RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	MDJ2	P42834	146 aa		5.53	□□□□□ -1.52
UBX5	YDR330W	ISR1	Q06098	443 aa	Known RBP	5.53	□□□□□ -1.52
UBX5	YDR330W	STU1	P38198	1513 aa		5.52	□□□□□ -1.53
UBX5	YDR330W	YML082W	Q04533	649 aa	Known RBP	5.52	□□□□□ -1.53
UBX5	YDR330W	YPR015C	Q12531	247 aa		5.52	□□□□□ -1.53
UBX5	YDR330W	SCC2	Q04002	1493 aa		5.51	□□□□□ -1.53
UBX5	YDR330W	GLO3	P38682	493 aa	Known RBP	5.51	□□□□□ -1.53
UBX5	YDR330W	BOL3	P39724	118 aa		5.51	□□□□□ -1.53
UBX5	YDR330W	THI12	P42883	340 aa		5.51	□□□□□ -1.53
UBX5	YDR330W	THI5	P43534	340 aa		5.51	□□□□□ -1.53
UBX5	YDR330W	POL32	P47110	350 aa		5.51	□□□□□ -1.53
UBX5	YDR330W	THI11	P47183	340 aa		5.51	□□□□□ -1.53
UBX5	YDR330W	ATG20	Q07528	640 aa		5.51	□□□□□ -1.53
UBX5	YDR330W	THI13	Q07748	340 aa		5.51	□□□□□ -1.53
UBX5	YDR330W	HAL5	P38970	855 aa	Known RBP	5.5	□□□□□ -1.53
UBX5	YDR330W	ACF4	P47129	309 aa		5.5	□□□□□ -1.53
UBX5	YDR330W	CWH41	P53008	833 aa		5.5	□□□□□ -1.53
UBX5	YDR330W	RGA2	Q06407	1009 aa		5.5	□□□□□ -1.53
UBX5	YDR330W	HDA3	Q06623	655 aa		5.5	□□□□□ -1.53
UBX5	YDR330W	MMS22	Q06164	1454 aa		5.5	□□□□□ -1.53
UBX5	YDR330W	KIP2	P28743	706 aa		5.49	□□□□□ -1.53
UBX5	YDR330W	QDR1	P40475	563 aa		5.49	□□□□□ -1.53
UBX5	YDR330W	ALD4	P46367	519 aa	Known RBP	5.49	□□□□□ -1.53
UBX5	YDR330W	SAS4	Q04003	481 aa		5.49	□□□□□ -1.53
UBX5	YDR330W	RPO31	P04051	1460 aa		5.49	□□□□□ -1.53
UBX5	YDR330W	RKR1	Q04781	1562 aa		5.49	□□□□□ -1.53
UBX5	YDR330W	YTA7	P40340	1379 aa		5.49	□□□□□ -1.53
UBX5	YDR330W	MOD5	P07884	428 aa		5.48	□□□□□ -1.53
UBX5	YDR330W	UBP1	P25037	809 aa		5.48	□□□□□ -1.53
UBX5	YDR330W	NTH2	P35172	780 aa		5.48	□□□□□ -1.53
UBX5	YDR330W	ALD2	P47771	506 aa		5.48	□□□□□ -1.53
UBX5	YDR330W	PRE3	P38624	215 aa		5.48	□□□□□ -1.53
UBX5	YDR330W	SVF1	Q05515	481 aa		5.48	□□□□□ -1.53
UBX5	YDR330W	RRP15	Q06511	250 aa	Predicted RBP	5.48	□□□□□ -1.53
UBX5	YDR330W	GYP1	Q08484	637 aa		5.48	□□□□□ -1.53
UBX5	YDR330W	YOR1	P53049	1477 aa		5.47	□□□□□ -1.53
UBX5	YDR330W	MGE1	P38523	228 aa		5.47	□□□□□ -1.53
UBX5	YDR330W	WHI5	Q12416	295 aa		5.47	□□□□□ -1.53
UBX5	YDR330W	BPT1	P14772	1559 aa		5.46	□□□□□ -1.54
UBX5	YDR330W	CYT1	P07143	309 aa		5.46	□□□□□ -1.54
UBX5	YDR330W	ATE1	P16639	503 aa		5.46	□□□□□ -1.54
UBX5	YDR330W	SPR3	P41901	512 aa		5.46	□□□□□ -1.54
UBX5	YDR330W	NUT2	Q06213	157 aa		5.46	□□□□□ -1.54
UBX5	YDR330W	LSO1	Q3E827	93 aa		5.46	□□□□□ -1.54
UBX5	YDR330W	TOP2	P06786	1428 aa	Known RBP	5.45	□□□□□ -1.54
UBX5	YDR330W	TY2B-LR1	P0C2J3	1770 aa		5.45	□□□□□ -1.54
UBX5	YDR330W	TY2B-F	P0CX63	1770 aa		5.45	□□□□□ -1.54
UBX5	YDR330W	TY2B-GR2	P0CX64	1770 aa		5.45	□□□□□ -1.54
UBX5	YDR330W	TY2B-C	P25384	1770 aa		5.45	□□□□□ -1.54
UBX5	YDR330W	TY2B-DR2	Q03494	1770 aa		5.45	□□□□□ -1.54
UBX5	YDR330W	TY1B-DR1	Q03855	1755 aa		5.45	□□□□□ -1.54
UBX5	YDR330W	TY2B-DR3	Q07791	1770 aa	Known RBP	5.45	□□□□□ -1.54
UBX5	YDR330W	TY2B-OR1	Q12113	1770 aa		5.45	□□□□□ -1.54
UBX5	YDR330W	TY2B-DR1	Q12472	1770 aa		5.45	□□□□□ -1.54
UBX5	YDR330W	TY2B-OR2	Q12501	1770 aa		5.45	□□□□□ -1.54
UBX5	YDR330W	RPS6A	P0CX37	236 aa	Known RBP	5.45	□□□□□ -1.54
UBX5	YDR330W	RPS6B	P0CX38	236 aa	Predicted RBP	5.45	□□□□□ -1.54
UBX5	YDR330W	UFD4	P33202	1483 aa		5.45	□□□□□ -1.54
UBX5	YDR330W	YCF1	P39109	1515 aa	Known RBP	5.45	□□□□□ -1.54
UBX5	YDR330W	CHL1	P22516	861 aa	Predicted RBP	5.44	□□□□□ -1.54
UBX5	YDR330W	MRF1	P30775	413 aa	Predicted RBP	5.44	□□□□□ -1.54
UBX5	YDR330W	NGR1	P32831	672 aa	Known RBP	5.44	□□□□□ -1.54
UBX5	YDR330W	EMW1	P42842	904 aa	Known RBP	5.44	□□□□□ -1.54
UBX5	YDR330W	SYH1	Q02875	849 aa	Known RBP	5.44	□□□□□ -1.54
UBX5	YDR330W	FRT1	Q99332	602 aa		5.44	□□□□□ -1.54
UBX5	YDR330W	RPP2B	P02400	110 aa	Known RBP	5.43	□□□□□ -1.54
UBX5	YDR330W	SUV3	P32580	737 aa		5.43	□□□□□ -1.54
UBX5	YDR330W	UTR2	P32623	467 aa		5.43	□□□□□ -1.54
UBX5	YDR330W	TBS1	P38114	1094 aa		5.43	□□□□□ -1.54
UBX5	YDR330W	SMC4	Q12267	1418 aa		5.43	□□□□□ -1.54
UBX5	YDR330W	TY1B-DR3	Q99231	1755 aa		5.43	□□□□□ -1.54
UBX5	YDR330W	MYO4	P32492	1471 aa		5.43	□□□□□ -1.54
UBX5	YDR330W	SPT2	P06843	333 aa	Predicted RBP	5.43	□□□□□ -1.54
UBX5	YDR330W	SWI5	P08153	709 aa		5.43	□□□□□ -1.54
UBX5	YDR330W	NAP1	P25293	417 aa	Known RBP	5.43	□□□□□ -1.54
UBX5	YDR330W	FBP26	P32604	452 aa		5.43	□□□□□ -1.54
UBX5	YDR330W	APP1	P53933	587 aa		5.43	□□□□□ -1.54
UBX5	YDR330W	ISU1	Q03020	165 aa		5.43	□□□□□ -1.54
UBX5	YDR330W	OYE2	Q03558	400 aa	Known RBP	5.43	□□□□□ -1.54
UBX5	YDR330W	SEC8	P32855	1065 aa		5.42	□□□□□ -1.54
UBX5	YDR330W	TRS120	Q04183	1289 aa		5.42	□□□□□ -1.54
UBX5	YDR330W	DAT1	P13483	248 aa	Known RBP	5.41	□□□□□ -1.54
UBX5	YDR330W	MKS1	P34072	584 aa		5.41	□□□□□ -1.54
UBX5	YDR330W	STB3	Q12427	513 aa		5.41	□□□□□ -1.54
UBX5	YDR330W	TY2B-B	Q12491	1770 aa		5.4	□□□□□ -1.54
UBX5	YDR330W	MET4	P32389	672 aa		5.4	□□□□□ -1.54
UBX5	YDR330W	ISC10	P32645	267 aa		5.4	□□□□□ -1.54
UBX5	YDR330W	YBR197C	P38306	217 aa		5.4	□□□□□ -1.54
UBX5	YDR330W	YJR107W	P47145	328 aa		5.4	□□□□□ -1.54
UBX5	YDR330W	FOX2	Q02207	900 aa	Known RBP	5.4	□□□□□ -1.54
UBX5	YDR330W	UFD2	P54860	961 aa		5.39	□□□□□ -1.55
UBX5	YDR330W	PUS5	Q06244	254 aa		5.39	□□□□□ -1.55
UBX5	YDR330W	BOI1	P38041	980 aa	Known RBP	5.38	□□□□□ -1.55
UBX5	YDR330W	BDP1	P46678	594 aa		5.38	□□□□□ -1.55
UBX5	YDR330W	CAB1	Q04430	367 aa		5.38	□□□□□ -1.55
UBX5	YDR330W	MET1	P36150	593 aa		5.38	□□□□□ -1.55
UBX5	YDR330W	JIP5	Q06214	492 aa	Predicted RBP	5.38	□□□□□ -1.55
UBX5	YDR330W	APC11	Q12157	165 aa		5.38	□□□□□ -1.55
UBX5	YDR330W	TY1B-H	O13535	1793 aa		5.37	□□□□□ -1.55
UBX5	YDR330W	TY1B-DR5	P0C2I2	1755 aa		5.37	□□□□□ -1.55

Retrieved 100 of 5,963 RNA–protein pairs in 16.7 ms