RNA–Protein interactions for RNA: ENST00000588410.1

TPM4-208, Transcript of tropomyosin 4, humanhuman

TSL 4

Gene TPM4, Length 563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-208ENST00000588410 SCAF1Q9H7N4 1312 aaKnown RBP29.33■■■□□ 2.29
TPM4-208ENST00000588410 ZFYVE9O95405 1425 aa29.32■■■□□ 2.28
TPM4-208ENST00000588410 LRRC7Q96NW7 1537 aa29.3■■■□□ 2.28
TPM4-208ENST00000588410 PIP4K2BP78356 416 aa29.3■■■□□ 2.28
TPM4-208ENST00000588410 TMEM131LA2VDJ0 1609 aa29.3■■■□□ 2.28
TPM4-208ENST00000588410 PLEKHG1Q9ULL1 1385 aa29.29■■■□□ 2.28
TPM4-208ENST00000588410 KCNA6P17658 529 aa29.29■■■□□ 2.28
TPM4-208ENST00000588410 NUTM2DQ5VT03 806 aaPredicted RBP29.28■■■□□ 2.28
TPM4-208ENST00000588410 SLC4A1APQ9BWU0 796 aaKnown RBP29.28■■■□□ 2.28
TPM4-208ENST00000588410 ZNF326Q5BKZ1 582 aaKnown RBP29.25■■■□□ 2.27
TPM4-208ENST00000588410 PROSER2Q86WR7 435 aaPredicted RBP29.21■■■□□ 2.27
TPM4-208ENST00000588410 STRCP1A6NGW2 1772 aa29.21■■■□□ 2.27
TPM4-208ENST00000588410 TBX22Q9Y458 520 aa29.2■■■□□ 2.26
TPM4-208ENST00000588410 SPHKAPQ2M3C7 1700 aa29.17■■■□□ 2.26
TPM4-208ENST00000588410 TMEM94Q12767 1356 aa29.16■■■□□ 2.26
TPM4-208ENST00000588410 TRPM2O94759 1503 aa29.16■■■□□ 2.26
TPM4-208ENST00000588410 MYO5BQ9ULV0 1848 aa29.15■■■□□ 2.26
TPM4-208ENST00000588410 HSPA1LP34931 641 aa29.13■■■□□ 2.25
TPM4-208ENST00000588410 ACIN1Q9UKV3 1341 aaKnown RBP29.13■■■□□ 2.25
TPM4-208ENST00000588410 RBM33Q96EV2 1170 aaKnown RBP29.12■■■□□ 2.25
TPM4-208ENST00000588410 NKTRP30414 1462 aaKnown RBP29.11■■■□□ 2.25
TPM4-208ENST00000588410 ADAMTS13Q76LX8 1427 aa29.11■■■□□ 2.25
TPM4-208ENST00000588410 MPHOSPH9Q99550 1183 aa29.1■■■□□ 2.25
TPM4-208ENST00000588410 SETD5Q9C0A6 1442 aa29.1■■■□□ 2.25
TPM4-208ENST00000588410 CLTCL1P53675 1640 aa29.09■■■□□ 2.25
TPM4-208ENST00000588410 FOXD1Q16676 465 aa29.09■■■□□ 2.25
TPM4-208ENST00000588410 NWD1Q149M9 1564 aa29.07■■■□□ 2.24
TPM4-208ENST00000588410 PIK3R4Q99570 1358 aa29.07■■■□□ 2.24
TPM4-208ENST00000588410 ALKQ9UM73 1620 aa29.05■■■□□ 2.24
TPM4-208ENST00000588410 DIP2AQ14689 1571 aa29.05■■■□□ 2.24
TPM4-208ENST00000588410 DISP3Q9P2K9 1392 aa29.04■■■□□ 2.24
TPM4-208ENST00000588410 MSH6P52701 1360 aa29.02■■■□□ 2.24
TPM4-208ENST00000588410 C14orf37Q86TY3 774 aa29.02■■■□□ 2.24
TPM4-208ENST00000588410 AMOTL2Q9Y2J4 779 aa29.02■■■□□ 2.24
TPM4-208ENST00000588410 VGFO15240 615 aaPredicted RBP29.01■■■□□ 2.23
TPM4-208ENST00000588410 RPGRIP1LQ68CZ1 1315 aa29■■■□□ 2.23
TPM4-208ENST00000588410 CCDC144AA2RUR9 1427 aa28.99■■■□□ 2.23
TPM4-208ENST00000588410 RAB3GAP2Q9H2M9 1393 aa28.98■■■□□ 2.23
TPM4-208ENST00000588410 NEXMIFQ5QGS0 1516 aa28.97■■■□□ 2.23
TPM4-208ENST00000588410 SETBP1Q9Y6X0 1596 aa28.96■■■□□ 2.23
TPM4-208ENST00000588410 NCOA3Q9Y6Q9 1424 aa28.95■■■□□ 2.23
TPM4-208ENST00000588410 CHD2O14647 1828 aaKnown RBP28.93■■■□□ 2.22
TPM4-208ENST00000588410 KIF1BO60333 1816 aa28.93■■■□□ 2.22
TPM4-208ENST00000588410 XIRP1Q702N8 1843 aaKnown RBP28.93■■■□□ 2.22
TPM4-208ENST00000588410 FAM135BQ49AJ0 1406 aa28.93■■■□□ 2.22
TPM4-208ENST00000588410 PTPRUQ92729 1446 aa28.93■■■□□ 2.22
TPM4-208ENST00000588410 METP08581 1390 aa28.92■■■□□ 2.22
TPM4-208ENST00000588410 RGL3Q3MIN7 710 aa28.91■■■□□ 2.22
TPM4-208ENST00000588410 SLAIN2Q9P270 581 aa28.91■■■□□ 2.22
TPM4-208ENST00000588410 C19orf44Q9H6X5 657 aa28.9■■■□□ 2.22
TPM4-208ENST00000588410 NRXN3Q9Y4C0 1643 aa28.88■■■□□ 2.21
TPM4-208ENST00000588410 ATF3P18847 181 aa28.88■■■□□ 2.21
TPM4-208ENST00000588410 CADPS2Q86UW7 1296 aa28.86■■■□□ 2.21
TPM4-208ENST00000588410 HRCP23327 699 aa28.82■■■□□ 2.2
TPM4-208ENST00000588410 SPATA31E1Q6ZUB1 1445 aa28.82■■■□□ 2.2
TPM4-208ENST00000588410 ANKRD30BQ9BXX2 1392 aa28.81■■■□□ 2.2
TPM4-208ENST00000588410 ADGRF5Q8IZF2 1346 aa28.79■■■□□ 2.2
TPM4-208ENST00000588410 XRN1Q8IZH2 1706 aaKnown RBP28.77■■■□□ 2.2
TPM4-208ENST00000588410 ROBO1Q9Y6N7 1651 aa28.75■■■□□ 2.19
TPM4-208ENST00000588410 DCCP43146 1447 aa28.73■■■□□ 2.19
TPM4-208ENST00000588410 ILDR2Q71H61 639 aa28.73■■■□□ 2.19
TPM4-208ENST00000588410 PHF23Q9BUL5 403 aaPredicted RBP28.73■■■□□ 2.19
TPM4-208ENST00000588410 MED1Q15648 1581 aaPredicted RBP28.72■■■□□ 2.19
TPM4-208ENST00000588410 PPLO60437 1756 aa28.72■■■□□ 2.19
TPM4-208ENST00000588410 PTCH1Q13635 1447 aa28.7■■■□□ 2.19
TPM4-208ENST00000588410 ADGRL3Q9HAR2 1447 aa28.69■■■□□ 2.18
TPM4-208ENST00000588410 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.69■■■□□ 2.18
TPM4-208ENST00000588410 ROBO2Q9HCK4 1378 aa28.69■■■□□ 2.18
TPM4-208ENST00000588410 STK26Q9P289 416 aa28.66■■■□□ 2.18
TPM4-208ENST00000588410 BRINP3Q76B58 766 aa28.65■■■□□ 2.18
TPM4-208ENST00000588410 PIK3C2GO75747 1445 aa28.64■■■□□ 2.18
TPM4-208ENST00000588410 PRAG1Q86YV5 1406 aa28.63■■■□□ 2.17
TPM4-208ENST00000588410 TMEM132EQ6IEE7 984 aa28.62■■■□□ 2.17
TPM4-208ENST00000588410 MST1RQ04912 1400 aa28.61■■■□□ 2.17
TPM4-208ENST00000588410 SETD1AO15047 1707 aaKnown RBP28.61■■■□□ 2.17
TPM4-208ENST00000588410 JCADQ9P266 1359 aa28.61■■■□□ 2.17
TPM4-208ENST00000588410 LRPPRCP42704 1394 aaKnown RBP28.6■■■□□ 2.17
TPM4-208ENST00000588410 C14orf93Q9H972 538 aaKnown RBP28.59■■■□□ 2.17
TPM4-208ENST00000588410 MYOM2P54296 1465 aa28.58■■■□□ 2.17
TPM4-208ENST00000588410 SOCS7O14512 581 aa28.57■■■□□ 2.16
TPM4-208ENST00000588410 PHLPP1O60346 1717 aa28.57■■■□□ 2.16
TPM4-208ENST00000588410 CFAP70Q5T0N1 1121 aa28.56■■■□□ 2.16
TPM4-208ENST00000588410 ABCC11Q96J66 1382 aa28.56■■■□□ 2.16
TPM4-208ENST00000588410 IFT172Q9UG01 1749 aa28.56■■■□□ 2.16
TPM4-208ENST00000588410 DCAF11Q8TEB1 546 aa28.54■■■□□ 2.16
TPM4-208ENST00000588410 KDM2AQ9Y2K7 1162 aa28.54■■■□□ 2.16
TPM4-208ENST00000588410 ASXL1Q8IXJ9 1541 aa28.53■■■□□ 2.16
TPM4-208ENST00000588410 NRXN1Q9ULB1 1477 aa28.53■■■□□ 2.16
TPM4-208ENST00000588410 WAPLQ7Z5K2 1190 aa28.53■■■□□ 2.16
TPM4-208ENST00000588410 AHDC1Q5TGY3 1603 aaPredicted RBP28.53■■■□□ 2.16
TPM4-208ENST00000588410 TECPR2O15040 1411 aa28.52■■■□□ 2.16
TPM4-208ENST00000588410 YTHDC2Q9H6S0 1430 aaKnown RBP28.52■■■□□ 2.16
TPM4-208ENST00000588410 DHX57Q6P158 1386 aaKnown RBP28.52■■■□□ 2.16
TPM4-208ENST00000588410 C1orf167Q5SNV9 1468 aa28.52■■■□□ 2.16
TPM4-208ENST00000588410 NALCNQ8IZF0 1738 aa28.52■■■□□ 2.16
TPM4-208ENST00000588410 STAC3Q96MF2 364 aa28.51■■■□□ 2.15
TPM4-208ENST00000588410 COL16A1Q07092 1604 aaPredicted RBP28.5■■■□□ 2.15
TPM4-208ENST00000588410 SPATA31A6Q5VVP1 1343 aa28.48■■■□□ 2.15
TPM4-208ENST00000588410 SIRT1Q96EB6 747 aa28.48■■■□□ 2.15
TPM4-208ENST00000588410 ORAI2Q96SN7 254 aa28.47■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms