RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, humanhuman

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-223ENST00000591239 NISCHQ9Y2I1 1504 aa22.38■■□□□ 1.17
DNMT1-223ENST00000591239 CCDC180Q9P1Z9 1646 aa19.89■□□□□ 0.77
DNMT1-223ENST00000591239 ABCC9O60706 1549 aa19.56■□□□□ 0.72
DNMT1-223ENST00000591239 DCAF8L2P0C7V8 631 aa18.78■□□□□ 0.6
DNMT1-223ENST00000591239 RB1CC1Q8TDY2 1594 aa18.77■□□□□ 0.6
DNMT1-223ENST00000591239 NACADO15069 1562 aa18.74■□□□□ 0.59
DNMT1-223ENST00000591239 ZCCHC6Q5VYS8 1495 aaKnown RBP18.62■□□□□ 0.57
DNMT1-223ENST00000591239 MYO15BQ96JP2 1530 aa18.61■□□□□ 0.57
DNMT1-223ENST00000591239 DCAF1Q9Y4B6 1507 aa18.51■□□□□ 0.55
DNMT1-223ENST00000591239 UNC13AQ9UPW8 1703 aa18.33■□□□□ 0.52
DNMT1-223ENST00000591239 PABPN1Q86U42 306 aaKnown RBP eCLIP18.3■□□□□ 0.52
DNMT1-223ENST00000591239 BICRAQ9NZM4 1560 aa18.21■□□□□ 0.51
DNMT1-223ENST00000591239 SCRIBQ14160 1630 aa18.17■□□□□ 0.5
DNMT1-223ENST00000591239 DNAJC5BQ9UF47 199 aa18.04■□□□□ 0.48
DNMT1-223ENST00000591239 SHROOM4Q9ULL8 1493 aa18■□□□□ 0.47
DNMT1-223ENST00000591239 CHIC1Q5VXU3 224 aa17.84■□□□□ 0.45
DNMT1-223ENST00000591239 EIF4G1Q04637 1599 aaKnown RBP17.74■□□□□ 0.43
DNMT1-223ENST00000591239 AEBP2Q6ZN18 517 aaPredicted RBP17.73■□□□□ 0.43
DNMT1-223ENST00000591239 CC2D2AQ9P2K1 1620 aa17.68■□□□□ 0.42
DNMT1-223ENST00000591239 CECR2Q9BXF3 1484 aa17.58■□□□□ 0.41
DNMT1-223ENST00000591239 SMARCA4P51532 1647 aa17.37■□□□□ 0.37
DNMT1-223ENST00000591239 BAZ1AQ9NRL2 1556 aaPredicted RBP17.35■□□□□ 0.37
DNMT1-223ENST00000591239 NCAPD3P42695 1498 aa17.31■□□□□ 0.36
DNMT1-223ENST00000591239 ATAD2BQ9ULI0 1458 aa17.31■□□□□ 0.36
DNMT1-223ENST00000591239 SMARCA2P51531 1590 aa17.28■□□□□ 0.36
DNMT1-223ENST00000591239 MROH2BQ7Z745 1585 aa17.25■□□□□ 0.35
DNMT1-223ENST00000591239 PEG3Q9GZU2 1588 aa17.2■□□□□ 0.34
DNMT1-223ENST00000591239 HMGXB3Q12766 1538 aa17.2■□□□□ 0.34
DNMT1-223ENST00000591239 BAZ1BQ9UIG0 1483 aaKnown RBP17.16■□□□□ 0.34
DNMT1-223ENST00000591239 WIZO95785 1651 aa17.06■□□□□ 0.32
DNMT1-223ENST00000591239 RSF1Q96T23 1441 aaPredicted RBP17.04■□□□□ 0.32
DNMT1-223ENST00000591239 NESP48681 1621 aa16.92■□□□□ 0.3
DNMT1-223ENST00000591239 ERCC6Q03468 1493 aa16.87■□□□□ 0.29
DNMT1-223ENST00000591239 TOP2AP11388 1531 aaKnown RBP16.86■□□□□ 0.29
DNMT1-223ENST00000591239 LAMC3Q9Y6N6 1575 aa16.85■□□□□ 0.29
DNMT1-223ENST00000591239 CADPSQ9ULU8 1353 aa16.81■□□□□ 0.28
DNMT1-223ENST00000591239 PDS5BQ9NTI5 1447 aa16.76■□□□□ 0.27
DNMT1-223ENST00000591239 CUX2O14529 1486 aa16.7■□□□□ 0.26
DNMT1-223ENST00000591239 CCDC88BA6NC98 1476 aa16.69■□□□□ 0.26
DNMT1-223ENST00000591239 CFTRP13569 1480 aa16.69■□□□□ 0.26
DNMT1-223ENST00000591239 KIF21AQ7Z4S6 1674 aa16.69■□□□□ 0.26
DNMT1-223ENST00000591239 THOC2Q8NI27 1593 aaKnown RBP16.64■□□□□ 0.25
DNMT1-223ENST00000591239 FANCD2Q9BXW9 1451 aa16.61■□□□□ 0.25
DNMT1-223ENST00000591239 SUPT5HO00267 1087 aaKnown RBP16.6■□□□□ 0.25
DNMT1-223ENST00000591239 CEP164Q9UPV0 1460 aa16.59■□□□□ 0.25
DNMT1-223ENST00000591239 MRC2Q9UBG0 1479 aa16.57■□□□□ 0.24
DNMT1-223ENST00000591239 WDR62O43379 1518 aa16.51■□□□□ 0.23
DNMT1-223ENST00000591239 PRDM2Q13029 1718 aa16.51■□□□□ 0.23
DNMT1-223ENST00000591239 URB2Q14146 1524 aaKnown RBP16.45■□□□□ 0.22
DNMT1-223ENST00000591239 TOPBP1Q92547 1522 aa16.33■□□□□ 0.2
DNMT1-223ENST00000591239 ABCC8Q09428 1581 aa16.33■□□□□ 0.2
DNMT1-223ENST00000591239 DNMBPQ6XZF7 1577 aa16.3■□□□□ 0.2
DNMT1-223ENST00000591239 DNAJC5Q9H3Z4 198 aa16.29■□□□□ 0.2
DNMT1-223ENST00000591239 IFT140Q96RY7 1462 aa16.24■□□□□ 0.19
DNMT1-223ENST00000591239 POLA1P09884 1462 aaPredicted RBP16.19■□□□□ 0.18
DNMT1-223ENST00000591239 CUX1P39880 1505 aa16.19■□□□□ 0.18
DNMT1-223ENST00000591239 ZNF608Q9ULD9 1512 aaPredicted RBP16.18■□□□□ 0.18
DNMT1-223ENST00000591239 TARBP1Q13395 1621 aaKnown RBP16.15■□□□□ 0.18
DNMT1-223ENST00000591239 SOGA1O94964 1423 aa16.14■□□□□ 0.17
DNMT1-223ENST00000591239 FGD5Q6ZNL6 1462 aa16.14■□□□□ 0.17
DNMT1-223ENST00000591239 RAD54L2Q9Y4B4 1467 aa16.13■□□□□ 0.17
DNMT1-223ENST00000591239 AQRO60306 1485 aaKnown RBP eCLIP16.1■□□□□ 0.179e-11■■■■■ 29.6
DNMT1-223ENST00000591239 EIF4G3O43432 1585 aaKnown RBP16.09■□□□□ 0.17
DNMT1-223ENST00000591239 WRNQ14191 1432 aaPredicted RBP eCLIP16.07■□□□□ 0.16
DNMT1-223ENST00000591239 TDRD9Q8NDG6 1382 aaKnown RBP16.06■□□□□ 0.16
DNMT1-223ENST00000591239 OSCARQ8IYS5 282 aa16.03■□□□□ 0.16
DNMT1-223ENST00000591239 TOP2BQ02880 1626 aa16.02■□□□□ 0.16
DNMT1-223ENST00000591239 SYNJ1O43426 1573 aa16.02■□□□□ 0.16
DNMT1-223ENST00000591239 BIVM-ERCC5R4GMW8 1640 aa16.01■□□□□ 0.15
DNMT1-223ENST00000591239 WDR97A6NE52 1622 aa16■□□□□ 0.15
DNMT1-223ENST00000591239 ABCA10Q8WWZ4 1543 aa15.98■□□□□ 0.15
DNMT1-223ENST00000591239 GRIN2BQ13224 1484 aa15.95■□□□□ 0.14
DNMT1-223ENST00000591239 GAPVD1Q14C86 1478 aa15.94■□□□□ 0.14
DNMT1-223ENST00000591239 SNAPC4Q5SXM2 1469 aa15.93■□□□□ 0.14
DNMT1-223ENST00000591239 FBLN2P98095 1184 aa15.93■□□□□ 0.14
DNMT1-223ENST00000591239 MAGI1Q96QZ7 1491 aaPredicted RBP15.91■□□□□ 0.14
DNMT1-223ENST00000591239 ABCA5Q8WWZ7 1642 aa15.9■□□□□ 0.14
DNMT1-223ENST00000591239 CHD1O14646 1710 aa15.89■□□□□ 0.13
DNMT1-223ENST00000591239 CHMP7Q8WUX9 453 aaPredicted RBP15.88■□□□□ 0.13
DNMT1-223ENST00000591239 PBRM1Q86U86 1689 aa15.88■□□□□ 0.13
DNMT1-223ENST00000591239 SYNJ2O15056 1496 aa15.84■□□□□ 0.13
DNMT1-223ENST00000591239 ERICH3Q5RHP9 1530 aa15.78■□□□□ 0.12
DNMT1-223ENST00000591239 FHAD1B1AJZ9 1412 aa15.76■□□□□ 0.11
DNMT1-223ENST00000591239 ADAMTS12P58397 1594 aa15.75■□□□□ 0.11
DNMT1-223ENST00000591239 ARHGEF11O15085 1522 aa15.74■□□□□ 0.11
DNMT1-223ENST00000591239 TRIM41Q8WV44 630 aa15.74■□□□□ 0.11
DNMT1-223ENST00000591239 RIMBP3CA6NJZ7 1639 aa15.74■□□□□ 0.11
DNMT1-223ENST00000591239 RIMBP3BA6NNM3 1639 aa15.74■□□□□ 0.11
DNMT1-223ENST00000591239 RIMBP3Q9UFD9 1639 aa15.74■□□□□ 0.11
DNMT1-223ENST00000591239 KIF27Q86VH2 1401 aa15.74■□□□□ 0.11
DNMT1-223ENST00000591239 CLASP1Q7Z460 1538 aa15.73■□□□□ 0.11
DNMT1-223ENST00000591239 GRIN2AQ12879 1464 aa15.73■□□□□ 0.11
DNMT1-223ENST00000591239 IGF1RP08069 1367 aa15.7■□□□□ 0.1
DNMT1-223ENST00000591239 PHF23Q9BUL5 403 aaPredicted RBP15.68■□□□□ 0.1
DNMT1-223ENST00000591239 NUP160Q12769 1436 aa15.67■□□□□ 0.1
DNMT1-223ENST00000591239 CEP170Q5SW79 1584 aa15.66■□□□□ 0.1
DNMT1-223ENST00000591239 CYB5RLQ6IPT4 315 aa15.64■□□□□ 0.09
DNMT1-223ENST00000591239 CUL7Q14999 1698 aa15.62■□□□□ 0.09
DNMT1-223ENST00000591239 ARAP1Q96P48 1450 aa15.61■□□□□ 0.09
DNMT1-223ENST00000591239 CARMIL1Q5VZK9 1371 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms