RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 AEBP2Q6ZN18 517 aaPredicted RBP16.06■□□□□ 0.16
LIG3-206ENST00000586058 CHIC1Q5VXU3 224 aa15.17■□□□□ 0.02
LIG3-206ENST00000586058 NISCHQ9Y2I1 1504 aa14.1□□□□□ -0.15
LIG3-206ENST00000586058 SENP3Q9H4L4 574 aaPredicted RBP13.66□□□□□ -0.22
LIG3-206ENST00000586058 PHF23Q9BUL5 403 aaPredicted RBP13.49□□□□□ -0.25
LIG3-206ENST00000586058 FOXD1Q16676 465 aa12.77□□□□□ -0.37
LIG3-206ENST00000586058 CCDC180Q9P1Z9 1646 aa12.56□□□□□ -0.4
LIG3-206ENST00000586058 PLPPR3Q6T4P5 718 aa12.06□□□□□ -0.48
LIG3-206ENST00000586058 MSH5O43196 834 aa11.94□□□□□ -0.5
LIG3-206ENST00000586058 PIAS4Q8N2W9 510 aaPredicted RBP11.9□□□□□ -0.5
LIG3-206ENST00000586058 PPP6R1Q9UPN7 881 aa11.9□□□□□ -0.5
LIG3-206ENST00000586058 ZCCHC6Q5VYS8 1495 aaKnown RBP11.85□□□□□ -0.51
LIG3-206ENST00000586058 ADRA2BP18089 450 aa11.85□□□□□ -0.51
LIG3-206ENST00000586058 POTEDQ86YR6 584 aa11.79□□□□□ -0.52
LIG3-206ENST00000586058 DCAF1Q9Y4B6 1507 aa11.71□□□□□ -0.53
LIG3-206ENST00000586058 ABCC9O60706 1549 aa11.69□□□□□ -0.54
LIG3-206ENST00000586058 MYO15BQ96JP2 1530 aa11.6□□□□□ -0.55
LIG3-206ENST00000586058 NACADO15069 1562 aa11.59□□□□□ -0.55
LIG3-206ENST00000586058 DCAF8L2P0C7V8 631 aa11.58□□□□□ -0.56
LIG3-206ENST00000586058 RB1CC1Q8TDY2 1594 aa11.56□□□□□ -0.56
LIG3-206ENST00000586058 SCRIBQ14160 1630 aa11.42□□□□□ -0.58
LIG3-206ENST00000586058 UNC13AQ9UPW8 1703 aa11.38□□□□□ -0.59
LIG3-206ENST00000586058 SHROOM4Q9ULL8 1493 aa11.37□□□□□ -0.59
LIG3-206ENST00000586058 BICRAQ9NZM4 1560 aa11.06□□□□□ -0.64
LIG3-206ENST00000586058 BAZ1AQ9NRL2 1556 aaPredicted RBP10.99□□□□□ -0.65
LIG3-206ENST00000586058 SMARCA4P51532 1647 aa10.95□□□□□ -0.66
LIG3-206ENST00000586058 MAPK8IP2Q13387 824 aaPredicted RBP10.9□□□□□ -0.66
LIG3-206ENST00000586058 SUPT5HO00267 1087 aaKnown RBP10.89□□□□□ -0.67
LIG3-206ENST00000586058 PABPN1Q86U42 306 aaKnown RBP eCLIP10.88□□□□□ -0.67
LIG3-206ENST00000586058 CECR2Q9BXF3 1484 aa10.86□□□□□ -0.67
LIG3-206ENST00000586058 WIZO95785 1651 aa10.85□□□□□ -0.67
LIG3-206ENST00000586058 MROH2BQ7Z745 1585 aa10.85□□□□□ -0.67
LIG3-206ENST00000586058 DMRT2Q9Y5R5 561 aa10.84□□□□□ -0.67
LIG3-206ENST00000586058 RSF1Q96T23 1441 aaPredicted RBP10.83□□□□□ -0.68
LIG3-206ENST00000586058 EIF4G1Q04637 1599 aaKnown RBP10.8□□□□□ -0.68
LIG3-206ENST00000586058 SMARCA2P51531 1590 aa10.79□□□□□ -0.68
LIG3-206ENST00000586058 PEG3Q9GZU2 1588 aa10.78□□□□□ -0.68
LIG3-206ENST00000586058 SCAF1Q9H7N4 1312 aaKnown RBP10.78□□□□□ -0.68
LIG3-206ENST00000586058 TOP2AP11388 1531 aaKnown RBP10.76□□□□□ -0.69
LIG3-206ENST00000586058 HMGXB3Q12766 1538 aa10.69□□□□□ -0.7
LIG3-206ENST00000586058 BAZ1BQ9UIG0 1483 aaKnown RBP10.69□□□□□ -0.7
LIG3-206ENST00000586058 CC2D2AQ9P2K1 1620 aa10.66□□□□□ -0.7
LIG3-206ENST00000586058 ATAD2BQ9ULI0 1458 aa10.65□□□□□ -0.7
LIG3-206ENST00000586058 PRDM2Q13029 1718 aa10.63□□□□□ -0.71
LIG3-206ENST00000586058 NCAPD3P42695 1498 aa10.57□□□□□ -0.72
LIG3-206ENST00000586058 PPP4R3CPQ6ZMV5 832 aa10.57□□□□□ -0.72
LIG3-206ENST00000586058 CCDC88BA6NC98 1476 aa10.52□□□□□ -0.73
LIG3-206ENST00000586058 HOXD11P31277 338 aaPredicted RBP10.42□□□□□ -0.74
LIG3-206ENST00000586058 LAMC3Q9Y6N6 1575 aa10.39□□□□□ -0.75
LIG3-206ENST00000586058 CNKSR2Q8WXI2 1034 aa10.38□□□□□ -0.75
LIG3-206ENST00000586058 DCAF8L1A6NGE4 600 aa10.36□□□□□ -0.75
LIG3-206ENST00000586058 ABCC8Q09428 1581 aa10.35□□□□□ -0.75
LIG3-206ENST00000586058 CFTRP13569 1480 aa10.33□□□□□ -0.76
LIG3-206ENST00000586058 BIVM-ERCC5R4GMW8 1640 aa10.33□□□□□ -0.76
LIG3-206ENST00000586058 RNF216Q9NWF9 866 aaPredicted RBP10.31□□□□□ -0.76
LIG3-206ENST00000586058 KIF21AQ7Z4S6 1674 aa10.3□□□□□ -0.76
LIG3-206ENST00000586058 TRIM41Q8WV44 630 aa10.29□□□□□ -0.76
LIG3-206ENST00000586058 TOP2BQ02880 1626 aa10.29□□□□□ -0.76
LIG3-206ENST00000586058 CADPSQ9ULU8 1353 aa10.28□□□□□ -0.76
LIG3-206ENST00000586058 WRNQ14191 1432 aaPredicted RBP eCLIP10.28□□□□□ -0.76
LIG3-206ENST00000586058 CACNB1Q02641 598 aaPredicted RBP10.28□□□□□ -0.76
LIG3-206ENST00000586058 SYNJ1O43426 1573 aa10.26□□□□□ -0.77
LIG3-206ENST00000586058 CEP164Q9UPV0 1460 aa10.24□□□□□ -0.77
LIG3-206ENST00000586058 FANCD2Q9BXW9 1451 aa10.23□□□□□ -0.77
LIG3-206ENST00000586058 PDS5BQ9NTI5 1447 aa10.22□□□□□ -0.77
LIG3-206ENST00000586058 DNMBPQ6XZF7 1577 aa10.22□□□□□ -0.77
LIG3-206ENST00000586058 RNF39Q9H2S5 420 aa10.21□□□□□ -0.77
LIG3-206ENST00000586058 NESP48681 1621 aa10.21□□□□□ -0.78
LIG3-206ENST00000586058 CUX1P39880 1505 aa10.17□□□□□ -0.78
LIG3-206ENST00000586058 EEA1Q15075 1411 aa10.17□□□□□ -0.78
LIG3-206ENST00000586058 ERCC6Q03468 1493 aa10.14□□□□□ -0.79
LIG3-206ENST00000586058 WDR97A6NE52 1622 aa10.12□□□□□ -0.79
LIG3-206ENST00000586058 TOPBP1Q92547 1522 aa10.12□□□□□ -0.79
LIG3-206ENST00000586058 MRC2Q9UBG0 1479 aa10.11□□□□□ -0.79
LIG3-206ENST00000586058 NCBP3Q53F19 620 aaKnown RBP10.11□□□□□ -0.79
LIG3-206ENST00000586058 DNAJC5BQ9UF47 199 aa10.11□□□□□ -0.79
LIG3-206ENST00000586058 FGD5Q6ZNL6 1462 aa10.1□□□□□ -0.79
LIG3-206ENST00000586058 KIF21BO75037 1637 aa10.09□□□□□ -0.79
LIG3-206ENST00000586058 THOC2Q8NI27 1593 aaKnown RBP10.09□□□□□ -0.79
LIG3-206ENST00000586058 WDR62O43379 1518 aa10.07□□□□□ -0.8
LIG3-206ENST00000586058 PBRM1Q86U86 1689 aa10.07□□□□□ -0.8
LIG3-206ENST00000586058 URB2Q14146 1524 aaKnown RBP10.07□□□□□ -0.8
LIG3-206ENST00000586058 CUL7Q14999 1698 aa10.06□□□□□ -0.8
LIG3-206ENST00000586058 KIF27Q86VH2 1401 aa10.05□□□□□ -0.8
LIG3-206ENST00000586058 POLA1P09884 1462 aaPredicted RBP10.04□□□□□ -0.8
LIG3-206ENST00000586058 FAM9AQ8IZU1 332 aaPredicted RBP10.04□□□□□ -0.8
LIG3-206ENST00000586058 C1QBPQ07021 282 aaKnown RBP10.03□□□□□ -0.8
LIG3-206ENST00000586058 SOGA1O94964 1423 aa10.02□□□□□ -0.81
LIG3-206ENST00000586058 NPM3O75607 178 aaKnown RBP10.02□□□□□ -0.81
LIG3-206ENST00000586058 GOLGA3Q08378 1498 aa10.02□□□□□ -0.81
LIG3-206ENST00000586058 ABCA10Q8WWZ4 1543 aa10.02□□□□□ -0.81
LIG3-206ENST00000586058 ABCA5Q8WWZ7 1642 aa10.01□□□□□ -0.81
LIG3-206ENST00000586058 CUX2O14529 1486 aa10.01□□□□□ -0.81
LIG3-206ENST00000586058 ERICH3Q5RHP9 1530 aa10.01□□□□□ -0.81
LIG3-206ENST00000586058 TARBP1Q13395 1621 aaKnown RBP10□□□□□ -0.81
LIG3-206ENST00000586058 CTTNBP2Q8WZ74 1663 aa10□□□□□ -0.81
LIG3-206ENST00000586058 RUSC2Q8N2Y8 1516 aa9.97□□□□□ -0.81
LIG3-206ENST00000586058 IFT140Q96RY7 1462 aa9.97□□□□□ -0.81
LIG3-206ENST00000586058 CSRNP3Q8WYN3 585 aa9.96□□□□□ -0.82
LIG3-206ENST00000586058 EIF4G3O43432 1585 aaKnown RBP9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms