RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USA1	YML029W	RAD2	P07276	1031 aa		4.81	□□□□□ -1.64
USA1	YML029W	MRP7	P12687	371 aa		4.81	□□□□□ -1.64
USA1	YML029W	DAL5	P15365	543 aa		4.81	□□□□□ -1.64
USA1	YML029W	SIT4	P20604	311 aa		4.81	□□□□□ -1.64
USA1	YML029W	MTC5	Q03897	1148 aa		4.81	□□□□□ -1.64
USA1	YML029W	RPS19A	P07280	144 aa	Known RBP	4.8	□□□□□ -1.64
USA1	YML029W	RPS19B	P07281	144 aa	Predicted RBP	4.8	□□□□□ -1.64
USA1	YML029W	HPC2	Q01448	625 aa		4.8	□□□□□ -1.64
USA1	YML029W	YPR204W	Q08995	1032 aa		4.8	□□□□□ -1.64
USA1	YML029W	ARG8	P18544	423 aa		4.8	□□□□□ -1.64
USA1	YML029W	ERO1	Q03103	563 aa		4.8	□□□□□ -1.64
USA1	YML029W	UBX2	Q04228	584 aa		4.8	□□□□□ -1.64
USA1	YML029W	SWI1	P09547	1314 aa		4.8	□□□□□ -1.64
USA1	YML029W	SYF1	Q04048	859 aa	Predicted RBP	4.79	□□□□□ -1.64
USA1	YML029W	NOP8	Q08287	484 aa	Predicted RBP	4.79	□□□□□ -1.64
USA1	YML029W	SSA1	P10591	642 aa	Known RBP	4.79	□□□□□ -1.64
USA1	YML029W	SER1	P33330	395 aa	Known RBP	4.78	□□□□□ -1.64
USA1	YML029W	GRX6	Q12438	231 aa		4.78	□□□□□ -1.64
USA1	YML029W	SSF1	P38789	453 aa	Predicted RBP	4.78	□□□□□ -1.64
USA1	YML029W	FUN12	P39730	1002 aa	Known RBP	4.78	□□□□□ -1.64
USA1	YML029W	MSN5	P52918	1224 aa		4.78	□□□□□ -1.64
USA1	YML029W	BDF2	Q07442	638 aa		4.78	□□□□□ -1.64
USA1	YML029W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	4.78	□□□□□ -1.64	not detected
USA1	YML029W	RLF2	Q12495	606 aa		4.78	□□□□□ -1.64
USA1	YML029W	YBR287W	P38355	427 aa		4.77	□□□□□ -1.65
USA1	YML029W	YIL092W	P40497	633 aa		4.77	□□□□□ -1.65
USA1	YML029W	NUG1	P40010	520 aa	Known RBP	4.77	□□□□□ -1.65
USA1	YML029W	PSF3	Q12146	194 aa		4.77	□□□□□ -1.65
USA1	YML029W	ECM16	Q04217	1267 aa	Known RBP	4.76	□□□□□ -1.65
USA1	YML029W	IRC3	Q06683	689 aa		4.76	□□□□□ -1.65
USA1	YML029W	GCD7	P32502	381 aa	Predicted RBP	4.76	□□□□□ -1.65
USA1	YML029W	BOI2	P39969	1040 aa		4.76	□□□□□ -1.65
USA1	YML029W	YER156C	P40093	338 aa	Known RBP	4.76	□□□□□ -1.65
USA1	YML029W	UBP12	P39538	1254 aa		4.75	□□□□□ -1.65
USA1	YML029W	ITC1	P53125	1264 aa		4.75	□□□□□ -1.65
USA1	YML029W	YGL082W	P53155	381 aa		4.75	□□□□□ -1.65
USA1	YML029W	UBP16	Q02863	499 aa		4.75	□□□□□ -1.65
USA1	YML029W	CST9	Q06032	482 aa		4.75	□□□□□ -1.65
USA1	YML029W	DCD1	P06773	312 aa		4.75	□□□□□ -1.65
USA1	YML029W	NPL4	P33755	580 aa		4.75	□□□□□ -1.65
USA1	YML029W	MGA2	P40578	1113 aa		4.75	□□□□□ -1.65
USA1	YML029W	NUP133	P36161	1157 aa		4.74	□□□□□ -1.65
USA1	YML029W	PKH1	Q03407	766 aa		4.74	□□□□□ -1.65
USA1	YML029W	VPS64	Q03944	604 aa		4.74	□□□□□ -1.65
USA1	YML029W	APL2	P36000	726 aa	Predicted RBP	4.74	□□□□□ -1.65
USA1	YML029W	FPR3	P38911	411 aa	Known RBP	4.74	□□□□□ -1.65
USA1	YML029W	SHC1	P39000	512 aa		4.74	□□□□□ -1.65
USA1	YML029W	RIX7	Q07844	837 aa	Known RBP	4.74	□□□□□ -1.65
USA1	YML029W	PSH1	Q12161	406 aa		4.74	□□□□□ -1.65
USA1	YML029W	DPH6	Q12429	685 aa		4.74	□□□□□ -1.65
USA1	YML029W	FPK1	P53739	893 aa		4.73	□□□□□ -1.65
USA1	YML029W	CSI1	Q04368	295 aa		4.73	□□□□□ -1.65
USA1	YML029W	ADR1	P07248	1323 aa		4.73	□□□□□ -1.65
USA1	YML029W	PIF1	P07271	859 aa		4.73	□□□□□ -1.65
USA1	YML029W	ZDS2	P54786	942 aa		4.73	□□□□□ -1.65
USA1	YML029W	FIG2	P25653	1609 aa		4.72	□□□□□ -1.65
USA1	YML029W	RAD24	P32641	659 aa		4.72	□□□□□ -1.65
USA1	YML029W	GEF1	P37020	779 aa		4.72	□□□□□ -1.65
USA1	YML029W	SNU66	Q12420	587 aa	Predicted RBP	4.72	□□□□□ -1.65
USA1	YML029W	YNG2	P38806	282 aa	Known RBP	4.72	□□□□□ -1.65
USA1	YML029W	EAF6	P47128	113 aa		4.72	□□□□□ -1.65
USA1	YML029W	CTI6	Q08923	506 aa		4.72	□□□□□ -1.65
USA1	YML029W	TIF4632	P39936	914 aa	Known RBP	4.71	□□□□□ -1.66
USA1	YML029W	POL32	P47110	350 aa		4.71	□□□□□ -1.66
USA1	YML029W	CWH41	P53008	833 aa		4.71	□□□□□ -1.66
USA1	YML029W	KIN4	Q01919	800 aa		4.71	□□□□□ -1.66
USA1	YML029W	NCB2	Q92317	146 aa		4.71	□□□□□ -1.66
USA1	YML029W	TRP5	P00931	707 aa	Known RBP	4.71	□□□□□ -1.66
USA1	YML029W	YKU70	P32807	602 aa		4.71	□□□□□ -1.66
USA1	YML029W	ICP55	P40051	511 aa		4.71	□□□□□ -1.66
USA1	YML029W	HKR1	P41809	1802 aa		4.71	□□□□□ -1.66
USA1	YML029W	SMY1	P32364	656 aa	Known RBP	4.7	□□□□□ -1.66
USA1	YML029W	YGR122W	P53272	402 aa		4.7	□□□□□ -1.66
USA1	YML029W	SAS4	Q04003	481 aa		4.7	□□□□□ -1.66
USA1	YML029W	POM152	P39685	1337 aa		4.7	□□□□□ -1.66
USA1	YML029W	KRE2	P27809	442 aa		4.7	□□□□□ -1.66
USA1	YML029W	NOP2	P40991	618 aa	Known RBP	4.7	□□□□□ -1.66
USA1	YML029W	PUF6	Q04373	656 aa	Known RBP	4.7	□□□□□ -1.66
USA1	YML029W	AAD16	Q02895	342 aa		4.69	□□□□□ -1.66
USA1	YML029W	CRF1	Q04930	467 aa		4.69	□□□□□ -1.66
USA1	YML029W	GYP5	Q12344	894 aa		4.69	□□□□□ -1.66
USA1	YML029W	FRD1	P32614	470 aa	Known RBP	4.69	□□□□□ -1.66
USA1	YML029W	OSH3	P38713	996 aa	Known RBP	4.69	□□□□□ -1.66
USA1	YML029W	SRC1	Q03707	834 aa		4.69	□□□□□ -1.66
USA1	YML029W	ATG20	Q07528	640 aa		4.69	□□□□□ -1.66
USA1	YML029W	CYB2	P00175	591 aa		4.68	□□□□□ -1.66
USA1	YML029W	CDC16	P09798	840 aa		4.68	□□□□□ -1.66
USA1	YML029W	SWC3	P31376	625 aa		4.68	□□□□□ -1.66
USA1	YML029W	MLC1	P53141	149 aa		4.68	□□□□□ -1.66
USA1	YML029W	DPL1	Q05567	589 aa		4.68	□□□□□ -1.66
USA1	YML029W	MSM1	P22438	575 aa		4.67	□□□□□ -1.66
USA1	YML029W	ILV3	P39522	585 aa	Known RBP	4.67	□□□□□ -1.66
USA1	YML029W	SPO1	P53541	631 aa		4.67	□□□□□ -1.66
USA1	YML029W	MGM1	P32266	881 aa		4.67	□□□□□ -1.66
USA1	YML029W	ACK1	Q07622	623 aa	Predicted RBP	4.67	□□□□□ -1.66
USA1	YML029W	PMD1	P32634	1753 aa		4.66	□□□□□ -1.66
USA1	YML029W	SPB4	P25808	606 aa	Predicted RBP	4.66	□□□□□ -1.66
USA1	YML029W	GLC3	P32775	704 aa		4.66	□□□□□ -1.66
USA1	YML029W	YKR023W	P36119	530 aa	Known RBP	4.66	□□□□□ -1.66
USA1	YML029W	PES4	P39684	611 aa		4.66	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 31.3 ms