RNA–Protein interactions for RNA: YOR157C

PUP1, Transcript of Beta 2 subunit of the 20S proteasome, yeastyeast

Gene PUP1, Length 786 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PUP1YOR157C SAS4Q04003 481 aa11.48□□□□□ -0.57
PUP1YOR157C HVG1P0CE11 249 aa11.47□□□□□ -0.57
PUP1YOR157C YGR117CP53270 476 aa11.47□□□□□ -0.57
PUP1YOR157C AOS1Q06624 347 aa11.47□□□□□ -0.57
PUP1YOR157C DCD1P06773 312 aa11.46□□□□□ -0.57
PUP1YOR157C KCC4P25389 1037 aa11.46□□□□□ -0.57
PUP1YOR157C AKL1P38080 1108 aaKnown RBP11.46□□□□□ -0.57
PUP1YOR157C HKR1P41809 1802 aa11.46□□□□□ -0.58
PUP1YOR157C HPR1P17629 752 aaKnown RBP11.44□□□□□ -0.58
PUP1YOR157C STV1P37296 890 aa11.44□□□□□ -0.58
PUP1YOR157C ARG8P18544 423 aa11.43□□□□□ -0.58
PUP1YOR157C MAL31P38156 614 aa11.43□□□□□ -0.58
PUP1YOR157C BSD2P38356 321 aa11.43□□□□□ -0.58
PUP1YOR157C PNT1P38969 423 aa11.43□□□□□ -0.58
PUP1YOR157C SSP2Q08646 371 aa11.43□□□□□ -0.58
PUP1YOR157C CSR2Q12734 1121 aa11.43□□□□□ -0.58
PUP1YOR157C PAP2P53632 584 aaKnown RBP11.42□□□□□ -0.58
PUP1YOR157C SET4P42948 560 aa11.41□□□□□ -0.58
PUP1YOR157C SYF1Q04048 859 aaPredicted RBP11.41□□□□□ -0.58
PUP1YOR157C APL2P36000 726 aaPredicted RBP11.39□□□□□ -0.59
PUP1YOR157C CST9Q06032 482 aa11.39□□□□□ -0.59
PUP1YOR157C AFG2P32794 780 aa11.38□□□□□ -0.59
PUP1YOR157C GAS5Q08193 484 aa11.38□□□□□ -0.59
PUP1YOR157C NTH2P35172 780 aa11.37□□□□□ -0.59
PUP1YOR157C MOT2P34909 587 aaKnown RBP11.36□□□□□ -0.59
PUP1YOR157C PCS60P38137 543 aaKnown RBP RIP-Chip data11.36□□□□□ -0.59 RIP-Chip
PUP1YOR157C HAT1Q12341 374 aa11.35□□□□□ -0.59
PUP1YOR157C YPR204WQ08995 1032 aa11.34□□□□□ -0.59
PUP1YOR157C APE3P37302 537 aaKnown RBP11.33□□□□□ -0.6
PUP1YOR157C TIF4632P39936 914 aaKnown RBP11.33□□□□□ -0.6
PUP1YOR157C GSC2P40989 1895 aa11.32□□□□□ -0.6
PUP1YOR157C RRG1Q12167 365 aaPredicted RBP11.32□□□□□ -0.6
PUP1YOR157C RSC30P38781 883 aa11.31□□□□□ -0.6
PUP1YOR157C RRT6P53117 311 aaPredicted RBP11.31□□□□□ -0.6
PUP1YOR157C CRF1Q04930 467 aa11.31□□□□□ -0.6
PUP1YOR157C SSK22P25390 1331 aaPredicted RBP11.31□□□□□ -0.6
PUP1YOR157C CBP1P07252 654 aa11.29□□□□□ -0.6
PUP1YOR157C VPS64Q03944 604 aa11.29□□□□□ -0.6
PUP1YOR157C LYS2P07702 1392 aa11.28□□□□□ -0.6
PUP1YOR157C UGA3P26370 528 aa11.28□□□□□ -0.6
PUP1YOR157C NSR1P27476 414 aaKnown RBP RIP-Chip data11.28□□□□□ -0.6not detected
PUP1YOR157C YVH1Q02256 364 aaKnown RBP11.28□□□□□ -0.6
PUP1YOR157C SEN54Q02825 467 aaPredicted RBP11.28□□□□□ -0.6
PUP1YOR157C TRK1P12685 1235 aa11.27□□□□□ -0.61
PUP1YOR157C GSM1P42950 618 aa11.27□□□□□ -0.61
PUP1YOR157C ZDS2P54786 942 aa11.27□□□□□ -0.61
PUP1YOR157C FLO11P08640 1367 aa11.27□□□□□ -0.61
PUP1YOR157C YPR117WQ06116 2489 aa11.26□□□□□ -0.61
PUP1YOR157C TRP5P00931 707 aaKnown RBP11.26□□□□□ -0.61
PUP1YOR157C PDS5Q04264 1277 aa11.26□□□□□ -0.61
PUP1YOR157C KRE2P27809 442 aa11.25□□□□□ -0.61
PUP1YOR157C RBA50Q04418 439 aa11.25□□□□□ -0.61
PUP1YOR157C ISW2Q08773 1120 aa11.25□□□□□ -0.61
PUP1YOR157C NSE3Q05541 303 aa11.24□□□□□ -0.61
PUP1YOR157C SGD1Q06132 899 aa11.22□□□□□ -0.61
PUP1YOR157C ASH1P34233 588 aa11.2□□□□□ -0.62
PUP1YOR157C RPT4P53549 437 aaKnown RBP11.2□□□□□ -0.62
PUP1YOR157C FCP1Q03254 732 aa11.2□□□□□ -0.62
PUP1YOR157C JIP4Q03361 876 aa11.2□□□□□ -0.62
PUP1YOR157C FBP1P09201 348 aa11.19□□□□□ -0.62
PUP1YOR157C DPH6Q12429 685 aa11.19□□□□□ -0.62
PUP1YOR157C ICP55P40051 511 aa11.18□□□□□ -0.62
PUP1YOR157C PKH1Q03407 766 aa11.18□□□□□ -0.62
PUP1YOR157C SPL2P38839 148 aa11.17□□□□□ -0.62
PUP1YOR157C UTP7P40055 554 aaKnown RBP11.17□□□□□ -0.62
PUP1YOR157C UBX2Q04228 584 aa11.16□□□□□ -0.62
PUP1YOR157C YLR225CQ05948 407 aaKnown RBP11.16□□□□□ -0.62
PUP1YOR157C PAH1P32567 862 aa11.15□□□□□ -0.62
PUP1YOR157C PSD2P53037 1138 aaKnown RBP11.15□□□□□ -0.62
PUP1YOR157C MTC3P53077 123 aa11.15□□□□□ -0.62
PUP1YOR157C YNL050CP53952 270 aa11.15□□□□□ -0.62
PUP1YOR157C AAD16Q02895 342 aa11.15□□□□□ -0.62
PUP1YOR157C PRP42Q03776 544 aaKnown RBP11.15□□□□□ -0.62
PUP1YOR157C TOS4Q06266 489 aa11.15□□□□□ -0.62
PUP1YOR157C TAO3P40468 2376 aa11.14□□□□□ -0.63
PUP1YOR157C AVT3P36062 692 aa11.14□□□□□ -0.63
PUP1YOR157C POL5P39985 1022 aaKnown RBP11.14□□□□□ -0.63
PUP1YOR157C RRP46P53256 223 aaPredicted RBP11.14□□□□□ -0.63
PUP1YOR157C YLR271WQ06152 274 aa11.14□□□□□ -0.63
PUP1YOR157C RPS7AP26786 190 aaKnown RBP11.13□□□□□ -0.63
PUP1YOR157C ULP1Q02724 621 aa11.13□□□□□ -0.63
PUP1YOR157C COQ4O13525 335 aa11.12□□□□□ -0.63
PUP1YOR157C NIT1P40447 199 aa11.12□□□□□ -0.63
PUP1YOR157C CLA4P48562 842 aa11.12□□□□□ -0.63
PUP1YOR157C PEX29Q03370 554 aa11.12□□□□□ -0.63
PUP1YOR157C YBR287WP38355 427 aa11.11□□□□□ -0.63
PUP1YOR157C MGM1P32266 881 aa11.1□□□□□ -0.63
PUP1YOR157C SPR3P41901 512 aa11.1□□□□□ -0.63
PUP1YOR157C THI3Q07471 609 aa11.09□□□□□ -0.63
PUP1YOR157C BMS1Q08965 1183 aaKnown RBP11.09□□□□□ -0.63
PUP1YOR157C GAL2P13181 574 aa11.08□□□□□ -0.64
PUP1YOR157C NGR1P32831 672 aaKnown RBP11.08□□□□□ -0.64
PUP1YOR157C PSF2P40359 213 aa11.08□□□□□ -0.64
PUP1YOR157C ARG82P07250 355 aa11.07□□□□□ -0.64
PUP1YOR157C DLD1P32891 587 aa11.07□□□□□ -0.64
PUP1YOR157C ZDS1P50111 915 aaKnown RBP11.07□□□□□ -0.64
PUP1YOR157C PFK2P16862 959 aaKnown RBP RIP-Chip data11.06□□□□□ -0.64not detected
PUP1YOR157C IRC4Q03036 179 aa11.06□□□□□ -0.64
PUP1YOR157C LCB1P25045 558 aaKnown RBP11.05□□□□□ -0.64
PUP1YOR157C GIN4Q12263 1142 aa11.05□□□□□ -0.64
Retrieved 100 of 5,963 RNA–protein pairs in 104.5 ms