RNA–Protein interactions for RNA: ENST00000555353.5

FOXN3-209, Transcript of forkhead box N3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene FOXN3, Length 1,595 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3-209ENST00000555353 RIMS2Q9UQ26 1411 aa30.25■■■□□ 2.43
FOXN3-209ENST00000555353 ZFYVE9O95405 1425 aa30.23■■■□□ 2.43
FOXN3-209ENST00000555353 CCDC144AA2RUR9 1427 aa30.22■■■□□ 2.43
FOXN3-209ENST00000555353 PPP1R15AO75807 674 aaPredicted RBP30.21■■■□□ 2.43
FOXN3-209ENST00000555353 ZNF326Q5BKZ1 582 aaKnown RBP30.21■■■□□ 2.43
FOXN3-209ENST00000555353 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.2■■■□□ 2.43
FOXN3-209ENST00000555353 ZNF335Q9H4Z2 1342 aaPredicted RBP30.17■■■□□ 2.42
FOXN3-209ENST00000555353 BCANQ96GW7 911 aa30.16■■■□□ 2.42
FOXN3-209ENST00000555353 NUTM2DQ5VT03 806 aaPredicted RBP30.15■■■□□ 2.42
FOXN3-209ENST00000555353 PLEKHG1Q9ULL1 1385 aa30.12■■■□□ 2.41
FOXN3-209ENST00000555353 LTBP4Q8N2S1 1624 aa30.12■■■□□ 2.41
FOXN3-209ENST00000555353 SENP3Q9H4L4 574 aaPredicted RBP30.1■■■□□ 2.41
FOXN3-209ENST00000555353 CERKQ8TCT0 537 aa30.09■■■□□ 2.41
FOXN3-209ENST00000555353 SLC26A8Q96RN1 970 aa30.08■■■□□ 2.41
FOXN3-209ENST00000555353 NEXMIFQ5QGS0 1516 aa30.08■■■□□ 2.41
FOXN3-209ENST00000555353 ANKRD30BQ9BXX2 1392 aa30.07■■■□□ 2.4
FOXN3-209ENST00000555353 RPGRIP1LQ68CZ1 1315 aa30.05■■■□□ 2.4
FOXN3-209ENST00000555353 RGL3Q3MIN7 710 aa30.03■■■□□ 2.4
FOXN3-209ENST00000555353 SPATA31E1Q6ZUB1 1445 aa30.03■■■□□ 2.4
FOXN3-209ENST00000555353 CPS1P31327 1500 aa30.02■■■□□ 2.4
FOXN3-209ENST00000555353 PPLO60437 1756 aa30.02■■■□□ 2.4
FOXN3-209ENST00000555353 VGFO15240 615 aaPredicted RBP30■■■□□ 2.39
FOXN3-209ENST00000555353 STRCP1A6NGW2 1772 aa29.99■■■□□ 2.39
FOXN3-209ENST00000555353 DIP2AQ14689 1571 aa29.98■■■□□ 2.39
FOXN3-209ENST00000555353 TBX22Q9Y458 520 aa29.98■■■□□ 2.39
FOXN3-209ENST00000555353 ADAMTS13Q76LX8 1427 aa29.97■■■□□ 2.39
FOXN3-209ENST00000555353 SETBP1Q9Y6X0 1596 aa29.96■■■□□ 2.39
FOXN3-209ENST00000555353 NRXN3Q9Y4C0 1643 aa29.94■■■□□ 2.38
FOXN3-209ENST00000555353 IQSEC2Q5JU85 1478 aa29.94■■■□□ 2.38
FOXN3-209ENST00000555353 IFT172Q9UG01 1749 aa29.94■■■□□ 2.38
FOXN3-209ENST00000555353 KCNA6P17658 529 aa29.93■■■□□ 2.38
FOXN3-209ENST00000555353 CHD2O14647 1828 aaKnown RBP29.91■■■□□ 2.38
FOXN3-209ENST00000555353 NWD1Q149M9 1564 aa29.88■■■□□ 2.37
FOXN3-209ENST00000555353 PIK3R4Q99570 1358 aa29.88■■■□□ 2.37
FOXN3-209ENST00000555353 LRRC7Q96NW7 1537 aa29.87■■■□□ 2.37
FOXN3-209ENST00000555353 FBXO41Q8TF61 875 aa29.86■■■□□ 2.37
FOXN3-209ENST00000555353 DHX57Q6P158 1386 aaKnown RBP29.86■■■□□ 2.37
FOXN3-209ENST00000555353 NKTRP30414 1462 aaKnown RBP29.84■■■□□ 2.37
FOXN3-209ENST00000555353 ADGRF5Q8IZF2 1346 aa29.84■■■□□ 2.37
FOXN3-209ENST00000555353 ALKQ9UM73 1620 aa29.81■■■□□ 2.36
FOXN3-209ENST00000555353 PROSER2Q86WR7 435 aaPredicted RBP29.81■■■□□ 2.36
FOXN3-209ENST00000555353 METP08581 1390 aa29.8■■■□□ 2.36
FOXN3-209ENST00000555353 MYOM2P54296 1465 aa29.8■■■□□ 2.36
FOXN3-209ENST00000555353 SETD1AO15047 1707 aaKnown RBP29.79■■■□□ 2.36
FOXN3-209ENST00000555353 AMOTL2Q9Y2J4 779 aa29.78■■■□□ 2.36
FOXN3-209ENST00000555353 XIRP1Q702N8 1843 aaKnown RBP29.78■■■□□ 2.36
FOXN3-209ENST00000555353 PIK3C2GO75747 1445 aa29.77■■■□□ 2.36
FOXN3-209ENST00000555353 PTPRUQ92729 1446 aa29.77■■■□□ 2.36
FOXN3-209ENST00000555353 ILDR1Q86SU0 546 aaPredicted RBP29.77■■■□□ 2.36
FOXN3-209ENST00000555353 DCAF11Q8TEB1 546 aa29.77■■■□□ 2.36
FOXN3-209ENST00000555353 TMEM94Q12767 1356 aa29.76■■■□□ 2.36
FOXN3-209ENST00000555353 UBAP1LF5GYI3 381 aa29.74■■■□□ 2.35
FOXN3-209ENST00000555353 KDM2AQ9Y2K7 1162 aa29.74■■■□□ 2.35
FOXN3-209ENST00000555353 XRN1Q8IZH2 1706 aaKnown RBP29.74■■■□□ 2.35
FOXN3-209ENST00000555353 NRXN1Q9ULB1 1477 aa29.73■■■□□ 2.35
FOXN3-209ENST00000555353 RBM33Q96EV2 1170 aaKnown RBP29.73■■■□□ 2.35
FOXN3-209ENST00000555353 STAC3Q96MF2 364 aa29.73■■■□□ 2.35
FOXN3-209ENST00000555353 SIN3AQ96ST3 1273 aa29.71■■■□□ 2.35
FOXN3-209ENST00000555353 TOM1O60784 492 aa29.69■■■□□ 2.34
FOXN3-209ENST00000555353 LAMC1P11047 1609 aa29.69■■■□□ 2.34
FOXN3-209ENST00000555353 NEUROD1Q13562 356 aa29.69■■■□□ 2.34
FOXN3-209ENST00000555353 C14orf37Q86TY3 774 aa29.66■■■□□ 2.34
FOXN3-209ENST00000555353 C14orf93Q9H972 538 aaKnown RBP29.66■■■□□ 2.34
FOXN3-209ENST00000555353 NCOA3Q9Y6Q9 1424 aa29.65■■■□□ 2.34
FOXN3-209ENST00000555353 MSH6P52701 1360 aa29.64■■■□□ 2.34
FOXN3-209ENST00000555353 CFAP70Q5T0N1 1121 aa29.64■■■□□ 2.33
FOXN3-209ENST00000555353 CCER1Q8TC90 406 aaPredicted RBP29.64■■■□□ 2.33
FOXN3-209ENST00000555353 TMEM132EQ6IEE7 984 aa29.62■■■□□ 2.33
FOXN3-209ENST00000555353 ASXL1Q8IXJ9 1541 aa29.6■■■□□ 2.33
FOXN3-209ENST00000555353 PTCH1Q13635 1447 aa29.6■■■□□ 2.33
FOXN3-209ENST00000555353 SCAF1Q9H7N4 1312 aaKnown RBP29.6■■■□□ 2.33
FOXN3-209ENST00000555353 PIP4K2BP78356 416 aa29.59■■■□□ 2.33
FOXN3-209ENST00000555353 PRAG1Q86YV5 1406 aa29.59■■■□□ 2.33
FOXN3-209ENST00000555353 STK26Q9P289 416 aa29.59■■■□□ 2.33
FOXN3-209ENST00000555353 L3MBTL2Q969R5 705 aa29.58■■■□□ 2.33
FOXN3-209ENST00000555353 LRPPRCP42704 1394 aaKnown RBP29.58■■■□□ 2.33
FOXN3-209ENST00000555353 ROBO2Q9HCK4 1378 aa29.57■■■□□ 2.32
FOXN3-209ENST00000555353 YTHDC2Q9H6S0 1430 aaKnown RBP29.56■■■□□ 2.32
FOXN3-209ENST00000555353 C19orf44Q9H6X5 657 aa29.56■■■□□ 2.32
FOXN3-209ENST00000555353 KNDC1Q76NI1 1749 aa29.55■■■□□ 2.32
FOXN3-209ENST00000555353 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.54■■■□□ 2.32
FOXN3-209ENST00000555353 ABCC11Q96J66 1382 aa29.54■■■□□ 2.32
FOXN3-209ENST00000555353 TECPR2O15040 1411 aa29.53■■■□□ 2.32
FOXN3-209ENST00000555353 CLSPNQ9HAW4 1339 aa29.52■■■□□ 2.32
FOXN3-209ENST00000555353 ATF3P18847 181 aa29.51■■■□□ 2.31
FOXN3-209ENST00000555353 ADGRL3Q9HAR2 1447 aa29.5■■■□□ 2.31
FOXN3-209ENST00000555353 CADPS2Q86UW7 1296 aa29.5■■■□□ 2.31
FOXN3-209ENST00000555353 NALCNQ8IZF0 1738 aa29.5■■■□□ 2.31
FOXN3-209ENST00000555353 ADGRB1O14514 1584 aa29.5■■■□□ 2.31
FOXN3-209ENST00000555353 TONSLQ96HA7 1378 aa29.49■■■□□ 2.31
FOXN3-209ENST00000555353 KIAA1210Q9ULL0 1709 aa29.49■■■□□ 2.31
FOXN3-209ENST00000555353 DCCP43146 1447 aa29.47■■■□□ 2.31
FOXN3-209ENST00000555353 SLAIN2Q9P270 581 aa29.45■■■□□ 2.31
FOXN3-209ENST00000555353 WAPLQ7Z5K2 1190 aa29.44■■■□□ 2.3
FOXN3-209ENST00000555353 FAM135BQ49AJ0 1406 aa29.44■■■□□ 2.3
FOXN3-209ENST00000555353 SIRT1Q96EB6 747 aa29.43■■■□□ 2.3
FOXN3-209ENST00000555353 TRAK1Q9UPV9 953 aa29.41■■■□□ 2.3
FOXN3-209ENST00000555353 DLC1Q96QB1 1528 aa29.41■■■□□ 2.3
FOXN3-209ENST00000555353 PLEKHH1Q9ULM0 1364 aa29.4■■■□□ 2.3
FOXN3-209ENST00000555353 ROBO1Q9Y6N7 1651 aa29.39■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms