RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 ADGRL1O94910 1474 aa17.91■□□□□ 0.46
SHMT2-222ENST00000555774 ASXL1Q8IXJ9 1541 aa17.91■□□□□ 0.46
SHMT2-222ENST00000555774 MROH1Q8NDA8 1641 aa17.9■□□□□ 0.46
SHMT2-222ENST00000555774 PIK3C2GO75747 1445 aa17.9■□□□□ 0.46
SHMT2-222ENST00000555774 AMER1Q5JTC6 1135 aaPredicted RBP17.89■□□□□ 0.45
SHMT2-222ENST00000555774 MYT1LQ9UL68 1186 aa17.89■□□□□ 0.45
SHMT2-222ENST00000555774 LMTK2Q8IWU2 1503 aa17.89■□□□□ 0.45
SHMT2-222ENST00000555774 EXOC6Q8TAG9 804 aa17.88■□□□□ 0.45
SHMT2-222ENST00000555774 MAP3K4Q9Y6R4 1608 aa17.88■□□□□ 0.45
SHMT2-222ENST00000555774 PPP2R1AP30153 589 aa17.88■□□□□ 0.45
SHMT2-222ENST00000555774 EFCAB6Q5THR3 1501 aa17.88■□□□□ 0.45
SHMT2-222ENST00000555774 KDM5AP29375 1690 aaKnown RBP17.87■□□□□ 0.45
SHMT2-222ENST00000555774 MYOM1P52179 1685 aa17.87■□□□□ 0.45
SHMT2-222ENST00000555774 SALL2Q9Y467 1007 aaPredicted RBP17.87■□□□□ 0.45
SHMT2-222ENST00000555774 TCERG1O14776 1098 aaKnown RBP17.86■□□□□ 0.45
SHMT2-222ENST00000555774 CDCA7LQ96GN5 454 aa17.86■□□□□ 0.45
SHMT2-222ENST00000555774 KIF3BO15066 747 aa17.85■□□□□ 0.45
SHMT2-222ENST00000555774 ANP32AP39687 249 aaKnown RBP17.85■□□□□ 0.45
SHMT2-222ENST00000555774 WDR43Q15061 677 aaKnown RBP eCLIP17.84■□□□□ 0.45
SHMT2-222ENST00000555774 NOP58Q9Y2X3 529 aaKnown RBP17.84■□□□□ 0.45
SHMT2-222ENST00000555774 NRXN1Q9ULB1 1477 aa17.84■□□□□ 0.45
SHMT2-222ENST00000555774 ABCA6Q8N139 1617 aa17.84■□□□□ 0.45
SHMT2-222ENST00000555774 IFT172Q9UG01 1749 aa17.84■□□□□ 0.45
SHMT2-222ENST00000555774 ADAMTS8Q9UP79 889 aa17.83■□□□□ 0.45
SHMT2-222ENST00000555774 KIF1BO60333 1816 aa17.83■□□□□ 0.44
SHMT2-222ENST00000555774 ASXL2Q76L83 1435 aa17.83■□□□□ 0.44
SHMT2-222ENST00000555774 MS4A1P11836 297 aa17.82■□□□□ 0.44
SHMT2-222ENST00000555774 MYO3AQ8NEV4 1616 aa17.82■□□□□ 0.44
SHMT2-222ENST00000555774 ZNF518AQ6AHZ1 1483 aa17.82■□□□□ 0.44
SHMT2-222ENST00000555774 SBNO2Q9Y2G9 1366 aa17.81■□□□□ 0.44
SHMT2-222ENST00000555774 KIDINS220Q9ULH0 1771 aa17.81■□□□□ 0.44
SHMT2-222ENST00000555774 CFAP74Q9C0B2 1584 aa17.8■□□□□ 0.44
SHMT2-222ENST00000555774 IPO9Q96P70 1041 aaKnown RBP17.8■□□□□ 0.44
SHMT2-222ENST00000555774 ERVK-7P63135 1459 aa17.8■□□□□ 0.44
SHMT2-222ENST00000555774 PPRC1Q5VV67 1664 aaKnown RBP17.8■□□□□ 0.44
SHMT2-222ENST00000555774 ZNF521Q96K83 1311 aa17.8■□□□□ 0.44
SHMT2-222ENST00000555774 SETBP1Q9Y6X0 1596 aa17.79■□□□□ 0.44
SHMT2-222ENST00000555774 ADGRB3O60242 1522 aa17.79■□□□□ 0.44
SHMT2-222ENST00000555774 UGGT1Q9NYU2 1555 aa17.78■□□□□ 0.44
SHMT2-222ENST00000555774 PLEKHH1Q9ULM0 1364 aa17.77■□□□□ 0.44
SHMT2-222ENST00000555774 MROH2AA6NES4 1674 aa17.76■□□□□ 0.43
SHMT2-222ENST00000555774 CFAP70Q5T0N1 1121 aa17.76■□□□□ 0.43
SHMT2-222ENST00000555774 NGEFQ8N5V2 710 aa17.76■□□□□ 0.43
SHMT2-222ENST00000555774 ADGRF5Q8IZF2 1346 aa17.75■□□□□ 0.43
SHMT2-222ENST00000555774 GOLGA2Q08379 1002 aa17.75■□□□□ 0.43
SHMT2-222ENST00000555774 DUSP27Q5VZP5 1158 aa17.75■□□□□ 0.43
SHMT2-222ENST00000555774 CRBNQ96SW2 442 aa17.75■□□□□ 0.43
SHMT2-222ENST00000555774 MLH3Q9UHC1 1453 aa17.74■□□□□ 0.43
SHMT2-222ENST00000555774 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.73■□□□□ 0.43
SHMT2-222ENST00000555774 POGZQ7Z3K3 1410 aa17.73■□□□□ 0.43
SHMT2-222ENST00000555774 PLIN1O60240 522 aa17.71■□□□□ 0.43
SHMT2-222ENST00000555774 PDE4AP27815 886 aa17.71■□□□□ 0.43
SHMT2-222ENST00000555774 TRMT2AQ8IZ69 625 aaKnown RBP17.71■□□□□ 0.43
SHMT2-222ENST00000555774 ZBTB47Q9UFB7 747 aaPredicted RBP17.71■□□□□ 0.43
SHMT2-222ENST00000555774 SLFN5Q08AF3 891 aa17.7■□□□□ 0.42
SHMT2-222ENST00000555774 BACH2Q9BYV9 841 aa17.7■□□□□ 0.42
SHMT2-222ENST00000555774 NOS1P29475 1434 aa17.7■□□□□ 0.42
SHMT2-222ENST00000555774 FRMPD1Q5SYB0 1578 aa17.7■□□□□ 0.42
SHMT2-222ENST00000555774 RPGRIP1LQ68CZ1 1315 aa17.69■□□□□ 0.42
SHMT2-222ENST00000555774 HECW2Q9P2P5 1572 aa17.69■□□□□ 0.42
SHMT2-222ENST00000555774 CENPJQ9HC77 1338 aaPredicted RBP17.69■□□□□ 0.42
SHMT2-222ENST00000555774 POLR3AO14802 1390 aaPredicted RBP17.69■□□□□ 0.42
SHMT2-222ENST00000555774 PAK3O75914 559 aaPredicted RBP17.69■□□□□ 0.42
SHMT2-222ENST00000555774 NPATQ14207 1427 aa17.68■□□□□ 0.42
SHMT2-222ENST00000555774 PPLO60437 1756 aa17.68■□□□□ 0.42
SHMT2-222ENST00000555774 NPM1P06748 294 aaKnown RBP eCLIP17.67■□□□□ 0.42
SHMT2-222ENST00000555774 ZC3H13Q5T200 1668 aaKnown RBP17.67■□□□□ 0.42
SHMT2-222ENST00000555774 CD109Q6YHK3 1445 aa17.67■□□□□ 0.42
SHMT2-222ENST00000555774 KDM2BQ8NHM5 1336 aa17.67■□□□□ 0.42
SHMT2-222ENST00000555774 NKTRP30414 1462 aaKnown RBP17.67■□□□□ 0.42
SHMT2-222ENST00000555774 ADGRB1O14514 1584 aa17.66■□□□□ 0.42
SHMT2-222ENST00000555774 CENPQQ7L2Z9 268 aaPredicted RBP17.66■□□□□ 0.42
SHMT2-222ENST00000555774 CARD14Q9BXL6 1004 aa17.66■□□□□ 0.42
SHMT2-222ENST00000555774 C14orf93Q9H972 538 aaKnown RBP17.66■□□□□ 0.42
SHMT2-222ENST00000555774 USP32Q8NFA0 1604 aa17.65■□□□□ 0.42
SHMT2-222ENST00000555774 ABCC3O15438 1527 aa17.65■□□□□ 0.42
SHMT2-222ENST00000555774 E9PSI1 815 aa17.65■□□□□ 0.42
SHMT2-222ENST00000555774 C20orf194Q5TEA3 1177 aa17.64■□□□□ 0.41
SHMT2-222ENST00000555774 PUS7Q96PZ0 661 aaKnown RBP17.64■□□□□ 0.41
SHMT2-222ENST00000555774 QRICH2Q9H0J4 1663 aa17.63■□□□□ 0.41
SHMT2-222ENST00000555774 APAF1O14727 1248 aa17.62■□□□□ 0.41
SHMT2-222ENST00000555774 NEO1Q92859 1461 aa17.62■□□□□ 0.41
SHMT2-222ENST00000555774 NINLQ9Y2I6 1382 aa17.61■□□□□ 0.41
SHMT2-222ENST00000555774 CCDC146Q8IYE0 955 aa17.61■□□□□ 0.41
SHMT2-222ENST00000555774 CAMSAP1Q5T5Y3 1602 aa17.61■□□□□ 0.41
SHMT2-222ENST00000555774 NSD3Q9BZ95 1437 aa17.61■□□□□ 0.41
SHMT2-222ENST00000555774 PIK3C2BO00750 1634 aa17.6■□□□□ 0.41
SHMT2-222ENST00000555774 CHGAP10645 457 aaKnown RBP17.59■□□□□ 0.41
SHMT2-222ENST00000555774 DDRGK1Q96HY6 314 aa17.58■□□□□ 0.4
SHMT2-222ENST00000555774 ARHGAP31Q2M1Z3 1444 aa17.57■□□□□ 0.4
SHMT2-222ENST00000555774 SHPRHQ149N8 1683 aa17.57■□□□□ 0.4
SHMT2-222ENST00000555774 MORC1Q86VD1 984 aa17.56■□□□□ 0.4
SHMT2-222ENST00000555774 NSD2O96028 1365 aa17.56■□□□□ 0.4
SHMT2-222ENST00000555774 GLI2P10070 1586 aa17.56■□□□□ 0.4
SHMT2-222ENST00000555774 GGT6Q6P531 493 aa17.56■□□□□ 0.4
SHMT2-222ENST00000555774 NPM2Q86SE8 214 aaKnown RBP17.56■□□□□ 0.4
SHMT2-222ENST00000555774 TRAK1Q9UPV9 953 aa17.56■□□□□ 0.4
SHMT2-222ENST00000555774 NCBP3Q53F19 620 aaKnown RBP17.55■□□□□ 0.4
SHMT2-222ENST00000555774 BCL11AQ9H165 835 aa17.55■□□□□ 0.4
SHMT2-222ENST00000555774 SPINK5Q9NQ38 1064 aaPredicted RBP17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms