RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 KDM5AP29375 1690 aaKnown RBP8.79□□□□□ -1
LIG3-206ENST00000586058 REM2Q8IYK8 340 aaPredicted RBP8.79□□□□□ -1
LIG3-206ENST00000586058 MADDQ8WXG6 1647 aa8.79□□□□□ -1
LIG3-206ENST00000586058 ARHGAP31Q2M1Z3 1444 aa8.79□□□□□ -1
LIG3-206ENST00000586058 ARID4BQ4LE39 1312 aaPredicted RBP8.79□□□□□ -1
LIG3-206ENST00000586058 ZNF316A6NFI3 1004 aaPredicted RBP8.78□□□□□ -1
LIG3-206ENST00000586058 ADGRB3O60242 1522 aa8.78□□□□□ -1
LIG3-206ENST00000586058 PTPRTO14522 1441 aa8.78□□□□□ -1
LIG3-206ENST00000586058 NPATQ14207 1427 aa8.78□□□□□ -1
LIG3-206ENST00000586058 C3P01024 1663 aa8.78□□□□□ -1
LIG3-206ENST00000586058 RIMS1Q86UR5 1692 aaKnown RBP8.78□□□□□ -1
LIG3-206ENST00000586058 SYNMO15061 1565 aa8.78□□□□□ -1
LIG3-206ENST00000586058 COL17A1Q9UMD9 1497 aaPredicted RBP8.77□□□□□ -1
LIG3-206ENST00000586058 PPP1R15AO75807 674 aaPredicted RBP8.77□□□□□ -1.01
LIG3-206ENST00000586058 RALGAPBQ86X10 1494 aa8.77□□□□□ -1.01
LIG3-206ENST00000586058 SPATA31D1Q6ZQQ2 1576 aa8.76□□□□□ -1.01
LIG3-206ENST00000586058 UGGT1Q9NYU2 1555 aa8.76□□□□□ -1.01
LIG3-206ENST00000586058 IQGAP1P46940 1657 aa8.75□□□□□ -1.01
LIG3-206ENST00000586058 ZNF326Q5BKZ1 582 aaKnown RBP8.75□□□□□ -1.01
LIG3-206ENST00000586058 L3MBTL2Q969R5 705 aa8.75□□□□□ -1.01
LIG3-206ENST00000586058 MYOM2P54296 1465 aa8.75□□□□□ -1.01
LIG3-206ENST00000586058 ERVK-7P63135 1459 aa8.75□□□□□ -1.01
LIG3-206ENST00000586058 UHRF1BP1Q6BDS2 1440 aa8.74□□□□□ -1.01
LIG3-206ENST00000586058 STAC3Q96MF2 364 aa8.74□□□□□ -1.01
LIG3-206ENST00000586058 PLA2R1Q13018 1463 aa8.74□□□□□ -1.01
LIG3-206ENST00000586058 TMEM131LA2VDJ0 1609 aa8.73□□□□□ -1.01
LIG3-206ENST00000586058 DCAF11Q8TEB1 546 aa8.73□□□□□ -1.01
LIG3-206ENST00000586058 UBR1Q8IWV7 1749 aa8.73□□□□□ -1.01
LIG3-206ENST00000586058 MYO3AQ8NEV4 1616 aa8.72□□□□□ -1.01
LIG3-206ENST00000586058 NOS1P29475 1434 aa8.72□□□□□ -1.01
LIG3-206ENST00000586058 SPATA31E1Q6ZUB1 1445 aa8.72□□□□□ -1.01
LIG3-206ENST00000586058 MLECQ14165 292 aa8.72□□□□□ -1.01
LIG3-206ENST00000586058 ROCK2O75116 1388 aaKnown RBP8.72□□□□□ -1.01
LIG3-206ENST00000586058 PRAG1Q86YV5 1406 aa8.71□□□□□ -1.01
LIG3-206ENST00000586058 CHGAP10645 457 aaKnown RBP8.71□□□□□ -1.02
LIG3-206ENST00000586058 EIF4G2P78344 907 aaKnown RBP eCLIP8.71□□□□□ -1.02
LIG3-206ENST00000586058 RGL3Q3MIN7 710 aa8.71□□□□□ -1.02
LIG3-206ENST00000586058 ZNF142P52746 1687 aaPredicted RBP8.71□□□□□ -1.02
LIG3-206ENST00000586058 NEXMIFQ5QGS0 1516 aa8.7□□□□□ -1.02
LIG3-206ENST00000586058 SETBP1Q9Y6X0 1596 aa8.7□□□□□ -1.02
LIG3-206ENST00000586058 PITPNM1O00562 1244 aa8.7□□□□□ -1.02
LIG3-206ENST00000586058 PIP4P2Q8N4L2 257 aa8.7□□□□□ -1.02
LIG3-206ENST00000586058 SLC52A1Q9NWF4 448 aa8.7□□□□□ -1.02
LIG3-206ENST00000586058 STAG3Q9UJ98 1225 aa8.7□□□□□ -1.02
LIG3-206ENST00000586058 KDM2AQ9Y2K7 1162 aa8.7□□□□□ -1.02
LIG3-206ENST00000586058 EIF3AQ14152 1382 aaKnown RBP8.7□□□□□ -1.02
LIG3-206ENST00000586058 ADAMTSL3P82987 1691 aa8.69□□□□□ -1.02
LIG3-206ENST00000586058 QRICH2Q9H0J4 1663 aa8.69□□□□□ -1.02
LIG3-206ENST00000586058 DIEXFQ68CQ4 756 aaKnown RBP8.68□□□□□ -1.02
LIG3-206ENST00000586058 RPGRIP1LQ68CZ1 1315 aa8.68□□□□□ -1.02
LIG3-206ENST00000586058 USP47Q96K76 1375 aa8.68□□□□□ -1.02
LIG3-206ENST00000586058 NLRP1Q9C000 1473 aa8.68□□□□□ -1.02
LIG3-206ENST00000586058 ARHGEF28Q8N1W1 1705 aaKnown RBP8.68□□□□□ -1.02
LIG3-206ENST00000586058 CARD11Q9BXL7 1154 aa8.67□□□□□ -1.02
LIG3-206ENST00000586058 ZMYM3Q14202 1370 aa8.66□□□□□ -1.02
LIG3-206ENST00000586058 TNRQ92752 1358 aa8.66□□□□□ -1.02
LIG3-206ENST00000586058 MKRN4PQ13434 485 aaPredicted RBP8.66□□□□□ -1.02
LIG3-206ENST00000586058 SETD1BQ9UPS6 1966 aaKnown RBP8.65□□□□□ -1.02
LIG3-206ENST00000586058 SPDYE2BA6NHP3 402 aa8.65□□□□□ -1.02
LIG3-206ENST00000586058 SPDYE6P0CI01 402 aa8.65□□□□□ -1.02
LIG3-206ENST00000586058 SPDYE2Q495Y8 402 aa8.65□□□□□ -1.02
LIG3-206ENST00000586058 KNDC1Q76NI1 1749 aa8.65□□□□□ -1.03
LIG3-206ENST00000586058 CEP170BQ9Y4F5 1589 aaPredicted RBP8.65□□□□□ -1.03
LIG3-206ENST00000586058 NRXN1Q9ULB1 1477 aa8.64□□□□□ -1.03
LIG3-206ENST00000586058 FXR2P51116 673 aaKnown RBP eCLIP8.64□□□□□ -1.03
LIG3-206ENST00000586058 NBPF8Q3BBV2 869 aa8.64□□□□□ -1.03
LIG3-206ENST00000586058 SCAF11Q99590 1463 aaKnown RBP8.64□□□□□ -1.03
LIG3-206ENST00000586058 PIK3C2GO75747 1445 aa8.63□□□□□ -1.03
LIG3-206ENST00000586058 SETD1AO15047 1707 aaKnown RBP8.63□□□□□ -1.03
LIG3-206ENST00000586058 GPRASP1Q5JY77 1395 aa8.63□□□□□ -1.03
LIG3-206ENST00000586058 VGFO15240 615 aaPredicted RBP8.63□□□□□ -1.03
LIG3-206ENST00000586058 HSPA5P11021 654 aaKnown RBP8.63□□□□□ -1.03
LIG3-206ENST00000586058 HDGFP51858 240 aaKnown RBP8.63□□□□□ -1.03
LIG3-206ENST00000586058 ZFYVE9O95405 1425 aa8.63□□□□□ -1.03
LIG3-206ENST00000586058 DIP2AQ14689 1571 aa8.62□□□□□ -1.03
LIG3-206ENST00000586058 A2ML1A8K2U0 1454 aa8.62□□□□□ -1.03
LIG3-206ENST00000586058 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.61□□□□□ -1.03
LIG3-206ENST00000586058 SP7Q8TDD2 431 aaPredicted RBP8.61□□□□□ -1.03
LIG3-206ENST00000586058 RIMS2Q9UQ26 1411 aa8.61□□□□□ -1.03
LIG3-206ENST00000586058 IDI1Q13907 227 aa8.6□□□□□ -1.03
LIG3-206ENST00000586058 ALKQ9UM73 1620 aa8.6□□□□□ -1.03
LIG3-206ENST00000586058 FBXO31Q5XUX0 539 aaPredicted RBP8.59□□□□□ -1.03
LIG3-206ENST00000586058 HIRIP3Q9BW71 556 aaPredicted RBP8.59□□□□□ -1.03
LIG3-206ENST00000586058 MYOM1P52179 1685 aa8.59□□□□□ -1.03
LIG3-206ENST00000586058 NRXN3Q9Y4C0 1643 aa8.58□□□□□ -1.04
LIG3-206ENST00000586058 ADGRB1O14514 1584 aa8.58□□□□□ -1.04
LIG3-206ENST00000586058 CDCA8Q53HL2 280 aa8.58□□□□□ -1.04
LIG3-206ENST00000586058 SLIT1O75093 1534 aa8.58□□□□□ -1.04
LIG3-206ENST00000586058 CCDC7Q96M83 1385 aa8.58□□□□□ -1.04
LIG3-206ENST00000586058 ITSN1Q15811 1721 aa8.57□□□□□ -1.04
LIG3-206ENST00000586058 TMF1P82094 1093 aa8.57□□□□□ -1.04
LIG3-206ENST00000586058 POLR3GLQ9BT43 218 aa8.57□□□□□ -1.04
LIG3-206ENST00000586058 ADGRF5Q8IZF2 1346 aa8.56□□□□□ -1.04
LIG3-206ENST00000586058 BCANQ96GW7 911 aa8.56□□□□□ -1.04
LIG3-206ENST00000586058 EID1Q9Y6B2 187 aa8.56□□□□□ -1.04
LIG3-206ENST00000586058 CPS1P31327 1500 aa8.55□□□□□ -1.04
LIG3-206ENST00000586058 DLC1Q96QB1 1528 aa8.55□□□□□ -1.04
LIG3-206ENST00000586058 ST20-MTHFSA0A0A6YYL1 179 aa8.55□□□□□ -1.04
LIG3-206ENST00000586058 ANP32CO43423 234 aa8.55□□□□□ -1.04
LIG3-206ENST00000586058 DDX10Q13206 875 aaKnown RBP8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms