RNA–Protein interactions for RNA: ENST00000640900.1

SCARB2-225, Transcript of scavenger receptor class B member 2, humanhuman

TSL 2

Gene SCARB2, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-225ENST00000640900 CEP170BQ9Y4F5 1589 aaPredicted RBP13.25□□□□□ -0.29
SCARB2-225ENST00000640900 HOXD11P31277 338 aaPredicted RBP13.25□□□□□ -0.29
SCARB2-225ENST00000640900 ARHGAP23Q9P227 1491 aa13.24□□□□□ -0.29
SCARB2-225ENST00000640900 ZFYVE9O95405 1425 aa13.24□□□□□ -0.29
SCARB2-225ENST00000640900 RPGRIP1LQ68CZ1 1315 aa13.24□□□□□ -0.29
SCARB2-225ENST00000640900 STAC3Q96MF2 364 aa13.24□□□□□ -0.29
SCARB2-225ENST00000640900 SLIT1O75093 1534 aa13.23□□□□□ -0.29
SCARB2-225ENST00000640900 IFT172Q9UG01 1749 aa13.23□□□□□ -0.29
SCARB2-225ENST00000640900 NEUROD1Q13562 356 aa13.23□□□□□ -0.29
SCARB2-225ENST00000640900 L3MBTL2Q969R5 705 aa13.23□□□□□ -0.29
SCARB2-225ENST00000640900 NEXMIFQ5QGS0 1516 aa13.23□□□□□ -0.29
SCARB2-225ENST00000640900 NRXN1Q9ULB1 1477 aa13.23□□□□□ -0.29
SCARB2-225ENST00000640900 MYO5BQ9ULV0 1848 aa13.23□□□□□ -0.29
SCARB2-225ENST00000640900 UHRF1BP1Q6BDS2 1440 aa13.22□□□□□ -0.29
SCARB2-225ENST00000640900 TMEM2Q9UHN6 1383 aa13.21□□□□□ -0.29
SCARB2-225ENST00000640900 MYOM2P54296 1465 aa13.21□□□□□ -0.3
SCARB2-225ENST00000640900 PPLO60437 1756 aa13.2□□□□□ -0.3
SCARB2-225ENST00000640900 LMTK3Q96Q04 1460 aa13.2□□□□□ -0.3
SCARB2-225ENST00000640900 PPP1R15AO75807 674 aaPredicted RBP13.19□□□□□ -0.3
SCARB2-225ENST00000640900 THEMISQ8N1K5 641 aaPredicted RBP13.19□□□□□ -0.3
SCARB2-225ENST00000640900 TONSLQ96HA7 1378 aa13.19□□□□□ -0.3
SCARB2-225ENST00000640900 RIMS2Q9UQ26 1411 aa13.17□□□□□ -0.3
SCARB2-225ENST00000640900 RGL3Q3MIN7 710 aa13.17□□□□□ -0.3
SCARB2-225ENST00000640900 PRAG1Q86YV5 1406 aa13.16□□□□□ -0.3
SCARB2-225ENST00000640900 ZEB1P37275 1124 aaPredicted RBP13.16□□□□□ -0.3
SCARB2-225ENST00000640900 LTKP29376 864 aa13.15□□□□□ -0.3
SCARB2-225ENST00000640900 DCAF11Q8TEB1 546 aa13.15□□□□□ -0.3
SCARB2-225ENST00000640900 ADGRF5Q8IZF2 1346 aa13.14□□□□□ -0.31
SCARB2-225ENST00000640900 PIK3C2GO75747 1445 aa13.14□□□□□ -0.31
SCARB2-225ENST00000640900 VGFO15240 615 aaPredicted RBP13.14□□□□□ -0.31
SCARB2-225ENST00000640900 CHGAP10645 457 aaKnown RBP13.14□□□□□ -0.31
SCARB2-225ENST00000640900 NBPF8Q3BBV2 869 aa13.14□□□□□ -0.31
SCARB2-225ENST00000640900 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.14□□□□□ -0.31
SCARB2-225ENST00000640900 STAG3Q9UJ98 1225 aa13.14□□□□□ -0.31
SCARB2-225ENST00000640900 MED14O60244 1454 aa13.14□□□□□ -0.31
SCARB2-225ENST00000640900 SETBP1Q9Y6X0 1596 aa13.13□□□□□ -0.31
SCARB2-225ENST00000640900 SCAF11Q99590 1463 aaKnown RBP13.13□□□□□ -0.31
SCARB2-225ENST00000640900 PLEKHG1Q9ULL1 1385 aa13.12□□□□□ -0.31
SCARB2-225ENST00000640900 HDGFP51858 240 aaKnown RBP13.12□□□□□ -0.31
SCARB2-225ENST00000640900 ZNF326Q5BKZ1 582 aaKnown RBP13.12□□□□□ -0.31
SCARB2-225ENST00000640900 NRXN3Q9Y4C0 1643 aa13.12□□□□□ -0.31
SCARB2-225ENST00000640900 KIAA1210Q9ULL0 1709 aa13.11□□□□□ -0.31
SCARB2-225ENST00000640900 C14orf93Q9H972 538 aaKnown RBP13.11□□□□□ -0.31
SCARB2-225ENST00000640900 GPRASP1Q5JY77 1395 aa13.1□□□□□ -0.31
SCARB2-225ENST00000640900 TXNDC2Q86VQ3 553 aa13.1□□□□□ -0.31
SCARB2-225ENST00000640900 ADAMTS13Q76LX8 1427 aa13.1□□□□□ -0.31
SCARB2-225ENST00000640900 RALGAPBQ86X10 1494 aa13.1□□□□□ -0.31
SCARB2-225ENST00000640900 SETD1AO15047 1707 aaKnown RBP13.09□□□□□ -0.31
SCARB2-225ENST00000640900 ANKLE2Q86XL3 938 aa13.09□□□□□ -0.31
SCARB2-225ENST00000640900 KDM2AQ9Y2K7 1162 aa13.09□□□□□ -0.31
SCARB2-225ENST00000640900 TRPM1Q7Z4N2 1603 aa13.09□□□□□ -0.31
SCARB2-225ENST00000640900 STRCQ7RTU9 1775 aa13.08□□□□□ -0.32
SCARB2-225ENST00000640900 EID1Q9Y6B2 187 aa13.08□□□□□ -0.32
SCARB2-225ENST00000640900 ADGRB1O14514 1584 aa13.07□□□□□ -0.32
SCARB2-225ENST00000640900 ALKQ9UM73 1620 aa13.07□□□□□ -0.32
SCARB2-225ENST00000640900 NUTM2DQ5VT03 806 aaPredicted RBP13.07□□□□□ -0.32
SCARB2-225ENST00000640900 POLR1AO95602 1720 aaPredicted RBP13.07□□□□□ -0.32
SCARB2-225ENST00000640900 LAMC1P11047 1609 aa13.06□□□□□ -0.32
SCARB2-225ENST00000640900 HSPA2P54652 639 aa13.06□□□□□ -0.32
SCARB2-225ENST00000640900 TBX22Q9Y458 520 aa13.06□□□□□ -0.32
SCARB2-225ENST00000640900 ASXL1Q8IXJ9 1541 aa13.06□□□□□ -0.32
SCARB2-225ENST00000640900 DIP2AQ14689 1571 aa13.06□□□□□ -0.32
SCARB2-225ENST00000640900 IQGAP1P46940 1657 aa13.05□□□□□ -0.32
SCARB2-225ENST00000640900 NPHP4O75161 1426 aaPredicted RBP13.05□□□□□ -0.32
SCARB2-225ENST00000640900 CFAP70Q5T0N1 1121 aa13.04□□□□□ -0.32
SCARB2-225ENST00000640900 NCKAP5LQ9HCH0 1330 aa13.04□□□□□ -0.32
SCARB2-225ENST00000640900 NBPF1Q3BBV0 1214 aa13.03□□□□□ -0.32
SCARB2-225ENST00000640900 PIK3R4Q99570 1358 aa13.03□□□□□ -0.32
SCARB2-225ENST00000640900 METP08581 1390 aa13.02□□□□□ -0.33
SCARB2-225ENST00000640900 TECPR2O15040 1411 aa13.01□□□□□ -0.33
SCARB2-225ENST00000640900 ABCC11Q96J66 1382 aa13□□□□□ -0.33
SCARB2-225ENST00000640900 PTPRUQ92729 1446 aa12.99□□□□□ -0.33
SCARB2-225ENST00000640900 ROCK2O75116 1388 aaKnown RBP12.99□□□□□ -0.33
SCARB2-225ENST00000640900 LRPPRCP42704 1394 aaKnown RBP12.99□□□□□ -0.33
SCARB2-225ENST00000640900 YTHDC2Q9H6S0 1430 aaKnown RBP12.98□□□□□ -0.33
SCARB2-225ENST00000640900 SIRT1Q96EB6 747 aa12.98□□□□□ -0.33
SCARB2-225ENST00000640900 SLC26A8Q96RN1 970 aa12.98□□□□□ -0.33
SCARB2-225ENST00000640900 DLC1Q96QB1 1528 aa12.98□□□□□ -0.33
SCARB2-225ENST00000640900 XRN1Q8IZH2 1706 aaKnown RBP12.97□□□□□ -0.33
SCARB2-225ENST00000640900 TMEM132EQ6IEE7 984 aa12.97□□□□□ -0.33
SCARB2-225ENST00000640900 NWD1Q149M9 1564 aa12.97□□□□□ -0.33
SCARB2-225ENST00000640900 CHD2O14647 1828 aaKnown RBP12.97□□□□□ -0.33
SCARB2-225ENST00000640900 KNDC1Q76NI1 1749 aa12.96□□□□□ -0.33
SCARB2-225ENST00000640900 CPS1P31327 1500 aa12.95□□□□□ -0.34
SCARB2-225ENST00000640900 CARD11Q9BXL7 1154 aa12.95□□□□□ -0.34
SCARB2-225ENST00000640900 PTCH1Q13635 1447 aa12.95□□□□□ -0.34
SCARB2-225ENST00000640900 FAM135BQ49AJ0 1406 aa12.95□□□□□ -0.34
SCARB2-225ENST00000640900 USP47Q96K76 1375 aa12.94□□□□□ -0.34
SCARB2-225ENST00000640900 KCNA6P17658 529 aa12.93□□□□□ -0.34
SCARB2-225ENST00000640900 ARHGEF28Q8N1W1 1705 aaKnown RBP12.93□□□□□ -0.34
SCARB2-225ENST00000640900 SBNO2Q9Y2G9 1366 aa12.93□□□□□ -0.34
SCARB2-225ENST00000640900 ROBO2Q9HCK4 1378 aa12.92□□□□□ -0.34
SCARB2-225ENST00000640900 BCANQ96GW7 911 aa12.91□□□□□ -0.34
SCARB2-225ENST00000640900 TESK2Q96S53 571 aa12.91□□□□□ -0.34
SCARB2-225ENST00000640900 AMOTL2Q9Y2J4 779 aa12.91□□□□□ -0.34
SCARB2-225ENST00000640900 STRCP1A6NGW2 1772 aa12.91□□□□□ -0.34
SCARB2-225ENST00000640900 NKTRP30414 1462 aaKnown RBP12.91□□□□□ -0.34
SCARB2-225ENST00000640900 EIF4G2P78344 907 aaKnown RBP eCLIP12.9□□□□□ -0.34
SCARB2-225ENST00000640900 HSPA5P11021 654 aaKnown RBP12.89□□□□□ -0.35
SCARB2-225ENST00000640900 TRAK1Q9UPV9 953 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms