RNA–Protein interactions for RNA: ENST00000561268.5

SPG11-224, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 4

Gene SPG11, Length 530 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-224ENST00000561268 NPHP4O75161 1426 aaPredicted RBP10.71□□□□□ -0.69
SPG11-224ENST00000561268 CHD2O14647 1828 aaKnown RBP10.7□□□□□ -0.7
SPG11-224ENST00000561268 KANK1Q14678 1352 aa10.69□□□□□ -0.7
SPG11-224ENST00000561268 NCKAP5LQ9HCH0 1330 aa10.69□□□□□ -0.7
SPG11-224ENST00000561268 ZNF335Q9H4Z2 1342 aaPredicted RBP10.68□□□□□ -0.7
SPG11-224ENST00000561268 RRP7BPQ9NSQ0 103 aa10.68□□□□□ -0.7
SPG11-224ENST00000561268 ZFYVE9O95405 1425 aa10.67□□□□□ -0.7
SPG11-224ENST00000561268 DIP2AQ14689 1571 aa10.66□□□□□ -0.7
SPG11-224ENST00000561268 THEMISQ8N1K5 641 aaPredicted RBP10.66□□□□□ -0.7
SPG11-224ENST00000561268 NRXN3Q9Y4C0 1643 aa10.66□□□□□ -0.7
SPG11-224ENST00000561268 KIF1BO60333 1816 aa10.65□□□□□ -0.7
SPG11-224ENST00000561268 LRRC7Q96NW7 1537 aa10.65□□□□□ -0.7
SPG11-224ENST00000561268 ZNF219Q9P2Y4 722 aaPredicted RBP10.65□□□□□ -0.7
SPG11-224ENST00000561268 TMEM2Q9UHN6 1383 aa10.65□□□□□ -0.71
SPG11-224ENST00000561268 SLC4A2P04920 1241 aa10.64□□□□□ -0.71
SPG11-224ENST00000561268 SETD1AO15047 1707 aaKnown RBP10.64□□□□□ -0.71
SPG11-224ENST00000561268 TRPM2O94759 1503 aa10.63□□□□□ -0.71
SPG11-224ENST00000561268 NKTRP30414 1462 aaKnown RBP10.63□□□□□ -0.71
SPG11-224ENST00000561268 CLTCL1P53675 1640 aa10.63□□□□□ -0.71
SPG11-224ENST00000561268 CHIC2Q9UKJ5 165 aa10.63□□□□□ -0.71
SPG11-224ENST00000561268 XRN1Q8IZH2 1706 aaKnown RBP10.62□□□□□ -0.71
SPG11-224ENST00000561268 FAM50AQ14320 339 aaKnown RBP10.62□□□□□ -0.71
SPG11-224ENST00000561268 ANKLE2Q86XL3 938 aa10.62□□□□□ -0.71
SPG11-224ENST00000561268 IFT172Q9UG01 1749 aa10.61□□□□□ -0.71
SPG11-224ENST00000561268 HFM1A2PYH4 1435 aa10.61□□□□□ -0.71
SPG11-224ENST00000561268 NAIPQ13075 1403 aa10.61□□□□□ -0.71
SPG11-224ENST00000561268 SETBP1Q9Y6X0 1596 aa10.6□□□□□ -0.71
SPG11-224ENST00000561268 PPLO60437 1756 aa10.6□□□□□ -0.71
SPG11-224ENST00000561268 NEXMIFQ5QGS0 1516 aa10.58□□□□□ -0.72
SPG11-224ENST00000561268 LTKP29376 864 aa10.58□□□□□ -0.72
SPG11-224ENST00000561268 PLEKHG1Q9ULL1 1385 aa10.57□□□□□ -0.72
SPG11-224ENST00000561268 IDI1Q13907 227 aa10.57□□□□□ -0.72
SPG11-224ENST00000561268 SLC52A1Q9NWF4 448 aa10.57□□□□□ -0.72
SPG11-224ENST00000561268 MED1Q15648 1581 aaPredicted RBP10.56□□□□□ -0.72
SPG11-224ENST00000561268 ROBO1Q9Y6N7 1651 aa10.55□□□□□ -0.72
SPG11-224ENST00000561268 KCNA4P22459 653 aa10.55□□□□□ -0.72
SPG11-224ENST00000561268 ADAMTS13Q76LX8 1427 aa10.55□□□□□ -0.72
SPG11-224ENST00000561268 RIMS2Q9UQ26 1411 aa10.55□□□□□ -0.72
SPG11-224ENST00000561268 NUP155O75694 1391 aa10.53□□□□□ -0.72
SPG11-224ENST00000561268 NALCNQ8IZF0 1738 aa10.53□□□□□ -0.72
SPG11-224ENST00000561268 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.53□□□□□ -0.72
SPG11-224ENST00000561268 PRAG1Q86YV5 1406 aa10.52□□□□□ -0.73
SPG11-224ENST00000561268 TXNDC2Q86VQ3 553 aa10.52□□□□□ -0.73
SPG11-224ENST00000561268 KNDC1Q76NI1 1749 aa10.51□□□□□ -0.73
SPG11-224ENST00000561268 PIK3R4Q99570 1358 aa10.51□□□□□ -0.73
SPG11-224ENST00000561268 EID1Q9Y6B2 187 aa10.5□□□□□ -0.73
SPG11-224ENST00000561268 NCOA3Q9Y6Q9 1424 aa10.5□□□□□ -0.73
SPG11-224ENST00000561268 LAMC1P11047 1609 aa10.49□□□□□ -0.73
SPG11-224ENST00000561268 COL16A1Q07092 1604 aaPredicted RBP10.49□□□□□ -0.73
SPG11-224ENST00000561268 NHSL1Q5SYE7 1610 aa10.49□□□□□ -0.73
SPG11-224ENST00000561268 UBAP1LF5GYI3 381 aa10.49□□□□□ -0.73
SPG11-224ENST00000561268 PHLPP1O60346 1717 aa10.48□□□□□ -0.73
SPG11-224ENST00000561268 AHDC1Q5TGY3 1603 aaPredicted RBP10.47□□□□□ -0.73
SPG11-224ENST00000561268 SHPRHQ149N8 1683 aa10.47□□□□□ -0.73
SPG11-224ENST00000561268 SAMD1Q6SPF0 538 aaPredicted RBP10.47□□□□□ -0.73
SPG11-224ENST00000561268 TMEM94Q12767 1356 aa10.47□□□□□ -0.73
SPG11-224ENST00000561268 TOM1O60784 492 aa10.46□□□□□ -0.73
SPG11-224ENST00000561268 KCNA6P17658 529 aa10.46□□□□□ -0.73
SPG11-224ENST00000561268 PPARGC1BQ86YN6 1023 aaKnown RBP10.46□□□□□ -0.73
SPG11-224ENST00000561268 RBM42Q9BTD8 480 aaKnown RBP10.46□□□□□ -0.73
SPG11-224ENST00000561268 DCCP43146 1447 aa10.46□□□□□ -0.74
SPG11-224ENST00000561268 FAM135BQ49AJ0 1406 aa10.46□□□□□ -0.74
SPG11-224ENST00000561268 PTPRUQ92729 1446 aa10.46□□□□□ -0.74
SPG11-224ENST00000561268 STAG3Q9UJ98 1225 aa10.45□□□□□ -0.74
SPG11-224ENST00000561268 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.44□□□□□ -0.74
SPG11-224ENST00000561268 TBX22Q9Y458 520 aa10.44□□□□□ -0.74
SPG11-224ENST00000561268 ASXL1Q8IXJ9 1541 aa10.43□□□□□ -0.74
SPG11-224ENST00000561268 PTCH1Q13635 1447 aa10.43□□□□□ -0.74
SPG11-224ENST00000561268 SPATA31E1Q6ZUB1 1445 aa10.43□□□□□ -0.74
SPG11-224ENST00000561268 ITGAEP38570 1179 aa10.43□□□□□ -0.74
SPG11-224ENST00000561268 SLC26A8Q96RN1 970 aa10.42□□□□□ -0.74
SPG11-224ENST00000561268 CDC42BPGQ6DT37 1551 aa10.41□□□□□ -0.74
SPG11-224ENST00000561268 HSPA1LP34931 641 aa10.41□□□□□ -0.74
SPG11-224ENST00000561268 MSH6P52701 1360 aa10.4□□□□□ -0.74
SPG11-224ENST00000561268 DISP3Q9P2K9 1392 aa10.4□□□□□ -0.74
SPG11-224ENST00000561268 HDGFP51858 240 aaKnown RBP10.4□□□□□ -0.74
SPG11-224ENST00000561268 NRXN1Q9ULB1 1477 aa10.4□□□□□ -0.74
SPG11-224ENST00000561268 ADGRL3Q9HAR2 1447 aa10.4□□□□□ -0.75
SPG11-224ENST00000561268 MYOM2P54296 1465 aa10.39□□□□□ -0.75
SPG11-224ENST00000561268 CHRDL2Q6WN34 429 aa10.39□□□□□ -0.75
SPG11-224ENST00000561268 TECPR2O15040 1411 aa10.38□□□□□ -0.75
SPG11-224ENST00000561268 FMN2Q9NZ56 1722 aa10.38□□□□□ -0.75
SPG11-224ENST00000561268 METP08581 1390 aa10.38□□□□□ -0.75
SPG11-224ENST00000561268 CCDC144AA2RUR9 1427 aa10.37□□□□□ -0.75
SPG11-224ENST00000561268 PIK3C2GO75747 1445 aa10.37□□□□□ -0.75
SPG11-224ENST00000561268 PPP1R15AO75807 674 aaPredicted RBP10.37□□□□□ -0.75
SPG11-224ENST00000561268 PIP4K2BP78356 416 aa10.37□□□□□ -0.75
SPG11-224ENST00000561268 MST1RQ04912 1400 aa10.37□□□□□ -0.75
SPG11-224ENST00000561268 ACIN1Q9UKV3 1341 aaKnown RBP10.36□□□□□ -0.75
SPG11-224ENST00000561268 MARF1Q9Y4F3 1742 aaKnown RBP10.36□□□□□ -0.75
SPG11-224ENST00000561268 SETD5Q9C0A6 1442 aa10.36□□□□□ -0.75
SPG11-224ENST00000561268 ILDR2Q71H61 639 aa10.35□□□□□ -0.75
SPG11-224ENST00000561268 PROSER2Q86WR7 435 aaPredicted RBP10.35□□□□□ -0.75
SPG11-224ENST00000561268 COL22A1Q8NFW1 1626 aaPredicted RBP10.35□□□□□ -0.75
SPG11-224ENST00000561268 ADGRB2O60241 1585 aa10.35□□□□□ -0.75
SPG11-224ENST00000561268 RPGRIP1LQ68CZ1 1315 aa10.34□□□□□ -0.75
SPG11-224ENST00000561268 CHGAP10645 457 aaKnown RBP10.34□□□□□ -0.75
SPG11-224ENST00000561268 HRCP23327 699 aa10.34□□□□□ -0.75
SPG11-224ENST00000561268 SLC4A1APQ9BWU0 796 aaKnown RBP10.34□□□□□ -0.75
SPG11-224ENST00000561268 KIF1AQ12756 1690 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms