RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeastyeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ROT1YMR200W YBR063CP38083 404 aa3.84□□□□□ -1.79
ROT1YMR200W FMP23P38231 175 aa3.84□□□□□ -1.79
ROT1YMR200W GGC1P38988 300 aa3.84□□□□□ -1.79
ROT1YMR200W UFD1P53044 361 aa3.84□□□□□ -1.79
ROT1YMR200W YPL039WQ03080 316 aa3.84□□□□□ -1.79
ROT1YMR200W LPP1Q04396 274 aa3.84□□□□□ -1.79
ROT1YMR200W GRH1Q04410 372 aaKnown RBP3.84□□□□□ -1.79
ROT1YMR200W SCW10Q04951 389 aa3.84□□□□□ -1.79
ROT1YMR200W PRP11Q07350 266 aaPredicted RBP3.84□□□□□ -1.79
ROT1YMR200W SLD7Q08457 257 aa3.84□□□□□ -1.79
ROT1YMR200W YPR170W-BP0C5R9 85 aa3.83□□□□□ -1.8
ROT1YMR200W PET9P18239 318 aaKnown RBP3.83□□□□□ -1.8
ROT1YMR200W STP22P25604 385 aa3.83□□□□□ -1.8
ROT1YMR200W TFC1P32367 649 aa3.83□□□□□ -1.8
ROT1YMR200W CSH1P38287 376 aa3.83□□□□□ -1.8
ROT1YMR200W OM14P38325 134 aa3.83□□□□□ -1.8
ROT1YMR200W PTH1P38876 190 aaKnown RBP3.83□□□□□ -1.8
ROT1YMR200W BAT1P38891 393 aaKnown RBP3.83□□□□□ -1.8
ROT1YMR200W IRC22P40006 225 aa3.83□□□□□ -1.8
ROT1YMR200W ORM1P53224 222 aa3.83□□□□□ -1.8
ROT1YMR200W COF1Q03048 143 aaKnown RBP3.83□□□□□ -1.8
ROT1YMR200W THI74Q04083 370 aa3.83□□□□□ -1.8
ROT1YMR200W MRX8Q05473 314 aa3.83□□□□□ -1.8
ROT1YMR200W NIP7Q08962 181 aaKnown RBP3.83□□□□□ -1.8
ROT1YMR200W YPL264CQ08980 353 aa3.83□□□□□ -1.8
ROT1YMR200W YOR342CQ12182 319 aa3.83□□□□□ -1.8
ROT1YMR200W ATP14Q12349 124 aa3.83□□□□□ -1.8
ROT1YMR200W YIR021W-AQ3E739 70 aa3.83□□□□□ -1.8
ROT1YMR200W YOR020W-AQ3E824 90 aa3.83□□□□□ -1.8
ROT1YMR200W YFR032C-BQ8TGU2 87 aa3.83□□□□□ -1.8
ROT1YMR200W PEP1P32319 1579 aa3.82□□□□□ -1.8
ROT1YMR200W YOR304C-AO14468 76 aa3.82□□□□□ -1.8
ROT1YMR200W RPL30P14120 105 aaKnown RBP3.82□□□□□ -1.8
ROT1YMR200W GSP1P32835 219 aaKnown RBP3.82□□□□□ -1.8
ROT1YMR200W GSP2P32836 220 aaKnown RBP3.82□□□□□ -1.8
ROT1YMR200W MSA2P36157 363 aa3.82□□□□□ -1.8
ROT1YMR200W MRPL24P36525 258 aaPredicted RBP3.82□□□□□ -1.8
ROT1YMR200W RFC2P40348 353 aa3.82□□□□□ -1.8
ROT1YMR200W ERJ5P43613 295 aaPredicted RBP3.82□□□□□ -1.8
ROT1YMR200W OST2P46964 130 aa3.82□□□□□ -1.8
ROT1YMR200W TIM13P53299 105 aa3.82□□□□□ -1.8
ROT1YMR200W BOR1P53838 576 aa3.82□□□□□ -1.8
ROT1YMR200W API2Q04413 109 aa3.82□□□□□ -1.8
ROT1YMR200W IRC25Q07951 179 aa3.82□□□□□ -1.8
ROT1YMR200W GEP5Q12393 293 aa3.82□□□□□ -1.8
ROT1YMR200W YCL021W-AQ96VH3 125 aa3.82□□□□□ -1.8
ROT1YMR200W REV3P14284 1504 aa3.81□□□□□ -1.8
ROT1YMR200W YLR462WO13556 202 aa3.81□□□□□ -1.8
ROT1YMR200W Q0255P03881 472 aa3.81□□□□□ -1.8
ROT1YMR200W LDB16P25587 256 aa3.81□□□□□ -1.8
ROT1YMR200W ZRT3P34240 503 aa3.81□□□□□ -1.8
ROT1YMR200W UTP30P36144 274 aaKnown RBP3.81□□□□□ -1.8
ROT1YMR200W OPY1P38271 328 aa3.81□□□□□ -1.8
ROT1YMR200W RPS20P38701 121 aaKnown RBP3.81□□□□□ -1.8
ROT1YMR200W YEL075CP39972 122 aa3.81□□□□□ -1.8
ROT1YMR200W YPL073CP40323 161 aa3.81□□□□□ -1.8
ROT1YMR200W YGL118CP53132 145 aa3.81□□□□□ -1.8
ROT1YMR200W HHO1P53551 258 aa3.81□□□□□ -1.8
ROT1YMR200W PBA1Q05778 276 aa3.81□□□□□ -1.8
ROT1YMR200W DAS2Q12084 232 aa3.81□□□□□ -1.8
ROT1YMR200W YDL180WQ12301 547 aa3.81□□□□□ -1.8
ROT1YMR200W ATG5Q12380 294 aa3.81□□□□□ -1.8
ROT1YMR200W RPS1BP23248 255 aaKnown RBP3.8□□□□□ -1.8
ROT1YMR200W SEC17P32602 292 aa3.8□□□□□ -1.8
ROT1YMR200W SFC1P33303 322 aa3.8□□□□□ -1.8
ROT1YMR200W YBL081WP38180 368 aaKnown RBP3.8□□□□□ -1.8
ROT1YMR200W POP4P38336 279 aa3.8□□□□□ -1.8
ROT1YMR200W RPF1P38805 295 aaKnown RBP3.8□□□□□ -1.8
ROT1YMR200W VMA7P39111 118 aa3.8□□□□□ -1.8
ROT1YMR200W TIF34P40217 347 aaKnown RBP3.8□□□□□ -1.8
ROT1YMR200W DLS1P40366 167 aa3.8□□□□□ -1.8
ROT1YMR200W YGL088WP53151 121 aa3.8□□□□□ -1.8
ROT1YMR200W RUB1Q03919 77 aa3.8□□□□□ -1.8
ROT1YMR200W CNL1Q06333 122 aa3.8□□□□□ -1.8
ROT1YMR200W LDB18Q07887 179 aa3.8□□□□□ -1.8
ROT1YMR200W PST1Q12355 444 aa3.8□□□□□ -1.8
ROT1YMR200W YER078W-AQ3E7A2 54 aa3.8□□□□□ -1.8
ROT1YMR200W CCH1P50077 2039 aa3.8□□□□□ -1.8
ROT1YMR200W YCR101CP25607 182 aa3.79□□□□□ -1.8
ROT1YMR200W UGX2P32772 223 aa3.79□□□□□ -1.8
ROT1YMR200W SHE2P36068 246 aaKnown RBP RIP-Chip data3.79□□□□□ -1.8not detected
ROT1YMR200W SKG1P36169 355 aa3.79□□□□□ -1.8
ROT1YMR200W TEM1P38987 245 aa3.79□□□□□ -1.8
ROT1YMR200W AIM2P39721 246 aa3.79□□□□□ -1.8
ROT1YMR200W AVT2P39981 480 aa3.79□□□□□ -1.8
ROT1YMR200W RGI1P40043 161 aaPredicted RBP3.79□□□□□ -1.8
ROT1YMR200W SYS1P41544 203 aa3.79□□□□□ -1.8
ROT1YMR200W YFR054CP43622 192 aa3.79□□□□□ -1.8
ROT1YMR200W RPA43P46669 326 aa3.79□□□□□ -1.8
ROT1YMR200W PGU1P47180 361 aa3.79□□□□□ -1.8
ROT1YMR200W CAB4P53332 305 aa3.79□□□□□ -1.8
ROT1YMR200W ALG9P53868 555 aaKnown RBP3.79□□□□□ -1.8
ROT1YMR200W NKP2Q06162 153 aa3.79□□□□□ -1.8
ROT1YMR200W YOL029CQ08187 201 aa3.79□□□□□ -1.8
ROT1YMR200W YBL112CQ3E7Y4 105 aa3.79□□□□□ -1.8
ROT1YMR200W ATG2P53855 1592 aa3.79□□□□□ -1.8
ROT1YMR200W NUP157P40064 1391 aaKnown RBP3.78□□□□□ -1.8
ROT1YMR200W RSA4P25382 515 aaKnown RBP3.78□□□□□ -1.8
ROT1YMR200W RPC19P28000 142 aaKnown RBP3.78□□□□□ -1.8
ROT1YMR200W MRP49P32388 137 aa3.78□□□□□ -1.8
Retrieved 100 of 5,963 RNA–protein pairs in 66.7 ms