RNA–Protein interactions for RNA: YJR055W

HIT1, Transcript of Protein involved in C/D snoRNP assembly, yeast

Gene HIT1, Length 495 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HIT1	YJR055W	YNR062C	P53748	327 aa		0.88	□□□□□ -2.27
HIT1	YJR055W	ABF2	Q02486	183 aa		0.88	□□□□□ -2.27
HIT1	YJR055W	MRPS8	Q03799	155 aa		0.88	□□□□□ -2.27
HIT1	YJR055W	DCR2	Q05924	578 aa		0.88	□□□□□ -2.27
HIT1	YJR055W	SEI1	Q06058	285 aa		0.88	□□□□□ -2.27
HIT1	YJR055W	ATG31	Q12421	196 aa		0.88	□□□□□ -2.27
HIT1	YJR055W	CDC10	P25342	322 aa	Known RBP	0.87	□□□□□ -2.27
HIT1	YJR055W	PPA2	P28239	310 aa		0.87	□□□□□ -2.27
HIT1	YJR055W	OAC1	P32332	324 aa		0.87	□□□□□ -2.27
HIT1	YJR055W	MDH3	P32419	343 aa	Known RBP RIP-Chip data	0.87	□□□□□ -2.27	not detected
HIT1	YJR055W	SKG1	P36169	355 aa		0.87	□□□□□ -2.27
HIT1	YJR055W	YHR022C	P38763	256 aa		0.87	□□□□□ -2.27
HIT1	YJR055W	HMF1	P40037	129 aa	Known RBP	0.87	□□□□□ -2.27
HIT1	YJR055W	COX15	P40086	486 aa		0.87	□□□□□ -2.27
HIT1	YJR055W	TRM9	P49957	279 aa		0.87	□□□□□ -2.27
HIT1	YJR055W	FYV6	P53913	173 aa		0.87	□□□□□ -2.27
HIT1	YJR055W	YNL046W	P53956	172 aa		0.87	□□□□□ -2.27
HIT1	YJR055W	CYT2	Q00873	224 aa		0.87	□□□□□ -2.27
HIT1	YJR055W	SNZ1	Q03148	297 aa		0.87	□□□□□ -2.27
HIT1	YJR055W	STT4	P37297	1900 aa		0.86	□□□□□ -2.27
HIT1	YJR055W	RPL28	P02406	149 aa	Known RBP	0.86	□□□□□ -2.27
HIT1	YJR055W	MRPS28	P21771	286 aa		0.86	□□□□□ -2.27
HIT1	YJR055W	MDH2	P22133	377 aa		0.86	□□□□□ -2.27
HIT1	YJR055W	RPL24B	P24000	155 aa	Known RBP	0.86	□□□□□ -2.27
HIT1	YJR055W	YPT52	P36018	234 aa	Known RBP	0.86	□□□□□ -2.27
HIT1	YJR055W	RPF1	P38805	295 aa	Known RBP	0.86	□□□□□ -2.27
HIT1	YJR055W	DSE2	P38844	325 aa		0.86	□□□□□ -2.27
HIT1	YJR055W	FCY21	P40039	528 aa		0.86	□□□□□ -2.27
HIT1	YJR055W	PRE6	P40303	254 aa	Known RBP	0.86	□□□□□ -2.27
HIT1	YJR055W	AYR1	P40471	297 aa		0.86	□□□□□ -2.27
HIT1	YJR055W	YKE4	P40544	346 aa		0.86	□□□□□ -2.27
HIT1	YJR055W	HOC1	P47124	396 aa		0.86	□□□□□ -2.27
HIT1	YJR055W	DAD3	P69850	94 aa		0.86	□□□□□ -2.27
HIT1	YJR055W	NEJ1	Q06148	342 aa		0.86	□□□□□ -2.27
HIT1	YJR055W	MSA1	Q08471	629 aa		0.86	□□□□□ -2.27
HIT1	YJR055W	NIP7	Q08962	181 aa	Known RBP	0.86	□□□□□ -2.27
HIT1	YJR055W	CDC8	P00572	216 aa		0.85	□□□□□ -2.27
HIT1	YJR055W	YOL162W	P0CF19	215 aa		0.85	□□□□□ -2.27
HIT1	YJR055W	SCL1	P21243	252 aa	Known RBP	0.85	□□□□□ -2.27
HIT1	YJR055W	ATG22	P25568	528 aa		0.85	□□□□□ -2.27
HIT1	YJR055W	RPT5	P33297	434 aa	Known RBP	0.85	□□□□□ -2.27
HIT1	YJR055W	DOG2	P38773	246 aa		0.85	□□□□□ -2.27
HIT1	YJR055W	DOG1	P38774	246 aa		0.85	□□□□□ -2.27
HIT1	YJR055W	BMT5	P40493	336 aa		0.85	□□□□□ -2.27
HIT1	YJR055W	SRL4	Q03085	281 aa		0.85	□□□□□ -2.27
HIT1	YJR055W	LSO2	Q3E772	92 aa	Known RBP	0.85	□□□□□ -2.27
HIT1	YJR055W	THP2	O13539	261 aa	Known RBP	0.84	□□□□□ -2.27
HIT1	YJR055W	MATALPHA1	P0CY06	175 aa		0.84	□□□□□ -2.27
HIT1	YJR055W	HMLALPHA1	P0CY07	175 aa		0.84	□□□□□ -2.27
HIT1	YJR055W	URA6	P15700	204 aa		0.84	□□□□□ -2.27
HIT1	YJR055W	ERD2	P18414	219 aa		0.84	□□□□□ -2.27
HIT1	YJR055W	EHD3	P28817	500 aa		0.84	□□□□□ -2.27
HIT1	YJR055W	VMA6	P32366	345 aa	Known RBP	0.84	□□□□□ -2.27
HIT1	YJR055W	VPS21	P36017	210 aa	Known RBP	0.84	□□□□□ -2.27
HIT1	YJR055W	MRPL28	P36527	147 aa		0.84	□□□□□ -2.27
HIT1	YJR055W	MIC12	P38341	106 aa		0.84	□□□□□ -2.27
HIT1	YJR055W	YER085C	P40058	173 aa		0.84	□□□□□ -2.27
HIT1	YJR055W	AGE2	P40529	298 aa		0.84	□□□□□ -2.27
HIT1	YJR055W	YJR056C	P47115	236 aa		0.84	□□□□□ -2.27
HIT1	YJR055W	MCM22	P47167	239 aa		0.84	□□□□□ -2.27
HIT1	YJR055W	BUD25	P85052	153 aa		0.84	□□□□□ -2.27
HIT1	YJR055W	CDC123	Q05791	360 aa		0.84	□□□□□ -2.27
HIT1	YJR055W	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	0.84	□□□□□ -2.27	not detected
HIT1	YJR055W	DCN1	Q12395	269 aa		0.84	□□□□□ -2.27
HIT1	YJR055W	FLO9	P39712	1322 aa		0.84	□□□□□ -2.28
HIT1	YJR055W	PET9	P18239	318 aa	Known RBP	0.83	□□□□□ -2.28
HIT1	YJR055W	YMR31	P19955	123 aa		0.83	□□□□□ -2.28
HIT1	YJR055W	RPS5	P26783	225 aa	Known RBP	0.83	□□□□□ -2.28
HIT1	YJR055W	BMH2	P34730	273 aa	Known RBP	0.83	□□□□□ -2.28
HIT1	YJR055W	YKR045C	P36138	183 aa		0.83	□□□□□ -2.28
HIT1	YJR055W	ECM33	P38248	429 aa	Known RBP	0.83	□□□□□ -2.28
HIT1	YJR055W	YBR219C	P38317	127 aa		0.83	□□□□□ -2.28
HIT1	YJR055W	AST2	P39945	430 aa	Known RBP	0.83	□□□□□ -2.28
HIT1	YJR055W	RMD6	P39975	231 aa		0.83	□□□□□ -2.28
HIT1	YJR055W	PGD1	P40356	397 aa		0.83	□□□□□ -2.28
HIT1	YJR055W	PHB1	P40961	287 aa		0.83	□□□□□ -2.28
HIT1	YJR055W	RPL33B	P41056	107 aa	Known RBP	0.83	□□□□□ -2.28
HIT1	YJR055W	SAY1	P53324	424 aa		0.83	□□□□□ -2.28
HIT1	YJR055W	YLR283W	Q05867	314 aa		0.83	□□□□□ -2.28
HIT1	YJR055W	USB1	Q12208	290 aa	Known RBP	0.83	□□□□□ -2.28
HIT1	YJR055W	CDC39	P25655	2108 aa	Known RBP	0.83	□□□□□ -2.28
HIT1	YJR055W	RAD50	P12753	1312 aa		0.83	□□□□□ -2.28
HIT1	YJR055W	CDC28	P00546	298 aa	Known RBP	0.82	□□□□□ -2.28
HIT1	YJR055W	RAS2	P01120	322 aa	Known RBP	0.82	□□□□□ -2.28
HIT1	YJR055W	BCY1	P07278	416 aa	Known RBP	0.82	□□□□□ -2.28
HIT1	YJR055W	NHP6B	P11633	99 aa	Known RBP	0.82	□□□□□ -2.28
HIT1	YJR055W	STE18	P18852	110 aa		0.82	□□□□□ -2.28
HIT1	YJR055W	COQ1	P18900	473 aa		0.82	□□□□□ -2.28
HIT1	YJR055W	TAF14	P35189	244 aa		0.82	□□□□□ -2.28
HIT1	YJR055W	YKL075C	P36083	450 aa		0.82	□□□□□ -2.28
HIT1	YJR055W	YNL217W	P40152	326 aa		0.82	□□□□□ -2.28
HIT1	YJR055W	TIR3	P40552	269 aa		0.82	□□□□□ -2.28
HIT1	YJR055W	SMD3	P43321	101 aa	Known RBP	0.82	□□□□□ -2.28
HIT1	YJR055W	BXI1	P48558	297 aa		0.82	□□□□□ -2.28
HIT1	YJR055W	AIF1	P52923	378 aa		0.82	□□□□□ -2.28
HIT1	YJR055W	ALG13	P53178	202 aa		0.82	□□□□□ -2.28
HIT1	YJR055W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	0.82	□□□□□ -2.28	not detected
HIT1	YJR055W	YDR248C	Q03786	193 aa		0.82	□□□□□ -2.28
HIT1	YJR055W	LPP1	Q04396	274 aa		0.82	□□□□□ -2.28
HIT1	YJR055W	ARR2	Q06597	130 aa		0.82	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 28.3 ms