RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 SCAF11Q99590 1463 aaKnown RBP13.77□□□□□ -0.21
VPS35-206ENST00000565228 IQGAP1P46940 1657 aa13.76□□□□□ -0.21
VPS35-206ENST00000565228 NPHP4O75161 1426 aaPredicted RBP13.76□□□□□ -0.21
VPS35-206ENST00000565228 ZNF335Q9H4Z2 1342 aaPredicted RBP13.76□□□□□ -0.21
VPS35-206ENST00000565228 HRCP23327 699 aa13.76□□□□□ -0.21
VPS35-206ENST00000565228 TXNDC2Q86VQ3 553 aa13.75□□□□□ -0.21
VPS35-206ENST00000565228 ANKLE2Q86XL3 938 aa13.75□□□□□ -0.21
VPS35-206ENST00000565228 RIMS2Q9UQ26 1411 aa13.74□□□□□ -0.21
VPS35-206ENST00000565228 CHGAP10645 457 aaKnown RBP13.74□□□□□ -0.21
VPS35-206ENST00000565228 NEXMIFQ5QGS0 1516 aa13.74□□□□□ -0.21
VPS35-206ENST00000565228 KIF1BO60333 1816 aa13.74□□□□□ -0.21
VPS35-206ENST00000565228 ANKRD30BQ9BXX2 1392 aa13.73□□□□□ -0.21
VPS35-206ENST00000565228 NRXN3Q9Y4C0 1643 aa13.73□□□□□ -0.21
VPS35-206ENST00000565228 TRIM26Q12899 539 aaPredicted RBP13.73□□□□□ -0.21
VPS35-206ENST00000565228 SPATA31E1Q6ZUB1 1445 aa13.73□□□□□ -0.21
VPS35-206ENST00000565228 STAG3Q9UJ98 1225 aa13.72□□□□□ -0.21
VPS35-206ENST00000565228 ADAMTS13Q76LX8 1427 aa13.71□□□□□ -0.22
VPS35-206ENST00000565228 DMRT2Q9Y5R5 561 aa13.7□□□□□ -0.22
VPS35-206ENST00000565228 PPLO60437 1756 aa13.69□□□□□ -0.22
VPS35-206ENST00000565228 IFT172Q9UG01 1749 aa13.68□□□□□ -0.22
VPS35-206ENST00000565228 SLC26A8Q96RN1 970 aa13.68□□□□□ -0.22
VPS35-206ENST00000565228 PLEKHG1Q9ULL1 1385 aa13.68□□□□□ -0.22
VPS35-206ENST00000565228 XIRP1Q702N8 1843 aaKnown RBP13.67□□□□□ -0.22
VPS35-206ENST00000565228 CCDC144AA2RUR9 1427 aa13.66□□□□□ -0.22
VPS35-206ENST00000565228 SETD1AO15047 1707 aaKnown RBP13.66□□□□□ -0.22
VPS35-206ENST00000565228 DHX57Q6P158 1386 aaKnown RBP13.66□□□□□ -0.22
VPS35-206ENST00000565228 EID1Q9Y6B2 187 aa13.65□□□□□ -0.22
VPS35-206ENST00000565228 PTPRUQ92729 1446 aa13.64□□□□□ -0.23
VPS35-206ENST00000565228 RGL3Q3MIN7 710 aa13.64□□□□□ -0.23
VPS35-206ENST00000565228 CHD2O14647 1828 aaKnown RBP13.64□□□□□ -0.23
VPS35-206ENST00000565228 ADGRF5Q8IZF2 1346 aa13.64□□□□□ -0.23
VPS35-206ENST00000565228 SETBP1Q9Y6X0 1596 aa13.63□□□□□ -0.23
VPS35-206ENST00000565228 ZNF326Q5BKZ1 582 aaKnown RBP13.63□□□□□ -0.23
VPS35-206ENST00000565228 ALKQ9UM73 1620 aa13.63□□□□□ -0.23
VPS35-206ENST00000565228 LRRC7Q96NW7 1537 aa13.62□□□□□ -0.23
VPS35-206ENST00000565228 NWD1Q149M9 1564 aa13.62□□□□□ -0.23
VPS35-206ENST00000565228 METP08581 1390 aa13.61□□□□□ -0.23
VPS35-206ENST00000565228 RBM33Q96EV2 1170 aaKnown RBP13.61□□□□□ -0.23
VPS35-206ENST00000565228 ACIN1Q9UKV3 1341 aaKnown RBP13.61□□□□□ -0.23
VPS35-206ENST00000565228 ASXL1Q8IXJ9 1541 aa13.6□□□□□ -0.23
VPS35-206ENST00000565228 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.6□□□□□ -0.23
VPS35-206ENST00000565228 SIN3AQ96ST3 1273 aa13.6□□□□□ -0.23
VPS35-206ENST00000565228 PCGF6Q9BYE7 350 aa13.6□□□□□ -0.23
VPS35-206ENST00000565228 PPP1R15AO75807 674 aaPredicted RBP13.59□□□□□ -0.23
VPS35-206ENST00000565228 TBX22Q9Y458 520 aa13.59□□□□□ -0.23
VPS35-206ENST00000565228 NRXN1Q9ULB1 1477 aa13.58□□□□□ -0.24
VPS35-206ENST00000565228 CPS1P31327 1500 aa13.58□□□□□ -0.24
VPS35-206ENST00000565228 RPGRIP1LQ68CZ1 1315 aa13.58□□□□□ -0.24
VPS35-206ENST00000565228 IQSEC2Q5JU85 1478 aa13.57□□□□□ -0.24
VPS35-206ENST00000565228 XRN1Q8IZH2 1706 aaKnown RBP13.57□□□□□ -0.24
VPS35-206ENST00000565228 KCNA6P17658 529 aa13.57□□□□□ -0.24
VPS35-206ENST00000565228 DIP2AQ14689 1571 aa13.57□□□□□ -0.24
VPS35-206ENST00000565228 BCANQ96GW7 911 aa13.56□□□□□ -0.24
VPS35-206ENST00000565228 PIK3C2GO75747 1445 aa13.56□□□□□ -0.24
VPS35-206ENST00000565228 HDGFP51858 240 aaKnown RBP13.54□□□□□ -0.24
VPS35-206ENST00000565228 MYOM2P54296 1465 aa13.54□□□□□ -0.24
VPS35-206ENST00000565228 VGFO15240 615 aaPredicted RBP13.53□□□□□ -0.24
VPS35-206ENST00000565228 AMOTL2Q9Y2J4 779 aa13.53□□□□□ -0.24
VPS35-206ENST00000565228 TMEM94Q12767 1356 aa13.53□□□□□ -0.24
VPS35-206ENST00000565228 NKTRP30414 1462 aaKnown RBP13.51□□□□□ -0.25
VPS35-206ENST00000565228 CFAP70Q5T0N1 1121 aa13.51□□□□□ -0.25
VPS35-206ENST00000565228 TMEM132EQ6IEE7 984 aa13.51□□□□□ -0.25
VPS35-206ENST00000565228 PIK3R4Q99570 1358 aa13.5□□□□□ -0.25
VPS35-206ENST00000565228 ROBO2Q9HCK4 1378 aa13.5□□□□□ -0.25
VPS35-206ENST00000565228 DCAF11Q8TEB1 546 aa13.5□□□□□ -0.25
VPS35-206ENST00000565228 KDM2AQ9Y2K7 1162 aa13.5□□□□□ -0.25
VPS35-206ENST00000565228 ADGRB1O14514 1584 aa13.49□□□□□ -0.25
VPS35-206ENST00000565228 C14orf93Q9H972 538 aaKnown RBP13.49□□□□□ -0.25
VPS35-206ENST00000565228 NEUROD1Q13562 356 aa13.48□□□□□ -0.25
VPS35-206ENST00000565228 PROSER2Q86WR7 435 aaPredicted RBP13.48□□□□□ -0.25
VPS35-206ENST00000565228 L3MBTL2Q969R5 705 aa13.48□□□□□ -0.25
VPS35-206ENST00000565228 PLEKHH1Q9ULM0 1364 aa13.47□□□□□ -0.25
VPS35-206ENST00000565228 POTEDQ86YR6 584 aa13.47□□□□□ -0.25
VPS35-206ENST00000565228 PRAG1Q86YV5 1406 aa13.47□□□□□ -0.25
VPS35-206ENST00000565228 NALCNQ8IZF0 1738 aa13.46□□□□□ -0.25
VPS35-206ENST00000565228 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.46□□□□□ -0.25
VPS35-206ENST00000565228 KNDC1Q76NI1 1749 aa13.44□□□□□ -0.26
VPS35-206ENST00000565228 UBAP1LF5GYI3 381 aa13.44□□□□□ -0.26
VPS35-206ENST00000565228 NBPF1Q3BBV0 1214 aa13.44□□□□□ -0.26
VPS35-206ENST00000565228 NBPF8Q3BBV2 869 aa13.44□□□□□ -0.26
VPS35-206ENST00000565228 TECPR2O15040 1411 aa13.44□□□□□ -0.26
VPS35-206ENST00000565228 YTHDC2Q9H6S0 1430 aaKnown RBP13.44□□□□□ -0.26
VPS35-206ENST00000565228 MED1Q15648 1581 aaPredicted RBP13.44□□□□□ -0.26
VPS35-206ENST00000565228 LRPPRCP42704 1394 aaKnown RBP13.44□□□□□ -0.26
VPS35-206ENST00000565228 PTCH1Q13635 1447 aa13.43□□□□□ -0.26
VPS35-206ENST00000565228 WAPLQ7Z5K2 1190 aa13.43□□□□□ -0.26
VPS35-206ENST00000565228 STK26Q9P289 416 aa13.43□□□□□ -0.26
VPS35-206ENST00000565228 LAMC1P11047 1609 aa13.42□□□□□ -0.26
VPS35-206ENST00000565228 ABCC11Q96J66 1382 aa13.42□□□□□ -0.26
VPS35-206ENST00000565228 PIP4K2BP78356 416 aa13.4□□□□□ -0.26
VPS35-206ENST00000565228 NCOA3Q9Y6Q9 1424 aa13.39□□□□□ -0.27
VPS35-206ENST00000565228 KIAA1210Q9ULL0 1709 aa13.39□□□□□ -0.27
VPS35-206ENST00000565228 TRPM1Q7Z4N2 1603 aa13.39□□□□□ -0.27
VPS35-206ENST00000565228 ADGRL3Q9HAR2 1447 aa13.39□□□□□ -0.27
VPS35-206ENST00000565228 ARHGEF28Q8N1W1 1705 aaKnown RBP13.38□□□□□ -0.27
VPS35-206ENST00000565228 MST1RQ04912 1400 aa13.38□□□□□ -0.27
VPS35-206ENST00000565228 ROBO1Q9Y6N7 1651 aa13.37□□□□□ -0.27
VPS35-206ENST00000565228 C19orf44Q9H6X5 657 aa13.37□□□□□ -0.27
VPS35-206ENST00000565228 DLC1Q96QB1 1528 aa13.37□□□□□ -0.27
VPS35-206ENST00000565228 MSH6P52701 1360 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms