RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W MRM1P25270 412 aa5.65□□□□□ -1.5
SSH4YKL124W PRD1P25375 712 aa5.65□□□□□ -1.5
SSH4YKL124W SSK22P25390 1331 aaPredicted RBP5.65□□□□□ -1.5
SSH4YKL124W CWH41P53008 833 aa5.65□□□□□ -1.5
SSH4YKL124W SER1P33330 395 aaKnown RBP5.65□□□□□ -1.51
SSH4YKL124W ZDS1P50111 915 aaKnown RBP5.64□□□□□ -1.51
SSH4YKL124W ERO1Q03103 563 aa5.64□□□□□ -1.51
SSH4YKL124W CTI6Q08923 506 aa5.64□□□□□ -1.51
SSH4YKL124W MST1P07236 462 aa5.63□□□□□ -1.51
SSH4YKL124W ARG8P18544 423 aa5.63□□□□□ -1.51
SSH4YKL124W NSR1P27476 414 aaKnown RBP RIP-Chip data5.63□□□□□ -1.51not detected
SSH4YKL124W SMY1P32364 656 aaKnown RBP5.63□□□□□ -1.51
SSH4YKL124W SNU71P53207 620 aaKnown RBP5.63□□□□□ -1.51
SSH4YKL124W FPK1P53739 893 aa5.63□□□□□ -1.51
SSH4YKL124W BDF2Q07442 638 aa5.63□□□□□ -1.51
SSH4YKL124W TOP1P04786 769 aa5.62□□□□□ -1.51
SSH4YKL124W SIS2P36024 562 aa5.62□□□□□ -1.51
SSH4YKL124W YGL082WP53155 381 aa5.62□□□□□ -1.51
SSH4YKL124W RLF2Q12495 606 aa5.62□□□□□ -1.51
SSH4YKL124W YBL029C-AQ3E756 94 aa5.62□□□□□ -1.51
SSH4YKL124W SIT4P20604 311 aa5.62□□□□□ -1.51
SSH4YKL124W SQS1P53866 767 aaKnown RBP5.62□□□□□ -1.51
SSH4YKL124W IRC3Q06683 689 aa5.62□□□□□ -1.51
SSH4YKL124W YPR204WQ08995 1032 aa5.62□□□□□ -1.51
SSH4YKL124W THI22Q06490 572 aa5.61□□□□□ -1.51
SSH4YKL124W BMS1Q08965 1183 aaKnown RBP5.61□□□□□ -1.51
SSH4YKL124W PMD1P32634 1753 aa5.61□□□□□ -1.51
SSH4YKL124W COQ4O13525 335 aa5.6□□□□□ -1.51
SSH4YKL124W GYP7P48365 746 aa5.6□□□□□ -1.51
SSH4YKL124W CST9Q06032 482 aa5.6□□□□□ -1.51
SSH4YKL124W HAT1Q12341 374 aa5.6□□□□□ -1.51
SSH4YKL124W SHC1P39000 512 aa5.6□□□□□ -1.51
SSH4YKL124W MGA2P40578 1113 aa5.6□□□□□ -1.51
SSH4YKL124W YOL057WQ08225 711 aa5.6□□□□□ -1.51
SSH4YKL124W GRX6Q12438 231 aa5.6□□□□□ -1.51
SSH4YKL124W APL2P36000 726 aaPredicted RBP5.59□□□□□ -1.51
SSH4YKL124W PEX21P50091 288 aa5.59□□□□□ -1.51
SSH4YKL124W HEF3P53978 1044 aaKnown RBP5.59□□□□□ -1.51
SSH4YKL124W UBP16Q02863 499 aa5.59□□□□□ -1.51
SSH4YKL124W PIB1Q06651 286 aa5.59□□□□□ -1.51
SSH4YKL124W RTT109Q07794 436 aa5.59□□□□□ -1.51
SSH4YKL124W WSC3Q12215 556 aa5.59□□□□□ -1.51
SSH4YKL124W KRI1P42846 591 aaKnown RBP5.58□□□□□ -1.52
SSH4YKL124W MPP10P47083 593 aaKnown RBP5.58□□□□□ -1.52
SSH4YKL124W YJR008WP47085 338 aa5.58□□□□□ -1.52
SSH4YKL124W DNM1P54861 757 aa5.58□□□□□ -1.52
SSH4YKL124W SYF1Q04048 859 aaPredicted RBP5.58□□□□□ -1.52
SSH4YKL124W FIG2P25653 1609 aa5.57□□□□□ -1.52
SSH4YKL124W ATG20Q07528 640 aa5.57□□□□□ -1.52
SSH4YKL124W YDL144CQ07589 356 aa5.57□□□□□ -1.52
SSH4YKL124W HKR1P41809 1802 aa5.57□□□□□ -1.52
SSH4YKL124W RPP0P05317 312 aaKnown RBP5.57□□□□□ -1.52
SSH4YKL124W SSA4P22202 642 aaKnown RBP5.57□□□□□ -1.52
SSH4YKL124W ICL1P28240 557 aaPredicted RBP5.57□□□□□ -1.52
SSH4YKL124W YKU70P32807 602 aa5.57□□□□□ -1.52
SSH4YKL124W VPS64Q03944 604 aa5.57□□□□□ -1.52
SSH4YKL124W PUS5Q06244 254 aa5.57□□□□□ -1.52
SSH4YKL124W SWI1P09547 1314 aa5.56□□□□□ -1.52
SSH4YKL124W CST6P40535 587 aa5.56□□□□□ -1.52
SSH4YKL124W ZDS2P54786 942 aa5.56□□□□□ -1.52
SSH4YKL124W SAS4Q04003 481 aa5.56□□□□□ -1.52
SSH4YKL124W YDR306CQ06640 478 aa5.56□□□□□ -1.52
SSH4YKL124W SAC3P46674 1301 aa5.55□□□□□ -1.52
SSH4YKL124W YLR278CQ05854 1341 aa5.55□□□□□ -1.52
SSH4YKL124W SLI15P38283 698 aa5.55□□□□□ -1.52
SSH4YKL124W RPN1P38764 993 aaKnown RBP5.55□□□□□ -1.52
SSH4YKL124W SET1P38827 1080 aaKnown RBP5.55□□□□□ -1.52
SSH4YKL124W SRT1Q03175 343 aa5.55□□□□□ -1.52
SSH4YKL124W RET1P22276 1149 aaKnown RBP5.54□□□□□ -1.52
SSH4YKL124W TPD3P31383 635 aa5.54□□□□□ -1.52
SSH4YKL124W RTG2P32608 588 aaKnown RBP5.54□□□□□ -1.52
SSH4YKL124W YBR287WP38355 427 aa5.54□□□□□ -1.52
SSH4YKL124W VNX1P42839 908 aa5.54□□□□□ -1.52
SSH4YKL124W PKH1Q03407 766 aa5.54□□□□□ -1.52
SSH4YKL124W CAF20P12962 161 aaKnown RBP5.54□□□□□ -1.52
SSH4YKL124W FRD1P32614 470 aaKnown RBP5.54□□□□□ -1.52
SSH4YKL124W RRD1P40454 393 aaKnown RBP5.54□□□□□ -1.52
SSH4YKL124W UBX2Q04228 584 aa5.54□□□□□ -1.52
SSH4YKL124W MRP7P12687 371 aa5.53□□□□□ -1.52
SSH4YKL124W SPP1Q03012 353 aa5.53□□□□□ -1.52
SSH4YKL124W DPL1Q05567 589 aa5.53□□□□□ -1.52
SSH4YKL124W THS1P04801 734 aaKnown RBP5.52□□□□□ -1.53
SSH4YKL124W NUP133P36161 1157 aa5.52□□□□□ -1.53
SSH4YKL124W DPH6Q12429 685 aa5.52□□□□□ -1.53
SSH4YKL124W MSM1P22438 575 aa5.51□□□□□ -1.53
SSH4YKL124W MTC5Q03897 1148 aa5.51□□□□□ -1.53
SSH4YKL124W FAS2P19097 1887 aaKnown RBP5.51□□□□□ -1.53
SSH4YKL124W GLC3P32775 704 aa5.51□□□□□ -1.53
SSH4YKL124W VPS27P40343 622 aaKnown RBP5.51□□□□□ -1.53
SSH4YKL124W TIM50Q02776 476 aa5.51□□□□□ -1.53
SSH4YKL124W FCP1Q03254 732 aa5.51□□□□□ -1.53
SSH4YKL124W SUI2P20459 304 aaKnown RBP5.5□□□□□ -1.53
SSH4YKL124W KRE2P27809 442 aa5.5□□□□□ -1.53
SSH4YKL124W ICP55P40051 511 aa5.5□□□□□ -1.53
SSH4YKL124W ITC1P53125 1264 aa5.5□□□□□ -1.53
SSH4YKL124W CDC45Q08032 650 aa5.49□□□□□ -1.53
SSH4YKL124W PSH1Q12161 406 aa5.49□□□□□ -1.53
SSH4YKL124W MAK21Q12176 1025 aaKnown RBP5.49□□□□□ -1.53
SSH4YKL124W TRP5P00931 707 aaKnown RBP5.48□□□□□ -1.53
SSH4YKL124W FET4P40988 552 aa5.48□□□□□ -1.53
Retrieved 100 of 5,963 RNA–protein pairs in 15 ms