 314 aa1.84□□□□□ -2.11
VPS41YDR080W YPL119C-AQ3E751 87 aa1.84□□□□□ -2.11
VPS41YDR080W YKL068W-AQ3E826 78 aa1.84□□□□□ -2.11
VPS41YDR080W ECM25P32525 599 aa1.84□□□□□ -2.12
VPS41YDR080W DOA4P32571 926 aa1.84□□□□□ -2.12
VPS41YDR080W UPS2P35200 230 aa1.84□□□□□ -2.12
VPS41YDR080W ECM4P36156 370 aa1.84□□□□□ -2.12
VPS41YDR080W SHE1P38200 338 aa1.84□□□□□ -2.12
VPS41YDR080W FCY21P40039 528 aa1.84□□□□□ -2.12
VPS41YDR080W WWM1P43582 211 aaKnown RBP1.84□□□□□ -2.12
VPS41YDR080W TMA22P47089 198 aaPredicted RBP1.84□□□□□ -2.12
VPS41YDR080W TDA4P47153 279 aa1.84□□□□□ -2.12
VPS41YDR080W YMD8Q03697 442 aa1.84□□□□□ -2.12
VPS41YDR080W SMP3Q04174 516 aa1.84□□□□□ -2.12
VPS41YDR080W YOR292CQ08743 309 aa1.84□□□□□ -2.12
VPS41YDR080W RPL9AP05738 191 aaKnown RBP1.83□□□□□ -2.12
VPS41YDR080W FAR1P21268 830 aa1.83□□□□□ -2.12
VPS41YDR080W IDP1P21954 428 aaKnown RBP1.83□□□□□ -2.12
VPS41YDR080W YKL063CP35725 167 aa1.83□□□□□ -2.12
VPS41YDR080W MRPL38P35996 138 aaPredicted RBP1.83□□□□□ -2.12
VPS41YDR080W SLM4P38247 162 aa1.83□□□□□ -2.12
VPS41YDR080W GEP4P38812 185 aa1.83□□□□□ -2.12
VPS41YDR080W AIM10P39965 576 aaKnown RBP1.83□□□□□ -2.12
VPS41YDR080W YGR042WP53227 271 aa1.83□□□□□ -2.12
VPS41YDR080W ALG9P53868 555 aaKnown RBP1.83□□□□□ -2.12
VPS41YDR080W YMR226CQ05016 267 aaKnown RBP1.83□□□□□ -2.12
VPS41YDR080W CYC3P06182 269 aa1.83□□□□□ -2.12
VPS41YDR080W FUS3P16892 353 aaKnown RBP1.83□□□□□ -2.12
VPS41YDR080W DPH5P32469 300 aaPredicted RBP1.83□□□□□ -2.12
VPS41YDR080W PAU2P32612 120 aa1.83□□□□□ -2.12
VPS41YDR080W YMR130WQ04223 302 aa1.83□□□□□ -2.12
VPS41YDR080W SPC24Q04477 213 aa1.83□□□□□ -2.12
VPS41YDR080W HRD1Q08109 551 aa1.83□□□□□ -2.12
VPS41YDR080W BOL1Q3E793 110 aa1.83□□□□□ -2.12
VPS41YDR080W GCN4P03069 281 aa1.83□□□□□ -2.12
VPS41YDR080W PRE7P23724 241 aaKnown RBP1.83□□□□□ -2.12
VPS41YDR080W UMP1P38293 148 aa1.83□□□□□ -2.12
VPS41YDR080W SMB1P40018 196 aaKnown RBP1.83□□□□□ -2.12
VPS41YDR080W CAB5Q03941 241 aa1.83□□□□□ -2.12
VPS41YDR080W RDS3Q06835 107 aaPredicted RBP1.83□□□□□ -2.12
VPS41YDR080W PBP4Q07362 185 aaKnown RBP1.83□□□□□ -2.12
VPS41YDR080W YDL012CQ12489 107 aa1.83□□□□□ -2.12
VPS41YDR080W YLR365WQ7LIF2 110 aa1.83□□□□□ -2.12
VPS41YDR080W ARO2P28777 376 aaKnown RBP1.82□□□□□ -2.12
VPS41YDR080W NRG2P38082 220 aa1.82□□□□□ -2.12
VPS41YDR080W ERV29P53337 310 aa1.82□□□□□ -2.12
VPS41YDR080W YPL199CQ08954 240 aa1.82□□□□□ -2.12
VPS41YDR080W TAR1Q8TGM6 124 aa1.82□□□□□ -2.12
VPS41YDR080W PET494P07390 489 aaPredicted RBP1.82□□□□□ -2.12
VPS41YDR080W CMC1P36064 111 aa1.82□□□□□ -2.12
VPS41YDR080W YKR045CP36138 183 aa1.82□□□□□ -2.12
VPS41YDR080W SSU72P53538 206 aaPredicted RBP1.82□□□□□ -2.12
VPS41YDR080W VBA1Q04301 562 aa1.82□□□□□ -2.12
VPS41YDR080W RRG8Q06109 277 aa1.82□□□□□ -2.12
VPS41YDR080W VPS63O13549 108 aa1.81□□□□□ -2.12
VPS41YDR080W HHF1P02309 103 aaKnown RBP1.81□□□□□ -2.12
VPS41YDR080W MDH1P17505 334 aaKnown RBP RIP-Chip data1.81□□□□□ -2.12not detected
VPS41YDR080W TIP1P27654 210 aaPredicted RBP1.81□□□□□ -2.12
VPS41YDR080W POP5P28005 173 aa1.81□□□□□ -2.12
VPS41YDR080W RPB7P34087 171 aa1.81□□□□□ -2.12
VPS41YDR080W SFK1P35735 353 aa1.81□□□□□ -2.12
VPS41YDR080W QDR3P38227 689 aa1.81□□□□□ -2.12
VPS41YDR080W ARO8P53090 500 aaKnown RBP1.81□□□□□ -2.12
VPS41YDR080W HNT1Q04344 158 aaKnown RBP1.81□□□□□ -2.12
VPS41YDR080W MEU1Q07938 337 aaKnown RBP RIP-Chip data1.81□□□□□ -2.12not detected
VPS41YDR080W YPL162CQ12042 273 aa1.81□□□□□ -2.12
VPS41YDR080W HTB1P02293 131 aaKnown RBP1.81□□□□□ -2.12
VPS41YDR080W BUD23P25627 275 aaPredicted RBP1.81□□□□□ -2.12
VPS41YDR080W AHC2P25649 128 aa1.81□□□□□ -2.12
VPS41YDR080W ERG3P32353 365 aa1.81□□□□□ -2.12
VPS41YDR080W SYS1P41544 203 aa1.81□□□□□ -2.12
VPS41YDR080W YFL067WP43537 175 aa1.81□□□□□ -2.12
VPS41YDR080W YGR149WP48236 432 aa1.81□□□□□ -2.12
VPS41YDR080W SGF11Q03067 99 aa1.81□□□□□ -2.12
VPS41YDR080W SNZ1Q03148 297 aa1.81□□□□□ -2.12
VPS41YDR080W ATG17Q06410 417 aa1.81□□□□□ -2.12
VPS41YDR080W VAM10Q08474 114 aa1.81□□□□□ -2.12
VPS41YDR080W ISN1Q99312 450 aa1.81□□□□□ -2.12
VPS41YDR080W CUP2P15315 225 aa1.8□□□□□ -2.12
VPS41YDR080W PAU24P38155 120 aa1.8□□□□□ -2.12
VPS41YDR080W DOG2P38773 246 aa1.8□□□□□ -2.12
VPS41YDR080W DOG1P38774 246 aa1.8□□□□□ -2.12
VPS41YDR080W YHR138CP38841 114 aaPredicted RBP1.8□□□□□ -2.12
VPS41YDR080W YER137CP40083 148 aaKnown RBP1.8□□□□□ -2.12
VPS41YDR080W YNL200CP40165 246 aaKnown RBP1.8□□□□□ -2.12
VPS41YDR080W YPR1Q12458 312 aa1.8□□□□□ -2.12
VPS41YDR080W YPR108W-AQ3E7B3 70 aa1.8□□□□□ -2.12
VPS41YDR080W YPL229WQ99395 206 aa1.8□□□□□ -2.12
VPS41YDR080W PET18P25362 215 aa1.8□□□□□ -2.12
VPS41YDR080W UBC8P28263 218 aa1.8□□□□□ -2.12
VPS41YDR080W YPS1P32329 569 aa1.8□□□□□ -2.12
VPS41YDR080W SAS2P40963 338 aa1.8□□□□□ -2.12
Retrieved 100 of 5,963 RNA–protein pairs in 80.2 ms