RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W TY2B-DR3Q07791 1770 aaKnown RBP9.32□□□□□ -0.92
UFD1YGR048W TY2B-OR1Q12113 1770 aa9.32□□□□□ -0.92
UFD1YGR048W TY2B-DR1Q12472 1770 aa9.32□□□□□ -0.92
UFD1YGR048W TY2B-OR2Q12501 1770 aa9.32□□□□□ -0.92
UFD1YGR048W CYC8P14922 966 aa9.31□□□□□ -0.92
UFD1YGR048W RTT107P38850 1070 aa9.31□□□□□ -0.92
UFD1YGR048W BDH2P39713 417 aa9.31□□□□□ -0.92
UFD1YGR048W POL32P47110 350 aa9.31□□□□□ -0.92
UFD1YGR048W YNL050CP53952 270 aa9.31□□□□□ -0.92
UFD1YGR048W VPS30Q02948 557 aa9.31□□□□□ -0.92
UFD1YGR048W YMR102CQ03177 834 aa9.31□□□□□ -0.92
UFD1YGR048W CSC1Q06538 782 aa9.31□□□□□ -0.92
UFD1YGR048W HAP1P0CE41 1502 aa9.31□□□□□ -0.92
UFD1YGR048W CIR1P42940 261 aa9.3□□□□□ -0.92
UFD1YGR048W YSH1Q06224 779 aaPredicted RBP9.3□□□□□ -0.92
UFD1YGR048W RRP15Q06511 250 aaPredicted RBP9.3□□□□□ -0.92
UFD1YGR048W SNT2P53127 1403 aa9.3□□□□□ -0.92
UFD1YGR048W SCT1P32784 759 aa9.29□□□□□ -0.92
UFD1YGR048W IES2P40154 320 aa9.29□□□□□ -0.92
UFD1YGR048W PAP2P53632 584 aaKnown RBP9.29□□□□□ -0.92
UFD1YGR048W KRE33P53914 1056 aaKnown RBP9.29□□□□□ -0.92
UFD1YGR048W SEC39Q12745 709 aa9.29□□□□□ -0.92
UFD1YGR048W TY2B-BQ12491 1770 aa9.29□□□□□ -0.92
UFD1YGR048W RAD3P06839 778 aa9.28□□□□□ -0.92
UFD1YGR048W MSH1P25846 959 aa9.28□□□□□ -0.92
UFD1YGR048W DSF2P38213 736 aa9.28□□□□□ -0.92
UFD1YGR048W RVS167P39743 482 aaKnown RBP9.28□□□□□ -0.92
UFD1YGR048W YIL092WP40497 633 aa9.28□□□□□ -0.92
UFD1YGR048W TFB4Q12004 338 aa9.28□□□□□ -0.92
UFD1YGR048W PUS1Q12211 544 aaKnown RBP9.28□□□□□ -0.92
UFD1YGR048W PSE1P32337 1089 aaKnown RBP9.27□□□□□ -0.93
UFD1YGR048W MPE1P35728 441 aaKnown RBP9.27□□□□□ -0.93
UFD1YGR048W VPS41P38959 992 aa9.27□□□□□ -0.93
UFD1YGR048W MVP1P40959 511 aaKnown RBP9.27□□□□□ -0.93
UFD1YGR048W MPP10P47083 593 aaKnown RBP9.27□□□□□ -0.93
UFD1YGR048W RLP24Q07915 199 aaKnown RBP9.27□□□□□ -0.93
UFD1YGR048W SNF2P22082 1703 aa9.27□□□□□ -0.93
UFD1YGR048W ZUO1P32527 433 aaKnown RBP9.26□□□□□ -0.93
UFD1YGR048W ERV41Q04651 352 aa9.26□□□□□ -0.93
UFD1YGR048W HST1P53685 503 aa9.25□□□□□ -0.93
UFD1YGR048W YVC1Q12324 675 aa9.25□□□□□ -0.93
UFD1YGR048W IQG1Q12280 1495 aa9.25□□□□□ -0.93
UFD1YGR048W RGR1P19263 1082 aa9.24□□□□□ -0.93
UFD1YGR048W MRC1P25588 1096 aa9.24□□□□□ -0.93
UFD1YGR048W RIO2P40160 425 aaKnown RBP9.24□□□□□ -0.93
UFD1YGR048W RSM25P40496 264 aa9.24□□□□□ -0.93
UFD1YGR048W PXR1P53335 271 aaPredicted RBP9.24□□□□□ -0.93
UFD1YGR048W MDM38Q08179 573 aa9.24□□□□□ -0.93
UFD1YGR048W PDR12Q02785 1511 aa9.24□□□□□ -0.93
UFD1YGR048W NUP145P49687 1317 aa9.24□□□□□ -0.93
UFD1YGR048W PET111P08468 800 aa9.23□□□□□ -0.93
UFD1YGR048W DAL5P15365 543 aa9.23□□□□□ -0.93
UFD1YGR048W SPT5P27692 1063 aaKnown RBP9.23□□□□□ -0.93
UFD1YGR048W GYP1Q08484 637 aa9.23□□□□□ -0.93
UFD1YGR048W NUD1P32336 851 aa9.22□□□□□ -0.93
UFD1YGR048W YPR109WQ06104 294 aa9.22□□□□□ -0.93
UFD1YGR048W YRF1-4O13559 1382 aa9.22□□□□□ -0.93
UFD1YGR048W YML133CQ03099 1374 aa9.22□□□□□ -0.93
UFD1YGR048W YLL067CQ07888 1374 aa9.22□□□□□ -0.93
UFD1YGR048W YLL066CQ99208 1374 aa9.22□□□□□ -0.93
UFD1YGR048W HYR1P40581 163 aaKnown RBP9.21□□□□□ -0.94
UFD1YGR048W SAP155P43612 1002 aa9.21□□□□□ -0.94
UFD1YGR048W STR2P47164 639 aa9.21□□□□□ -0.94
UFD1YGR048W VTH1P40438 1549 aa9.21□□□□□ -0.94
UFD1YGR048W VTH2P40890 1549 aa9.21□□□□□ -0.94
UFD1YGR048W MLP1Q02455 1875 aaKnown RBP9.2□□□□□ -0.94
UFD1YGR048W RPS0AP32905 252 aaKnown RBP9.2□□□□□ -0.94
UFD1YGR048W GDT1P38301 280 aaPredicted RBP9.2□□□□□ -0.94
UFD1YGR048W TIM50Q02776 476 aa9.2□□□□□ -0.94
UFD1YGR048W BUD21Q08492 214 aaPredicted RBP9.2□□□□□ -0.94
UFD1YGR048W AUS1Q08409 1394 aa9.2□□□□□ -0.94
UFD1YGR048W TRK1P12685 1235 aa9.19□□□□□ -0.94
UFD1YGR048W RRP14P36080 434 aaKnown RBP9.19□□□□□ -0.94
UFD1YGR048W NPA3P47122 385 aa9.19□□□□□ -0.94
UFD1YGR048W ISM1P48526 1002 aa9.19□□□□□ -0.94
UFD1YGR048W PUF6Q04373 656 aaKnown RBP9.19□□□□□ -0.94
UFD1YGR048W DPS1P04802 557 aaKnown RBP9.18□□□□□ -0.94
UFD1YGR048W TAF13P11747 167 aa9.18□□□□□ -0.94
UFD1YGR048W KAR3P17119 729 aa9.18□□□□□ -0.94
UFD1YGR048W MRPL10P36520 322 aa9.18□□□□□ -0.94
UFD1YGR048W TAF5P38129 798 aa9.18□□□□□ -0.94
UFD1YGR048W NDC80P40460 691 aa9.18□□□□□ -0.94
UFD1YGR048W BDP1P46678 594 aa9.18□□□□□ -0.94
UFD1YGR048W NUP42P49686 430 aaKnown RBP9.18□□□□□ -0.94
UFD1YGR048W TLG2Q08144 397 aa9.18□□□□□ -0.94
UFD1YGR048W YKL068W-AQ3E826 78 aa9.18□□□□□ -0.94
UFD1YGR048W MFT1P33441 392 aaKnown RBP9.17□□□□□ -0.94
UFD1YGR048W HRQ1Q05549 1077 aa9.17□□□□□ -0.94
UFD1YGR048W BUD20Q08004 166 aaPredicted RBP9.17□□□□□ -0.94
UFD1YGR048W RTC1Q08281 1341 aa9.16□□□□□ -0.94
UFD1YGR048W YEF3P16521 1044 aaKnown RBP9.16□□□□□ -0.94
UFD1YGR048W DIT2P21595 489 aa9.16□□□□□ -0.94
UFD1YGR048W DLD1P32891 587 aa9.16□□□□□ -0.94
UFD1YGR048W NPL4P33755 580 aa9.16□□□□□ -0.94
UFD1YGR048W RSC8P43609 557 aaKnown RBP9.16□□□□□ -0.94
UFD1YGR048W APL5Q08951 932 aaKnown RBP9.16□□□□□ -0.94
UFD1YGR048W LTE1P07866 1435 aa9.15□□□□□ -0.94
UFD1YGR048W TY1B-HO13535 1793 aa9.15□□□□□ -0.94
UFD1YGR048W TY1B-DR5P0C2I2 1755 aa9.15□□□□□ -0.94
UFD1YGR048W TY1B-DR6P0C2I3 1755 aa9.15□□□□□ -0.94
Retrieved 100 of 5,963 RNA–protein pairs in 38.7 ms