RNA–Protein interactions for RNA: ENST00000552000.2

HOXB3-213, Transcript of homeobox B3, humanhuman

TSL 3

Gene HOXB3, Length 466 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXB3-213ENST00000552000 KRTAP3-3Q9BYR6 98 aa8.97□□□□□ -0.97
HOXB3-213ENST00000552000 KRTAP3-2Q9BYR7 98 aa8.97□□□□□ -0.97
HOXB3-213ENST00000552000 CLIP1P30622 1438 aa8.97□□□□□ -0.97
HOXB3-213ENST00000552000 NPATQ14207 1427 aa8.97□□□□□ -0.97
HOXB3-213ENST00000552000 EEA1Q15075 1411 aa8.97□□□□□ -0.97
HOXB3-213ENST00000552000 KIDINS220Q9ULH0 1771 aa8.96□□□□□ -0.97
HOXB3-213ENST00000552000 MED1Q15648 1581 aaPredicted RBP8.96□□□□□ -0.97
HOXB3-213ENST00000552000 G3V3G9 751 aa8.96□□□□□ -0.98
HOXB3-213ENST00000552000 PIP4K2BP78356 416 aa8.96□□□□□ -0.98
HOXB3-213ENST00000552000 SUPT6HQ7KZ85 1726 aaKnown RBP8.96□□□□□ -0.98
HOXB3-213ENST00000552000 ZMYM3Q14202 1370 aa8.96□□□□□ -0.98
HOXB3-213ENST00000552000 FMN1Q68DA7 1419 aa8.96□□□□□ -0.98
HOXB3-213ENST00000552000 ITSN2Q9NZM3 1697 aa8.95□□□□□ -0.98
HOXB3-213ENST00000552000 PKD2Q13563 968 aa8.95□□□□□ -0.98
HOXB3-213ENST00000552000 ABCC1P33527 1531 aa8.95□□□□□ -0.98
HOXB3-213ENST00000552000 MROH2AA6NES4 1674 aa8.94□□□□□ -0.98
HOXB3-213ENST00000552000 PLA2R1Q13018 1463 aa8.94□□□□□ -0.98
HOXB3-213ENST00000552000 UBTFP17480 764 aaKnown RBP8.93□□□□□ -0.98
HOXB3-213ENST00000552000 PSEN1P49768 467 aa8.93□□□□□ -0.98
HOXB3-213ENST00000552000 TCOF1Q13428 1488 aaKnown RBP8.93□□□□□ -0.98
HOXB3-213ENST00000552000 PREX2Q70Z35 1606 aa8.93□□□□□ -0.98
HOXB3-213ENST00000552000 ZNF142P52746 1687 aaPredicted RBP8.93□□□□□ -0.98
HOXB3-213ENST00000552000 LRRIQ1Q96JM4 1722 aa8.93□□□□□ -0.98
HOXB3-213ENST00000552000 CLTCQ00610 1675 aaKnown RBP8.92□□□□□ -0.98
HOXB3-213ENST00000552000 MYO3AQ8NEV4 1616 aa8.92□□□□□ -0.98
HOXB3-213ENST00000552000 CEP170BQ9Y4F5 1589 aaPredicted RBP8.92□□□□□ -0.98
HOXB3-213ENST00000552000 ARHGAP35Q9NRY4 1499 aa8.92□□□□□ -0.98
HOXB3-213ENST00000552000 TOM1O60784 492 aa8.92□□□□□ -0.98
HOXB3-213ENST00000552000 PTPRKQ15262 1439 aa8.91□□□□□ -0.98
HOXB3-213ENST00000552000 SPAG9O60271 1321 aaKnown RBP8.91□□□□□ -0.98
HOXB3-213ENST00000552000 ZNF777Q9ULD5 760 aaPredicted RBP8.91□□□□□ -0.98
HOXB3-213ENST00000552000 SAMD9LQ8IVG5 1584 aa8.9□□□□□ -0.98
HOXB3-213ENST00000552000 GGT6Q6P531 493 aa8.9□□□□□ -0.98
HOXB3-213ENST00000552000 CDC42BPAQ5VT25 1732 aa8.9□□□□□ -0.98
HOXB3-213ENST00000552000 CHRM1P11229 460 aaPredicted RBP8.88□□□□□ -0.99
HOXB3-213ENST00000552000 HNRNPMP52272 730 aaKnown RBP eCLIP8.88□□□□□ -0.99
HOXB3-213ENST00000552000 ZNF710Q8N1W2 664 aa8.88□□□□□ -0.99
HOXB3-213ENST00000552000 SYCP2Q9BX26 1530 aa8.88□□□□□ -0.99
HOXB3-213ENST00000552000 CPS1P31327 1500 aa8.87□□□□□ -0.99
HOXB3-213ENST00000552000 PDAP1Q13442 181 aaKnown RBP8.87□□□□□ -0.99
HOXB3-213ENST00000552000 A2ML1A8K2U0 1454 aa8.87□□□□□ -0.99
HOXB3-213ENST00000552000 SHANK2Q9UPX8 1470 aa8.87□□□□□ -0.99
HOXB3-213ENST00000552000 DNMT1P26358 1616 aaKnown RBP8.87□□□□□ -0.99
HOXB3-213ENST00000552000 ATP7AQ04656 1500 aa8.86□□□□□ -0.99
HOXB3-213ENST00000552000 POLR1AO95602 1720 aaPredicted RBP8.86□□□□□ -0.99
HOXB3-213ENST00000552000 A2MP01023 1474 aa8.86□□□□□ -0.99
HOXB3-213ENST00000552000 PLXNC1O60486 1568 aa8.86□□□□□ -0.99
HOXB3-213ENST00000552000 VASPP50552 380 aaPredicted RBP8.85□□□□□ -0.99
HOXB3-213ENST00000552000 BOLA1Q9Y3E2 137 aa8.85□□□□□ -0.99
HOXB3-213ENST00000552000 NEURL4Q96JN8 1562 aa8.85□□□□□ -0.99
HOXB3-213ENST00000552000 CCDC18Q5T9S5 1454 aa8.84□□□□□ -0.99
HOXB3-213ENST00000552000 FBXO31Q5XUX0 539 aaPredicted RBP8.84□□□□□ -0.99
HOXB3-213ENST00000552000 CASKIN1Q8WXD9 1431 aa8.84□□□□□ -0.99
HOXB3-213ENST00000552000 CABP2Q9NPB3 220 aa8.84□□□□□ -0.99
HOXB3-213ENST00000552000 TNRQ92752 1358 aa8.84□□□□□ -0.99
HOXB3-213ENST00000552000 ALKQ9UM73 1620 aa8.83□□□□□ -1
HOXB3-213ENST00000552000 INO80Q9ULG1 1556 aaPredicted RBP8.83□□□□□ -1
HOXB3-213ENST00000552000 DOK7Q18PE1 504 aa8.83□□□□□ -1
HOXB3-213ENST00000552000 DPY19L2Q6NUT2 758 aa8.83□□□□□ -1
HOXB3-213ENST00000552000 ANKLE2Q86XL3 938 aa8.83□□□□□ -1
HOXB3-213ENST00000552000 GPATCH8Q9UKJ3 1502 aaKnown RBP8.83□□□□□ -1
HOXB3-213ENST00000552000 ERBB3P21860 1342 aa8.82□□□□□ -1
HOXB3-213ENST00000552000 VWDEQ8N2E2 1590 aa8.82□□□□□ -1
HOXB3-213ENST00000552000 KIAA1107Q9UPP5 1409 aa8.82□□□□□ -1
HOXB3-213ENST00000552000 CFDP1Q9UEE9 299 aaPredicted RBP8.82□□□□□ -1
HOXB3-213ENST00000552000 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.82□□□□□ -14e-7■■■■■ 39.7
HOXB3-213ENST00000552000 ADGBQ8N7X0 1667 aa8.81□□□□□ -1
HOXB3-213ENST00000552000 RIMBP2O15034 1052 aa8.81□□□□□ -1
HOXB3-213ENST00000552000 HOXB1P14653 301 aaPredicted RBP8.81□□□□□ -1
HOXB3-213ENST00000552000 RGS17Q9UGC6 210 aaPredicted RBP8.81□□□□□ -1
HOXB3-213ENST00000552000 PLEKHH2Q8IVE3 1493 aa8.81□□□□□ -1
HOXB3-213ENST00000552000 NPHP4O75161 1426 aaPredicted RBP8.8□□□□□ -1
HOXB3-213ENST00000552000 HOXB3P14651 431 aaPredicted RBP8.8□□□□□ -1
HOXB3-213ENST00000552000 RNF166Q96A37 237 aaPredicted RBP8.8□□□□□ -1
HOXB3-213ENST00000552000 STRCP1A6NGW2 1772 aa8.79□□□□□ -1
HOXB3-213ENST00000552000 CCNB3Q8WWL7 1395 aa8.79□□□□□ -1
HOXB3-213ENST00000552000 THEMISQ8N1K5 641 aaPredicted RBP8.79□□□□□ -1
HOXB3-213ENST00000552000 CFAP65Q6ZU64 1925 aaKnown RBP8.79□□□□□ -1
HOXB3-213ENST00000552000 ZNF644Q9H582 1327 aaPredicted RBP8.79□□□□□ -1
HOXB3-213ENST00000552000 PZPP20742 1482 aa8.78□□□□□ -1
HOXB3-213ENST00000552000 KIF3BO15066 747 aa8.78□□□□□ -1
HOXB3-213ENST00000552000 CIZ1Q9ULV3 898 aaPredicted RBP8.78□□□□□ -1
HOXB3-213ENST00000552000 LRRC7Q96NW7 1537 aa8.78□□□□□ -1
HOXB3-213ENST00000552000 MED14O60244 1454 aa8.77□□□□□ -1
HOXB3-213ENST00000552000 FYCO1Q9BQS8 1478 aa8.77□□□□□ -1
HOXB3-213ENST00000552000 DHX29Q7Z478 1369 aaKnown RBP8.77□□□□□ -1.01
HOXB3-213ENST00000552000 FAM135AQ9P2D6 1515 aa8.77□□□□□ -1.01
HOXB3-213ENST00000552000 IQGAP1P46940 1657 aa8.77□□□□□ -1.01
HOXB3-213ENST00000552000 SRCAPQ6ZRS2 3230 aa8.77□□□□□ -1.01
HOXB3-213ENST00000552000 MIA2Q96PC5 1412 aa8.77□□□□□ -1.01
HOXB3-213ENST00000552000 UGGT1Q9NYU2 1555 aa8.77□□□□□ -1.01
HOXB3-213ENST00000552000 WASHC2CQ9Y4E1 1318 aa8.77□□□□□ -1.01
HOXB3-213ENST00000552000 DEPDC5O75140 1603 aa8.76□□□□□ -1.01
HOXB3-213ENST00000552000 RNF17Q9BXT8 1623 aaKnown RBP8.76□□□□□ -1.01
HOXB3-213ENST00000552000 POTEAQ6S8J7 498 aa8.76□□□□□ -1.01
HOXB3-213ENST00000552000 NLRP1Q9C000 1473 aa8.76□□□□□ -1.01
HOXB3-213ENST00000552000 KDM5DQ9BY66 1539 aa8.75□□□□□ -1.01
HOXB3-213ENST00000552000 MTUS2Q5JR59 1369 aa8.74□□□□□ -1.01
HOXB3-213ENST00000552000 RTEL1-TNFRSF6BF6WH68 1400 aa8.74□□□□□ -1.01
HOXB3-213ENST00000552000 VARS2Q5ST30 1063 aaKnown RBP8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms