RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W MGT1P26188 188 aa0.86□□□□□ -2.27
CDC39YCR093W YHR125WP38831 101 aa0.86□□□□□ -2.27
CDC39YCR093W SOK1P40317 901 aa0.86□□□□□ -2.27
CDC39YCR093W RAD17P48581 401 aa0.86□□□□□ -2.27
CDC39YCR093W CLP1Q08685 445 aaPredicted RBP0.86□□□□□ -2.27
CDC39YCR093W YPL162CQ12042 273 aa0.86□□□□□ -2.27
CDC39YCR093W CPA1P07258 411 aaKnown RBP0.86□□□□□ -2.27
CDC39YCR093W YBR285WP38354 144 aa0.86□□□□□ -2.27
CDC39YCR093W NUP49Q02199 472 aa0.86□□□□□ -2.27
CDC39YCR093W TSA2Q04120 196 aa0.86□□□□□ -2.27
CDC39YCR093W YPR174CQ06616 221 aaPredicted RBP0.86□□□□□ -2.27
CDC39YCR093W YOR342CQ12182 319 aa0.86□□□□□ -2.27
CDC39YCR093W LYS2P07702 1392 aa0.86□□□□□ -2.27
CDC39YCR093W SCO1P23833 295 aa0.85□□□□□ -2.27
CDC39YCR093W PEX4P29340 183 aa0.85□□□□□ -2.27
CDC39YCR093W GPX1P36014 167 aa0.85□□□□□ -2.27
CDC39YCR093W PGD1P40356 397 aa0.85□□□□□ -2.27
CDC39YCR093W GON7P46984 123 aa0.85□□□□□ -2.27
CDC39YCR093W YNL247WP53852 767 aaKnown RBP0.85□□□□□ -2.27
CDC39YCR093W RGM1Q00453 211 aa0.85□□□□□ -2.27
CDC39YCR093W TRR1P29509 319 aaKnown RBP0.85□□□□□ -2.27
CDC39YCR093W YGL185CP53100 379 aa0.85□□□□□ -2.27
CDC39YCR093W LSM7P53905 115 aaKnown RBP0.85□□□□□ -2.27
CDC39YCR093W YDR391CQ04170 232 aa0.85□□□□□ -2.27
CDC39YCR093W YOL019WQ08157 551 aa0.85□□□□□ -2.27
CDC39YCR093W YOR186WQ08560 144 aa0.85□□□□□ -2.27
CDC39YCR093W FKS1P38631 1876 aaKnown RBP0.85□□□□□ -2.27
CDC39YCR093W IRA2P19158 3079 aa0.85□□□□□ -2.27
CDC39YCR093W RHO1P06780 209 aaKnown RBP0.85□□□□□ -2.27
CDC39YCR093W CMD1P06787 147 aaKnown RBP0.85□□□□□ -2.27
CDC39YCR093W YPR170W-BP0C5R9 85 aa0.85□□□□□ -2.27
CDC39YCR093W MDH2P22133 377 aa0.85□□□□□ -2.27
CDC39YCR093W MIG1P27705 504 aa0.85□□□□□ -2.27
CDC39YCR093W TVP38P36164 337 aa0.85□□□□□ -2.27
CDC39YCR093W HHT1P61830 136 aa0.85□□□□□ -2.27
CDC39YCR093W SDC1Q03323 175 aa0.85□□□□□ -2.27
CDC39YCR093W YPD1Q07688 167 aa0.85□□□□□ -2.27
CDC39YCR093W TSC3Q3E790 80 aa0.85□□□□□ -2.27
CDC39YCR093W IRA1P18963 3092 aa0.85□□□□□ -2.27
CDC39YCR093W DBF2P22204 572 aa0.85□□□□□ -2.27
CDC39YCR093W PET8P38921 284 aa0.85□□□□□ -2.27
CDC39YCR093W PRM10P42946 383 aa0.85□□□□□ -2.27
CDC39YCR093W DYN3Q04949 312 aa0.85□□□□□ -2.27
CDC39YCR093W SEI1Q06058 285 aa0.85□□□□□ -2.27
CDC39YCR093W ATG39Q06159 398 aa0.85□□□□□ -2.27
CDC39YCR093W MIM1Q08176 113 aa0.85□□□□□ -2.27
CDC39YCR093W IKI3Q06706 1349 aaKnown RBP0.85□□□□□ -2.27
CDC39YCR093W SCM4P32564 187 aa0.85□□□□□ -2.27
CDC39YCR093W SPO73P40031 143 aa0.85□□□□□ -2.27
CDC39YCR093W RPL33BP41056 107 aaKnown RBP0.85□□□□□ -2.27
CDC39YCR093W YLR179CQ06252 201 aaKnown RBP0.85□□□□□ -2.27
CDC39YCR093W SWI1P09547 1314 aa0.85□□□□□ -2.27
CDC39YCR093W ERD2P18414 219 aa0.84□□□□□ -2.27
CDC39YCR093W SLX1P38324 304 aa0.84□□□□□ -2.27
CDC39YCR093W ERG28P40030 148 aa0.84□□□□□ -2.27
CDC39YCR093W YLR419WQ06698 1435 aaKnown RBP0.84□□□□□ -2.27
CDC39YCR093W RAD9P14737 1309 aa0.84□□□□□ -2.27
CDC39YCR093W QCR2P07257 368 aa0.84□□□□□ -2.27
CDC39YCR093W MATALPHA2P0CY08 210 aa0.84□□□□□ -2.27
CDC39YCR093W HMLALPHA2P0CY09 210 aa0.84□□□□□ -2.27
CDC39YCR093W CBF1P17106 351 aa0.84□□□□□ -2.27
CDC39YCR093W UMP1P38293 148 aa0.84□□□□□ -2.27
CDC39YCR093W ADO1P47143 340 aaKnown RBP0.84□□□□□ -2.27
CDC39YCR093W TRM9P49957 279 aa0.84□□□□□ -2.27
CDC39YCR093W ATP19P81451 68 aa0.84□□□□□ -2.27
CDC39YCR093W SWP1Q02795 286 aa0.84□□□□□ -2.27
CDC39YCR093W YPR172WQ06608 200 aa0.84□□□□□ -2.27
CDC39YCR093W YOL024WQ08172 172 aa0.84□□□□□ -2.27
CDC39YCR093W TRA1P38811 3744 aa0.84□□□□□ -2.27
CDC39YCR093W SIR4P11978 1358 aa0.84□□□□□ -2.27
CDC39YCR093W MER1P16523 270 aa0.84□□□□□ -2.27
CDC39YCR093W PPH21P23594 369 aa0.84□□□□□ -2.27
CDC39YCR093W TRX3P25372 127 aa0.84□□□□□ -2.27
CDC39YCR093W DSE2P38844 325 aa0.84□□□□□ -2.27
CDC39YCR093W COS1P53822 381 aa0.84□□□□□ -2.27
CDC39YCR093W MEU1Q07938 337 aaKnown RBP RIP-Chip data0.84□□□□□ -2.27not detected
CDC39YCR093W ATO3Q12359 275 aa0.84□□□□□ -2.27
CDC39YCR093W AGC1Q12482 902 aa0.84□□□□□ -2.27
CDC39YCR093W PRP8P33334 2413 aaKnown RBP0.84□□□□□ -2.27
CDC39YCR093W SAL1D6W196 494 aa0.84□□□□□ -2.28
CDC39YCR093W YCR102CP25608 368 aa0.84□□□□□ -2.28
CDC39YCR093W YGR018CP53211 109 aa0.84□□□□□ -2.28
CDC39YCR093W YNL010WP53981 241 aaKnown RBP0.84□□□□□ -2.28
CDC39YCR093W VPS28Q02767 242 aa0.84□□□□□ -2.28
CDC39YCR093W FLO1P32768 1537 aa0.84□□□□□ -2.28
CDC39YCR093W SOD1P00445 154 aaKnown RBP0.84□□□□□ -2.28
CDC39YCR093W Q0255P03881 472 aa0.84□□□□□ -2.28
CDC39YCR093W YOL162WP0CF19 215 aa0.84□□□□□ -2.28
CDC39YCR093W COX10P21592 462 aa0.84□□□□□ -2.28
CDC39YCR093W LSM4P40070 187 aaKnown RBP0.84□□□□□ -2.28
CDC39YCR093W CAT5P41735 233 aa0.84□□□□□ -2.28
CDC39YCR093W AIF1P52923 378 aa0.84□□□□□ -2.28
CDC39YCR093W MMS2P53152 137 aa0.84□□□□□ -2.28
CDC39YCR093W HPT1Q04178 221 aaKnown RBP0.84□□□□□ -2.28
CDC39YCR093W SHH3Q04487 196 aa0.84□□□□□ -2.28
CDC39YCR093W IGO2Q9P305 131 aa0.84□□□□□ -2.28
CDC39YCR093W MDM35O60200 86 aa0.83□□□□□ -2.28
CDC39YCR093W TCP1P12612 559 aaKnown RBP0.83□□□□□ -2.28
CDC39YCR093W KRE1P17260 313 aa0.83□□□□□ -2.28
CDC39YCR093W MDH3P32419 343 aaKnown RBP RIP-Chip data0.83□□□□□ -2.28not detected
Retrieved 100 of 5,963 RNA–protein pairs in 7.4 ms