RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 STAG3Q9UJ98 1225 aa13.92□□□□□ -0.18
CUX1-216ENST00000558469 CEP170BQ9Y4F5 1589 aaPredicted RBP13.92□□□□□ -0.18
CUX1-216ENST00000558469 RGL3Q3MIN7 710 aa13.91□□□□□ -0.18
CUX1-216ENST00000558469 SPATA31E1Q6ZUB1 1445 aa13.9□□□□□ -0.18
CUX1-216ENST00000558469 IFT172Q9UG01 1749 aa13.9□□□□□ -0.18
CUX1-216ENST00000558469 A2ML1A8K2U0 1454 aa13.9□□□□□ -0.18
CUX1-216ENST00000558469 NEURL4Q96JN8 1562 aa13.9□□□□□ -0.18
CUX1-216ENST00000558469 PPLO60437 1756 aa13.9□□□□□ -0.18
CUX1-216ENST00000558469 TONSLQ96HA7 1378 aa13.89□□□□□ -0.19
CUX1-216ENST00000558469 ZNF326Q5BKZ1 582 aaKnown RBP13.89□□□□□ -0.19
CUX1-216ENST00000558469 UHRF1BP1Q6BDS2 1440 aa13.89□□□□□ -0.19
CUX1-216ENST00000558469 L3MBTL2Q969R5 705 aa13.86□□□□□ -0.19
CUX1-216ENST00000558469 THEMISQ8N1K5 641 aaPredicted RBP13.85□□□□□ -0.19
CUX1-216ENST00000558469 DCAF11Q8TEB1 546 aa13.85□□□□□ -0.19
CUX1-216ENST00000558469 KDM2AQ9Y2K7 1162 aa13.85□□□□□ -0.19
CUX1-216ENST00000558469 NEXMIFQ5QGS0 1516 aa13.85□□□□□ -0.19
CUX1-216ENST00000558469 TIMELESSQ9UNS1 1208 aa13.84□□□□□ -0.19
CUX1-216ENST00000558469 RPGRIP1LQ68CZ1 1315 aa13.84□□□□□ -0.19
CUX1-216ENST00000558469 RIMS2Q9UQ26 1411 aa13.82□□□□□ -0.2
CUX1-216ENST00000558469 NUTM2DQ5VT03 806 aaPredicted RBP13.82□□□□□ -0.2
CUX1-216ENST00000558469 POLR1AO95602 1720 aaPredicted RBP13.81□□□□□ -0.2
CUX1-216ENST00000558469 SLIT1O75093 1534 aa13.81□□□□□ -0.2
CUX1-216ENST00000558469 TMEM2Q9UHN6 1383 aa13.81□□□□□ -0.2
CUX1-216ENST00000558469 LMTK3Q96Q04 1460 aa13.8□□□□□ -0.2
CUX1-216ENST00000558469 ZEB1P37275 1124 aaPredicted RBP13.8□□□□□ -0.2
CUX1-216ENST00000558469 ZFYVE9O95405 1425 aa13.8□□□□□ -0.2
CUX1-216ENST00000558469 ARHGAP23Q9P227 1491 aa13.8□□□□□ -0.2
CUX1-216ENST00000558469 VGFO15240 615 aaPredicted RBP13.79□□□□□ -0.2
CUX1-216ENST00000558469 HDGFP51858 240 aaKnown RBP13.79□□□□□ -0.2
CUX1-216ENST00000558469 MYOM2P54296 1465 aa13.79□□□□□ -0.2
CUX1-216ENST00000558469 PPP1R15AO75807 674 aaPredicted RBP13.78□□□□□ -0.2
CUX1-216ENST00000558469 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.78□□□□□ -0.2
CUX1-216ENST00000558469 EID1Q9Y6B2 187 aa13.78□□□□□ -0.2
CUX1-216ENST00000558469 LTKP29376 864 aa13.77□□□□□ -0.21
CUX1-216ENST00000558469 HSPA2P54652 639 aa13.77□□□□□ -0.21
CUX1-216ENST00000558469 TXNDC2Q86VQ3 553 aa13.77□□□□□ -0.21
CUX1-216ENST00000558469 ADGRF5Q8IZF2 1346 aa13.77□□□□□ -0.21
CUX1-216ENST00000558469 STAC3Q96MF2 364 aa13.77□□□□□ -0.21
CUX1-216ENST00000558469 IQGAP1P46940 1657 aa13.76□□□□□ -0.21
CUX1-216ENST00000558469 ANKLE2Q86XL3 938 aa13.76□□□□□ -0.21
CUX1-216ENST00000558469 RNF39Q9H2S5 420 aa13.76□□□□□ -0.21
CUX1-216ENST00000558469 TRPM1Q7Z4N2 1603 aa13.75□□□□□ -0.21
CUX1-216ENST00000558469 SCAF11Q99590 1463 aaKnown RBP13.75□□□□□ -0.21
CUX1-216ENST00000558469 NRXN1Q9ULB1 1477 aa13.75□□□□□ -0.21
CUX1-216ENST00000558469 PRAG1Q86YV5 1406 aa13.75□□□□□ -0.21
CUX1-216ENST00000558469 NBPF8Q3BBV2 869 aa13.75□□□□□ -0.21
CUX1-216ENST00000558469 STRCQ7RTU9 1775 aa13.75□□□□□ -0.21
CUX1-216ENST00000558469 KIAA1210Q9ULL0 1709 aa13.75□□□□□ -0.21
CUX1-216ENST00000558469 BCANQ96GW7 911 aa13.74□□□□□ -0.21
CUX1-216ENST00000558469 NRXN3Q9Y4C0 1643 aa13.74□□□□□ -0.21
CUX1-216ENST00000558469 PIK3C2GO75747 1445 aa13.73□□□□□ -0.21
CUX1-216ENST00000558469 NCKAP5LQ9HCH0 1330 aa13.73□□□□□ -0.21
CUX1-216ENST00000558469 LAMC1P11047 1609 aa13.73□□□□□ -0.21
CUX1-216ENST00000558469 PLEKHG1Q9ULL1 1385 aa13.72□□□□□ -0.21
CUX1-216ENST00000558469 SETD1AO15047 1707 aaKnown RBP13.72□□□□□ -0.21
CUX1-216ENST00000558469 ALKQ9UM73 1620 aa13.72□□□□□ -0.21
CUX1-216ENST00000558469 SETBP1Q9Y6X0 1596 aa13.71□□□□□ -0.21
CUX1-216ENST00000558469 CFAP70Q5T0N1 1121 aa13.7□□□□□ -0.22
CUX1-216ENST00000558469 MED14O60244 1454 aa13.69□□□□□ -0.22
CUX1-216ENST00000558469 NPHP4O75161 1426 aaPredicted RBP13.69□□□□□ -0.22
CUX1-216ENST00000558469 C14orf93Q9H972 538 aaKnown RBP13.68□□□□□ -0.22
CUX1-216ENST00000558469 RALGAPBQ86X10 1494 aa13.67□□□□□ -0.22
CUX1-216ENST00000558469 DIP2AQ14689 1571 aa13.67□□□□□ -0.22
CUX1-216ENST00000558469 CACNB1Q02641 598 aaPredicted RBP13.67□□□□□ -0.22
CUX1-216ENST00000558469 NBPF1Q3BBV0 1214 aa13.67□□□□□ -0.22
CUX1-216ENST00000558469 SLC26A8Q96RN1 970 aa13.67□□□□□ -0.22
CUX1-216ENST00000558469 ROCK2O75116 1388 aaKnown RBP13.67□□□□□ -0.22
CUX1-216ENST00000558469 ADAMTS13Q76LX8 1427 aa13.66□□□□□ -0.22
CUX1-216ENST00000558469 CHD2O14647 1828 aaKnown RBP13.66□□□□□ -0.22
CUX1-216ENST00000558469 TMEM132EQ6IEE7 984 aa13.65□□□□□ -0.22
CUX1-216ENST00000558469 ADGRB1O14514 1584 aa13.64□□□□□ -0.23
CUX1-216ENST00000558469 TBX22Q9Y458 520 aa13.64□□□□□ -0.23
CUX1-216ENST00000558469 ASXL1Q8IXJ9 1541 aa13.64□□□□□ -0.23
CUX1-216ENST00000558469 METP08581 1390 aa13.63□□□□□ -0.23
CUX1-216ENST00000558469 CARD11Q9BXL7 1154 aa13.63□□□□□ -0.23
CUX1-216ENST00000558469 GPRASP1Q5JY77 1395 aa13.61□□□□□ -0.23
CUX1-216ENST00000558469 STK26Q9P289 416 aa13.61□□□□□ -0.23
CUX1-216ENST00000558469 KNDC1Q76NI1 1749 aa13.61□□□□□ -0.23
CUX1-216ENST00000558469 ARHGEF28Q8N1W1 1705 aaKnown RBP13.61□□□□□ -0.23
CUX1-216ENST00000558469 YTHDC2Q9H6S0 1430 aaKnown RBP13.6□□□□□ -0.23
CUX1-216ENST00000558469 STRCP1A6NGW2 1772 aa13.59□□□□□ -0.23
CUX1-216ENST00000558469 TRAK1Q9UPV9 953 aa13.59□□□□□ -0.23
CUX1-216ENST00000558469 XRN1Q8IZH2 1706 aaKnown RBP13.59□□□□□ -0.23
CUX1-216ENST00000558469 PTPRUQ92729 1446 aa13.58□□□□□ -0.24
CUX1-216ENST00000558469 LRPPRCP42704 1394 aaKnown RBP13.58□□□□□ -0.24
CUX1-216ENST00000558469 PIK3R4Q99570 1358 aa13.58□□□□□ -0.24
CUX1-216ENST00000558469 C1QBPQ07021 282 aaKnown RBP13.57□□□□□ -0.24
CUX1-216ENST00000558469 AMOTL2Q9Y2J4 779 aa13.57□□□□□ -0.24
CUX1-216ENST00000558469 USP47Q96K76 1375 aa13.57□□□□□ -0.24
CUX1-216ENST00000558469 QRICH2Q9H0J4 1663 aa13.56□□□□□ -0.24
CUX1-216ENST00000558469 EIF4G2P78344 907 aaKnown RBP eCLIP13.56□□□□□ -0.241e-6■■■■■ 34
CUX1-216ENST00000558469 CPS1P31327 1500 aa13.55□□□□□ -0.24
CUX1-216ENST00000558469 NWD1Q149M9 1564 aa13.55□□□□□ -0.24
CUX1-216ENST00000558469 ABCC11Q96J66 1382 aa13.55□□□□□ -0.24
CUX1-216ENST00000558469 DLC1Q96QB1 1528 aa13.54□□□□□ -0.24
CUX1-216ENST00000558469 HSPA5P11021 654 aaKnown RBP13.54□□□□□ -0.24
CUX1-216ENST00000558469 KCNA6P17658 529 aa13.54□□□□□ -0.24
CUX1-216ENST00000558469 HIRIP3Q9BW71 556 aaPredicted RBP13.54□□□□□ -0.24
CUX1-216ENST00000558469 EIF3AQ14152 1382 aaKnown RBP13.54□□□□□ -0.24
CUX1-216ENST00000558469 TECPR2O15040 1411 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms