RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 IGF1RP08069 1367 aa14.06□□□□□ -0.16
CLIP1-219ENST00000620786 SF3A1Q15459 793 aaKnown RBP14.05□□□□□ -0.16
CLIP1-219ENST00000620786 RBM33Q96EV2 1170 aaKnown RBP14.05□□□□□ -0.16
CLIP1-219ENST00000620786 CWC22Q9HCG8 908 aaKnown RBP14.05□□□□□ -0.16
CLIP1-219ENST00000620786 RIPK4P57078 832 aa14.05□□□□□ -0.16
CLIP1-219ENST00000620786 H3BQV1 296 aa14.05□□□□□ -0.16
CLIP1-219ENST00000620786 IFFO2Q5TF58 517 aa14.05□□□□□ -0.16
CLIP1-219ENST00000620786 MIA2Q96PC5 1412 aa14.05□□□□□ -0.16
CLIP1-219ENST00000620786 ZNF644Q9H582 1327 aaPredicted RBP14.05□□□□□ -0.16
CLIP1-219ENST00000620786 DIAPH3Q9NSV4 1193 aa14.04□□□□□ -0.16
CLIP1-219ENST00000620786 PROSER2Q86WR7 435 aaPredicted RBP14.04□□□□□ -0.16
CLIP1-219ENST00000620786 GRIN2BQ13224 1484 aa14.04□□□□□ -0.16
CLIP1-219ENST00000620786 ESCO1Q5FWF5 840 aa14.03□□□□□ -0.16
CLIP1-219ENST00000620786 GPRASP1Q5JY77 1395 aa14.03□□□□□ -0.16
CLIP1-219ENST00000620786 APPP05067 770 aa14.03□□□□□ -0.16
CLIP1-219ENST00000620786 CABP2Q9NPB3 220 aa14.03□□□□□ -0.16
CLIP1-219ENST00000620786 IFIT2P09913 472 aaKnown RBP14.03□□□□□ -0.16
CLIP1-219ENST00000620786 FOXD4L5Q5VV16 416 aaPredicted RBP14.03□□□□□ -0.16
CLIP1-219ENST00000620786 FAM184AQ8NB25 1140 aa14.03□□□□□ -0.16
CLIP1-219ENST00000620786 FOXD4L4Q8WXT5 416 aaPredicted RBP14.03□□□□□ -0.16
CLIP1-219ENST00000620786 TSPYL4Q9UJ04 414 aa14.03□□□□□ -0.16
CLIP1-219ENST00000620786 PRG4Q92954 1404 aaPredicted RBP14.03□□□□□ -0.16
CLIP1-219ENST00000620786 TXNDC2Q86VQ3 553 aa14.02□□□□□ -0.16
CLIP1-219ENST00000620786 FKBP5Q13451 457 aaPredicted RBP14.02□□□□□ -0.17
CLIP1-219ENST00000620786 DHX16O60231 1041 aaKnown RBP14.02□□□□□ -0.17
CLIP1-219ENST00000620786 HMOX1P09601 288 aa14.01□□□□□ -0.17
CLIP1-219ENST00000620786 NLRP6P59044 892 aa14.01□□□□□ -0.17
CLIP1-219ENST00000620786 USP35Q9P2H5 1018 aa14.01□□□□□ -0.17
CLIP1-219ENST00000620786 SYNJ2O15056 1496 aa14.01□□□□□ -0.17
CLIP1-219ENST00000620786 APAF1O14727 1248 aa14□□□□□ -0.17
CLIP1-219ENST00000620786 G3BP1Q13283 466 aaKnown RBP eCLIP14□□□□□ -0.17
CLIP1-219ENST00000620786 TMEM132EQ6IEE7 984 aa14□□□□□ -0.17
CLIP1-219ENST00000620786 CEP89Q96ST8 783 aa14□□□□□ -0.17
CLIP1-219ENST00000620786 RIC3Q7Z5B4 369 aa14□□□□□ -0.17
CLIP1-219ENST00000620786 CHMP4CQ96CF2 233 aa14□□□□□ -0.17
CLIP1-219ENST00000620786 MRC2Q9UBG0 1479 aa14□□□□□ -0.17
CLIP1-219ENST00000620786 AIMP1Q12904 312 aaKnown RBP13.99□□□□□ -0.17
CLIP1-219ENST00000620786 PES1O00541 588 aaKnown RBP13.99□□□□□ -0.17
CLIP1-219ENST00000620786 TPD52L1Q16890 204 aaPredicted RBP13.99□□□□□ -0.17
CLIP1-219ENST00000620786 ABTB2Q8N961 1025 aa13.99□□□□□ -0.17
CLIP1-219ENST00000620786 RUFY2Q8WXA3 655 aa13.99□□□□□ -0.17
CLIP1-219ENST00000620786 GGNBP2Q9H3C7 697 aa13.99□□□□□ -0.17
CLIP1-219ENST00000620786 AFAP1Q8N556 730 aa13.99□□□□□ -0.17
CLIP1-219ENST00000620786 STRN4Q9NRL3 753 aa13.98□□□□□ -0.17
CLIP1-219ENST00000620786 PLIN1O60240 522 aa13.98□□□□□ -0.17
CLIP1-219ENST00000620786 API5Q9BZZ5 524 aaKnown RBP13.98□□□□□ -0.17
CLIP1-219ENST00000620786 ROCK1Q13464 1354 aa13.98□□□□□ -0.17
CLIP1-219ENST00000620786 NUTM2BA6NNL0 878 aaPredicted RBP13.98□□□□□ -0.17
CLIP1-219ENST00000620786 NUTM2EB1AL46 878 aaPredicted RBP13.98□□□□□ -0.17
CLIP1-219ENST00000620786 NUTM2AQ8IVF1 878 aaPredicted RBP13.98□□□□□ -0.17
CLIP1-219ENST00000620786 FGD6Q6ZV73 1430 aa13.98□□□□□ -0.17
CLIP1-219ENST00000620786 SF3B2Q13435 895 aaKnown RBP13.98□□□□□ -0.17
CLIP1-219ENST00000620786 ANO8Q9HCE9 1232 aaPredicted RBP13.98□□□□□ -0.17
CLIP1-219ENST00000620786 SAMD1Q6SPF0 538 aaPredicted RBP13.97□□□□□ -0.17
CLIP1-219ENST00000620786 TRIM29Q14134 588 aa13.97□□□□□ -0.17
CLIP1-219ENST00000620786 ANKRD50Q9ULJ7 1429 aa13.97□□□□□ -0.17
CLIP1-219ENST00000620786 RUNDC1Q96C34 613 aa13.97□□□□□ -0.17
CLIP1-219ENST00000620786 COG6Q9Y2V7 657 aa13.97□□□□□ -0.17
CLIP1-219ENST00000620786 NCAPD3P42695 1498 aa13.96□□□□□ -0.17
CLIP1-219ENST00000620786 ANO2Q9NQ90 1003 aa13.96□□□□□ -0.17
CLIP1-219ENST00000620786 RBM19Q9Y4C8 960 aaKnown RBP13.96□□□□□ -0.17
CLIP1-219ENST00000620786 MCTP1Q6DN14 999 aa13.96□□□□□ -0.17
CLIP1-219ENST00000620786 WASHC2AQ641Q2 1341 aa13.96□□□□□ -0.17
CLIP1-219ENST00000620786 CPLX2Q6PUV4 134 aaKnown RBP13.96□□□□□ -0.18
CLIP1-219ENST00000620786 GNAI1P63096 354 aa13.96□□□□□ -0.18
CLIP1-219ENST00000620786 STAC3Q96MF2 364 aa13.95□□□□□ -0.18
CLIP1-219ENST00000620786 RBM42Q9BTD8 480 aaKnown RBP13.95□□□□□ -0.18
CLIP1-219ENST00000620786 THEMISQ8N1K5 641 aaPredicted RBP13.95□□□□□ -0.18
CLIP1-219ENST00000620786 DDX19BQ9UMR2 479 aa13.95□□□□□ -0.18
CLIP1-219ENST00000620786 CENPQQ7L2Z9 268 aaPredicted RBP13.95□□□□□ -0.18
CLIP1-219ENST00000620786 RRBP1Q9P2E9 1410 aaKnown RBP13.95□□□□□ -0.18
CLIP1-219ENST00000620786 TRDNQ13061 729 aa13.94□□□□□ -0.18
CLIP1-219ENST00000620786 NFXL1Q6ZNB6 911 aa13.94□□□□□ -0.18
CLIP1-219ENST00000620786 SMG6Q86US8 1419 aaKnown RBP13.94□□□□□ -0.18
CLIP1-219ENST00000620786 FYCO1Q9BQS8 1478 aa13.94□□□□□ -0.18
CLIP1-219ENST00000620786 ERICH2A1L162 156 aa13.94□□□□□ -0.18
CLIP1-219ENST00000620786 A0A0U1RQG5 324 aaPredicted RBP13.94□□□□□ -0.18
CLIP1-219ENST00000620786 FYB1O15117 783 aa13.94□□□□□ -0.18
CLIP1-219ENST00000620786 PHF14O94880 888 aa13.94□□□□□ -0.18
CLIP1-219ENST00000620786 FAM177BA6PVY3 158 aa13.94□□□□□ -0.18
CLIP1-219ENST00000620786 CCDC27Q2M243 656 aa13.94□□□□□ -0.18
CLIP1-219ENST00000620786 IFT140Q96RY7 1462 aa13.94□□□□□ -0.18
CLIP1-219ENST00000620786 PPP1R1BQ9UD71 204 aaPredicted RBP13.94□□□□□ -0.18
CLIP1-219ENST00000620786 PRKRIP1Q9H875 184 aaPredicted RBP13.94□□□□□ -0.18
CLIP1-219ENST00000620786 TPM2P07951 284 aa13.93□□□□□ -0.18
CLIP1-219ENST00000620786 ZKSCAN1P17029 563 aaPredicted RBP13.93□□□□□ -0.18
CLIP1-219ENST00000620786 PIP4K2BP78356 416 aa13.93□□□□□ -0.18
CLIP1-219ENST00000620786 NEUROD6Q96NK8 337 aa13.93□□□□□ -0.18
CLIP1-219ENST00000620786 CRBNQ96SW2 442 aa13.93□□□□□ -0.18
CLIP1-219ENST00000620786 TPM3P06753 285 aa13.93□□□□□ -0.18
CLIP1-219ENST00000620786 KIF6Q6ZMV9 814 aa13.93□□□□□ -0.18
CLIP1-219ENST00000620786 NCOA2Q15596 1464 aa13.92□□□□□ -0.18
CLIP1-219ENST00000620786 CPLX1O14810 134 aa13.92□□□□□ -0.18
CLIP1-219ENST00000620786 DZIP1LQ8IYY4 767 aaKnown RBP13.92□□□□□ -0.18
CLIP1-219ENST00000620786 NESP48681 1621 aa13.91□□□□□ -0.18
CLIP1-219ENST00000620786 RRP1P56182 461 aaKnown RBP13.91□□□□□ -0.18
CLIP1-219ENST00000620786 WWC1Q8IX03 1113 aa13.91□□□□□ -0.18
CLIP1-219ENST00000620786 FOXD4L6Q3SYB3 417 aaPredicted RBP13.91□□□□□ -0.18
CLIP1-219ENST00000620786 PLEKHO1Q53GL0 409 aaPredicted RBP13.91□□□□□ -0.18
CLIP1-219ENST00000620786 FOXD4L3Q6VB84 417 aaPredicted RBP13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms