RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 MYO5BQ9ULV0 1848 aa27.16■■□□□ 1.94
CLN3-259ENST00000637551 EID1Q9Y6B2 187 aa27.15■■□□□ 1.94
CLN3-259ENST00000637551 KIF1BO60333 1816 aa27.15■■□□□ 1.94
CLN3-259ENST00000637551 CLTCL1P53675 1640 aa27.15■■□□□ 1.94
CLN3-259ENST00000637551 ZFYVE9O95405 1425 aa27.15■■□□□ 1.94
CLN3-259ENST00000637551 HDGFP51858 240 aaKnown RBP27.14■■□□□ 1.94
CLN3-259ENST00000637551 MPHOSPH9Q99550 1183 aa27.13■■□□□ 1.93
CLN3-259ENST00000637551 PIP4K2BP78356 416 aa27.1■■□□□ 1.93
CLN3-259ENST00000637551 SCAF1Q9H7N4 1312 aaKnown RBP27.1■■□□□ 1.93
CLN3-259ENST00000637551 TOM1O60784 492 aa27.09■■□□□ 1.93
CLN3-259ENST00000637551 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.09■■□□□ 1.93
CLN3-259ENST00000637551 TXNDC2Q86VQ3 553 aa27.08■■□□□ 1.93
CLN3-259ENST00000637551 RIMS2Q9UQ26 1411 aa27.06■■□□□ 1.92
CLN3-259ENST00000637551 LTKP29376 864 aa27.05■■□□□ 1.92
CLN3-259ENST00000637551 CCDC144AA2RUR9 1427 aa27.05■■□□□ 1.92
CLN3-259ENST00000637551 PLEKHG1Q9ULL1 1385 aa27.04■■□□□ 1.92
CLN3-259ENST00000637551 CPS1P31327 1500 aa27.04■■□□□ 1.92
CLN3-259ENST00000637551 DIP2AQ14689 1571 aa27.03■■□□□ 1.92
CLN3-259ENST00000637551 TRIM26Q12899 539 aaPredicted RBP27■■□□□ 1.91
CLN3-259ENST00000637551 PHF23Q9BUL5 403 aaPredicted RBP26.99■■□□□ 1.91
CLN3-259ENST00000637551 RPGRIP1LQ68CZ1 1315 aa26.98■■□□□ 1.91
CLN3-259ENST00000637551 NEXMIFQ5QGS0 1516 aa26.98■■□□□ 1.91
CLN3-259ENST00000637551 SETBP1Q9Y6X0 1596 aa26.96■■□□□ 1.91
CLN3-259ENST00000637551 CHGAP10645 457 aaKnown RBP26.95■■□□□ 1.9
CLN3-259ENST00000637551 SPATA31E1Q6ZUB1 1445 aa26.94■■□□□ 1.9
CLN3-259ENST00000637551 PIK3R4Q99570 1358 aa26.93■■□□□ 1.9
CLN3-259ENST00000637551 ANKRD30BQ9BXX2 1392 aa26.93■■□□□ 1.9
CLN3-259ENST00000637551 PPLO60437 1756 aa26.92■■□□□ 1.9
CLN3-259ENST00000637551 ALKQ9UM73 1620 aa26.92■■□□□ 1.9
CLN3-259ENST00000637551 PPP1R15AO75807 674 aaPredicted RBP26.92■■□□□ 1.9
CLN3-259ENST00000637551 NWD1Q149M9 1564 aa26.92■■□□□ 1.9
CLN3-259ENST00000637551 IFT172Q9UG01 1749 aa26.89■■□□□ 1.9
CLN3-259ENST00000637551 NKTRP30414 1462 aaKnown RBP26.88■■□□□ 1.89
CLN3-259ENST00000637551 FOXD1Q16676 465 aa26.88■■□□□ 1.89
CLN3-259ENST00000637551 TBX22Q9Y458 520 aa26.88■■□□□ 1.89
CLN3-259ENST00000637551 ZNF326Q5BKZ1 582 aaKnown RBP26.87■■□□□ 1.89
CLN3-259ENST00000637551 ADAMTS13Q76LX8 1427 aa26.87■■□□□ 1.89
CLN3-259ENST00000637551 VGFO15240 615 aaPredicted RBP26.86■■□□□ 1.89
CLN3-259ENST00000637551 NRXN3Q9Y4C0 1643 aa26.86■■□□□ 1.89
CLN3-259ENST00000637551 CHD2O14647 1828 aaKnown RBP26.86■■□□□ 1.89
CLN3-259ENST00000637551 STRCP1A6NGW2 1772 aa26.85■■□□□ 1.89
CLN3-259ENST00000637551 STAC3Q96MF2 364 aa26.81■■□□□ 1.88
CLN3-259ENST00000637551 KCNA6P17658 529 aa26.8■■□□□ 1.88
CLN3-259ENST00000637551 MYOM2P54296 1465 aa26.8■■□□□ 1.88
CLN3-259ENST00000637551 LRRC7Q96NW7 1537 aa26.78■■□□□ 1.88
CLN3-259ENST00000637551 RGS17Q9UGC6 210 aaPredicted RBP26.77■■□□□ 1.88
CLN3-259ENST00000637551 SETD1AO15047 1707 aaKnown RBP26.76■■□□□ 1.88
CLN3-259ENST00000637551 PRAG1Q86YV5 1406 aa26.76■■□□□ 1.87
CLN3-259ENST00000637551 NCOA3Q9Y6Q9 1424 aa26.76■■□□□ 1.87
CLN3-259ENST00000637551 SLC26A8Q96RN1 970 aa26.76■■□□□ 1.87
CLN3-259ENST00000637551 BCANQ96GW7 911 aa26.75■■□□□ 1.87
CLN3-259ENST00000637551 NRXN1Q9ULB1 1477 aa26.74■■□□□ 1.87
CLN3-259ENST00000637551 XRN1Q8IZH2 1706 aaKnown RBP26.73■■□□□ 1.87
CLN3-259ENST00000637551 LAMC1P11047 1609 aa26.73■■□□□ 1.87
CLN3-259ENST00000637551 SENP3Q9H4L4 574 aaPredicted RBP26.72■■□□□ 1.87
CLN3-259ENST00000637551 PIK3C2GO75747 1445 aa26.72■■□□□ 1.87
CLN3-259ENST00000637551 XIRP1Q702N8 1843 aaKnown RBP26.7■■□□□ 1.87
CLN3-259ENST00000637551 NUTM2DQ5VT03 806 aaPredicted RBP26.68■■□□□ 1.86
CLN3-259ENST00000637551 DHX57Q6P158 1386 aaKnown RBP26.66■■□□□ 1.86
CLN3-259ENST00000637551 RGL3Q3MIN7 710 aa26.65■■□□□ 1.86
CLN3-259ENST00000637551 PTCH1Q13635 1447 aa26.64■■□□□ 1.85
CLN3-259ENST00000637551 METP08581 1390 aa26.62■■□□□ 1.85
CLN3-259ENST00000637551 PTPRUQ92729 1446 aa26.62■■□□□ 1.85
CLN3-259ENST00000637551 TMEM94Q12767 1356 aa26.61■■□□□ 1.85
CLN3-259ENST00000637551 ADGRF5Q8IZF2 1346 aa26.61■■□□□ 1.85
CLN3-259ENST00000637551 KNDC1Q76NI1 1749 aa26.59■■□□□ 1.85
CLN3-259ENST00000637551 TECPR2O15040 1411 aa26.58■■□□□ 1.85
CLN3-259ENST00000637551 PROSER2Q86WR7 435 aaPredicted RBP26.58■■□□□ 1.85
CLN3-259ENST00000637551 AMOTL2Q9Y2J4 779 aa26.58■■□□□ 1.85
CLN3-259ENST00000637551 DCCP43146 1447 aa26.57■■□□□ 1.84
CLN3-259ENST00000637551 POTEAQ6S8J7 498 aa26.55■■□□□ 1.84
CLN3-259ENST00000637551 KIAA1210Q9ULL0 1709 aa26.55■■□□□ 1.84
CLN3-259ENST00000637551 C14orf93Q9H972 538 aaKnown RBP26.54■■□□□ 1.84
CLN3-259ENST00000637551 MSH6P52701 1360 aa26.54■■□□□ 1.84
CLN3-259ENST00000637551 ASXL1Q8IXJ9 1541 aa26.52■■□□□ 1.84
CLN3-259ENST00000637551 LRPPRCP42704 1394 aaKnown RBP26.51■■□□□ 1.83
CLN3-259ENST00000637551 ABCC11Q96J66 1382 aa26.51■■□□□ 1.83
CLN3-259ENST00000637551 CLSPNQ9HAW4 1339 aa26.49■■□□□ 1.83
CLN3-259ENST00000637551 DCAF11Q8TEB1 546 aa26.49■■□□□ 1.83
CLN3-259ENST00000637551 FAM135BQ49AJ0 1406 aa26.48■■□□□ 1.83
CLN3-259ENST00000637551 ADGRL3Q9HAR2 1447 aa26.48■■□□□ 1.83
CLN3-259ENST00000637551 ADGRB1O14514 1584 aa26.47■■□□□ 1.83
CLN3-259ENST00000637551 SIRT1Q96EB6 747 aa26.47■■□□□ 1.83
CLN3-259ENST00000637551 C19orf44Q9H6X5 657 aa26.47■■□□□ 1.83
CLN3-259ENST00000637551 DLC1Q96QB1 1528 aa26.47■■□□□ 1.83
CLN3-259ENST00000637551 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.47■■□□□ 1.83
CLN3-259ENST00000637551 YTHDC2Q9H6S0 1430 aaKnown RBP26.46■■□□□ 1.83
CLN3-259ENST00000637551 NALCNQ8IZF0 1738 aa26.43■■□□□ 1.82
CLN3-259ENST00000637551 CADPS2Q86UW7 1296 aa26.43■■□□□ 1.82
CLN3-259ENST00000637551 ROBO2Q9HCK4 1378 aa26.43■■□□□ 1.82
CLN3-259ENST00000637551 CDC42BPGQ6DT37 1551 aa26.39■■□□□ 1.82
CLN3-259ENST00000637551 PCGF6Q9BYE7 350 aa26.39■■□□□ 1.82
CLN3-259ENST00000637551 CFAP70Q5T0N1 1121 aa26.38■■□□□ 1.81
CLN3-259ENST00000637551 C14orf37Q86TY3 774 aa26.36■■□□□ 1.81
CLN3-259ENST00000637551 ATF3P18847 181 aa26.35■■□□□ 1.81
CLN3-259ENST00000637551 KDM2AQ9Y2K7 1162 aa26.35■■□□□ 1.81
CLN3-259ENST00000637551 L3MBTL2Q969R5 705 aa26.34■■□□□ 1.81
CLN3-259ENST00000637551 SIN3AQ96ST3 1273 aa26.34■■□□□ 1.81
CLN3-259ENST00000637551 ROBO1Q9Y6N7 1651 aa26.33■■□□□ 1.81
CLN3-259ENST00000637551 SLAIN2Q9P270 581 aa26.32■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms