RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	ZFYVE9	O95405	1425 aa		13.7	□□□□□ -0.22
DNMT1-223	ENST00000591239	RIMS2	Q9UQ26	1411 aa		13.69	□□□□□ -0.22
DNMT1-223	ENST00000591239	PPP1R15A	O75807	674 aa	Predicted RBP	13.68	□□□□□ -0.22
DNMT1-223	ENST00000591239	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.68	□□□□□ -0.22
DNMT1-223	ENST00000591239	MPHOSPH9	Q99550	1183 aa		13.68	□□□□□ -0.22
DNMT1-223	ENST00000591239	TRPM2	O94759	1503 aa		13.68	□□□□□ -0.22
DNMT1-223	ENST00000591239	RAB3GAP2	Q9H2M9	1393 aa		13.68	□□□□□ -0.22
DNMT1-223	ENST00000591239	IQSEC2	Q5JU85	1478 aa		13.67	□□□□□ -0.22
DNMT1-223	ENST00000591239	BCAN	Q96GW7	911 aa		13.67	□□□□□ -0.22
DNMT1-223	ENST00000591239	CPS1	P31327	1500 aa		13.66	□□□□□ -0.22
DNMT1-223	ENST00000591239	CLTCL1	P53675	1640 aa		13.66	□□□□□ -0.22
DNMT1-223	ENST00000591239	SLC26A8	Q96RN1	970 aa		13.66	□□□□□ -0.22
DNMT1-223	ENST00000591239	ZNF326	Q5BKZ1	582 aa	Known RBP	13.65	□□□□□ -0.22
DNMT1-223	ENST00000591239	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.65	□□□□□ -0.22
DNMT1-223	ENST00000591239	PLEKHG1	Q9ULL1	1385 aa		13.65	□□□□□ -0.22
DNMT1-223	ENST00000591239	STRCP1	A6NGW2	1772 aa		13.63	□□□□□ -0.23
DNMT1-223	ENST00000591239	HRC	P23327	699 aa		13.62	□□□□□ -0.23
DNMT1-223	ENST00000591239	KIF1B	O60333	1816 aa		13.61	□□□□□ -0.23
DNMT1-223	ENST00000591239	LRRC7	Q96NW7	1537 aa		13.6	□□□□□ -0.23
DNMT1-223	ENST00000591239	UBAP1L	F5GYI3	381 aa		13.6	□□□□□ -0.23
DNMT1-223	ENST00000591239	KCNA6	P17658	529 aa		13.6	□□□□□ -0.23
DNMT1-223	ENST00000591239	TBX22	Q9Y458	520 aa		13.6	□□□□□ -0.23
DNMT1-223	ENST00000591239	CCDC144A	A2RUR9	1427 aa		13.59	□□□□□ -0.23
DNMT1-223	ENST00000591239	ADAMTS13	Q76LX8	1427 aa		13.58	□□□□□ -0.24
DNMT1-223	ENST00000591239	NEXMIF	Q5QGS0	1516 aa		13.58	□□□□□ -0.24
DNMT1-223	ENST00000591239	RPGRIP1L	Q68CZ1	1315 aa		13.57	□□□□□ -0.24
DNMT1-223	ENST00000591239	VGF	O15240	615 aa	Predicted RBP	13.56	□□□□□ -0.24
DNMT1-223	ENST00000591239	TOM1	O60784	492 aa		13.56	□□□□□ -0.24
DNMT1-223	ENST00000591239	PROSER2	Q86WR7	435 aa	Predicted RBP	13.56	□□□□□ -0.24
DNMT1-223	ENST00000591239	DIP2A	Q14689	1571 aa		13.56	□□□□□ -0.24
DNMT1-223	ENST00000591239	RGL3	Q3MIN7	710 aa		13.55	□□□□□ -0.24
DNMT1-223	ENST00000591239	NWD1	Q149M9	1564 aa		13.54	□□□□□ -0.24
DNMT1-223	ENST00000591239	SETBP1	Q9Y6X0	1596 aa		13.54	□□□□□ -0.24
DNMT1-223	ENST00000591239	CHD2	O14647	1828 aa	Known RBP	13.54	□□□□□ -0.24
DNMT1-223	ENST00000591239	TMEM94	Q12767	1356 aa		13.54	□□□□□ -0.24
DNMT1-223	ENST00000591239	PIK3R4	Q99570	1358 aa		13.54	□□□□□ -0.24
DNMT1-223	ENST00000591239	SPATA31E1	Q6ZUB1	1445 aa		13.54	□□□□□ -0.24
DNMT1-223	ENST00000591239	NKTR	P30414	1462 aa	Known RBP	13.54	□□□□□ -0.24
DNMT1-223	ENST00000591239	NRXN3	Q9Y4C0	1643 aa		13.53	□□□□□ -0.24
DNMT1-223	ENST00000591239	PIP4K2B	P78356	416 aa		13.53	□□□□□ -0.24
DNMT1-223	ENST00000591239	RBM33	Q96EV2	1170 aa	Known RBP	13.53	□□□□□ -0.24
DNMT1-223	ENST00000591239	SCAF1	Q9H7N4	1312 aa	Known RBP	13.52	□□□□□ -0.25
DNMT1-223	ENST00000591239	ANKRD30B	Q9BXX2	1392 aa		13.52	□□□□□ -0.25
DNMT1-223	ENST00000591239	XIRP1	Q702N8	1843 aa	Known RBP	13.52	□□□□□ -0.25
DNMT1-223	ENST00000591239	MET	P08581	1390 aa		13.51	□□□□□ -0.25
DNMT1-223	ENST00000591239	AMOTL2	Q9Y2J4	779 aa		13.51	□□□□□ -0.25
DNMT1-223	ENST00000591239	PPL	O60437	1756 aa		13.5	□□□□□ -0.25
DNMT1-223	ENST00000591239	PTPRU	Q92729	1446 aa		13.5	□□□□□ -0.25
DNMT1-223	ENST00000591239	ALK	Q9UM73	1620 aa		13.5	□□□□□ -0.25
DNMT1-223	ENST00000591239	ADGRF5	Q8IZF2	1346 aa		13.48	□□□□□ -0.25
DNMT1-223	ENST00000591239	NCOA3	Q9Y6Q9	1424 aa		13.47	□□□□□ -0.25
DNMT1-223	ENST00000591239	MSH6	P52701	1360 aa		13.46	□□□□□ -0.25
DNMT1-223	ENST00000591239	TRIM26	Q12899	539 aa	Predicted RBP	13.46	□□□□□ -0.25
DNMT1-223	ENST00000591239	XRN1	Q8IZH2	1706 aa	Known RBP	13.45	□□□□□ -0.26
DNMT1-223	ENST00000591239	IFT172	Q9UG01	1749 aa		13.45	□□□□□ -0.26
DNMT1-223	ENST00000591239	C14orf37	Q86TY3	774 aa		13.45	□□□□□ -0.26
DNMT1-223	ENST00000591239	HSPA1L	P34931	641 aa		13.44	□□□□□ -0.26
DNMT1-223	ENST00000591239	C19orf44	Q9H6X5	657 aa		13.44	□□□□□ -0.26
DNMT1-223	ENST00000591239	SETD1A	O15047	1707 aa	Known RBP	13.44	□□□□□ -0.26
DNMT1-223	ENST00000591239	PIK3C2G	O75747	1445 aa		13.42	□□□□□ -0.26
DNMT1-223	ENST00000591239	SLAIN2	Q9P270	581 aa		13.42	□□□□□ -0.26
DNMT1-223	ENST00000591239	ATF3	P18847	181 aa		13.41	□□□□□ -0.26
DNMT1-223	ENST00000591239	MYOM2	P54296	1465 aa		13.41	□□□□□ -0.26
DNMT1-223	ENST00000591239	FAM135B	Q49AJ0	1406 aa		13.4	□□□□□ -0.26
DNMT1-223	ENST00000591239	CADPS2	Q86UW7	1296 aa		13.4	□□□□□ -0.26
DNMT1-223	ENST00000591239	DCAF11	Q8TEB1	546 aa		13.4	□□□□□ -0.26
DNMT1-223	ENST00000591239	ROBO2	Q9HCK4	1378 aa		13.4	□□□□□ -0.26
DNMT1-223	ENST00000591239	NRXN1	Q9ULB1	1477 aa		13.4	□□□□□ -0.26
DNMT1-223	ENST00000591239	PTCH1	Q13635	1447 aa		13.39	□□□□□ -0.27
DNMT1-223	ENST00000591239	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.39	□□□□□ -0.27
DNMT1-223	ENST00000591239	TMEM132E	Q6IEE7	984 aa		13.39	□□□□□ -0.27
DNMT1-223	ENST00000591239	STAC3	Q96MF2	364 aa		13.39	□□□□□ -0.27
DNMT1-223	ENST00000591239	C14orf93	Q9H972	538 aa	Known RBP	13.39	□□□□□ -0.27
DNMT1-223	ENST00000591239	KDM2A	Q9Y2K7	1162 aa		13.39	□□□□□ -0.27
DNMT1-223	ENST00000591239	PRAG1	Q86YV5	1406 aa		13.39	□□□□□ -0.27
DNMT1-223	ENST00000591239	CFAP70	Q5T0N1	1121 aa		13.38	□□□□□ -0.27
DNMT1-223	ENST00000591239	STK26	Q9P289	416 aa		13.38	□□□□□ -0.27
DNMT1-223	ENST00000591239	DCC	P43146	1447 aa		13.38	□□□□□ -0.27
DNMT1-223	ENST00000591239	DHX57	Q6P158	1386 aa	Known RBP	13.37	□□□□□ -0.27
DNMT1-223	ENST00000591239	ADGRL3	Q9HAR2	1447 aa		13.37	□□□□□ -0.27
DNMT1-223	ENST00000591239	LRPPRC	P42704	1394 aa	Known RBP	13.36	□□□□□ -0.27
DNMT1-223	ENST00000591239	ABCC11	Q96J66	1382 aa		13.36	□□□□□ -0.27
DNMT1-223	ENST00000591239	ASXL1	Q8IXJ9	1541 aa		13.36	□□□□□ -0.27
DNMT1-223	ENST00000591239	ROBO1	Q9Y6N7	1651 aa		13.36	□□□□□ -0.27
DNMT1-223	ENST00000591239	TECPR2	O15040	1411 aa		13.35	□□□□□ -0.27
DNMT1-223	ENST00000591239	YTHDC2	Q9H6S0	1430 aa	Known RBP	13.35	□□□□□ -0.27
DNMT1-223	ENST00000591239	LAMC1	P11047	1609 aa		13.34	□□□□□ -0.27
DNMT1-223	ENST00000591239	NALCN	Q8IZF0	1738 aa		13.33	□□□□□ -0.27
DNMT1-223	ENST00000591239	WAPL	Q7Z5K2	1190 aa		13.33	□□□□□ -0.28
DNMT1-223	ENST00000591239	SIN3A	Q96ST3	1273 aa		13.33	□□□□□ -0.28
DNMT1-223	ENST00000591239	MST1R	Q04912	1400 aa		13.31	□□□□□ -0.28
DNMT1-223	ENST00000591239	NEUROD1	Q13562	356 aa		13.31	□□□□□ -0.28
DNMT1-223	ENST00000591239	BRINP3	Q76B58	766 aa		13.31	□□□□□ -0.28
DNMT1-223	ENST00000591239	SIRT1	Q96EB6	747 aa		13.31	□□□□□ -0.28
DNMT1-223	ENST00000591239	KNDC1	Q76NI1	1749 aa		13.3	□□□□□ -0.28
DNMT1-223	ENST00000591239	PLEKHH1	Q9ULM0	1364 aa		13.3	□□□□□ -0.28
DNMT1-223	ENST00000591239	ADGRB1	O14514	1584 aa		13.29	□□□□□ -0.28
DNMT1-223	ENST00000591239	L3MBTL2	Q969R5	705 aa		13.29	□□□□□ -0.28
DNMT1-223	ENST00000591239	DISP3	Q9P2K9	1392 aa		13.29	□□□□□ -0.28
DNMT1-223	ENST00000591239	PRAM1	Q96QH2	718 aa		13.28	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms