RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 RTEL1-TNFRSF6BF6WH68 1400 aa13.03□□□□□ -0.32
CHD4-208ENST00000540960 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.02□□□□□ -0.32
CHD4-208ENST00000540960 BCL9LQ86UU0 1499 aa13.02□□□□□ -0.33
CHD4-208ENST00000540960 USP21Q9UK80 565 aa13.01□□□□□ -0.33
CHD4-208ENST00000540960 PIK3C2BO00750 1634 aa13.01□□□□□ -0.33
CHD4-208ENST00000540960 CHD2O14647 1828 aaKnown RBP13□□□□□ -0.33
CHD4-208ENST00000540960 SETD5Q9C0A6 1442 aa13□□□□□ -0.33
CHD4-208ENST00000540960 UBTFP17480 764 aaKnown RBP13□□□□□ -0.33
CHD4-208ENST00000540960 EHMT2Q96KQ7 1210 aa13□□□□□ -0.33
CHD4-208ENST00000540960 BLMP54132 1417 aaPredicted RBP12.99□□□□□ -0.33
CHD4-208ENST00000540960 DDX17Q92841 729 aaKnown RBP12.99□□□□□ -0.33
CHD4-208ENST00000540960 TRPC5Q9UL62 973 aaPredicted RBP12.99□□□□□ -0.33
CHD4-208ENST00000540960 CEP152O94986 1710 aa12.99□□□□□ -0.33
CHD4-208ENST00000540960 PNPLA6Q8IY17 1366 aa12.98□□□□□ -0.33
CHD4-208ENST00000540960 ATRNO75882 1429 aa12.97□□□□□ -0.33
CHD4-208ENST00000540960 C14orf37Q86TY3 774 aa12.97□□□□□ -0.33
CHD4-208ENST00000540960 CADPS2Q86UW7 1296 aa12.96□□□□□ -0.33
CHD4-208ENST00000540960 ATF3P18847 181 aa12.95□□□□□ -0.34
CHD4-208ENST00000540960 LRRC59Q96AG4 307 aaKnown RBP12.95□□□□□ -0.34
CHD4-208ENST00000540960 CAMSAP2Q08AD1 1489 aa12.95□□□□□ -0.34
CHD4-208ENST00000540960 CCDC18Q5T9S5 1454 aa12.95□□□□□ -0.34
CHD4-208ENST00000540960 BRWD3Q6RI45 1802 aa12.95□□□□□ -0.34
CHD4-208ENST00000540960 CCNB3Q8WWL7 1395 aa12.94□□□□□ -0.34
CHD4-208ENST00000540960 BCANQ96GW7 911 aa12.94□□□□□ -0.34
CHD4-208ENST00000540960 C19orf44Q9H6X5 657 aa12.94□□□□□ -0.34
CHD4-208ENST00000540960 ASXL1Q8IXJ9 1541 aa12.93□□□□□ -0.34
CHD4-208ENST00000540960 MROH1Q8NDA8 1641 aa12.93□□□□□ -0.34
CHD4-208ENST00000540960 FNBP4Q8N3X1 1017 aaPredicted RBP12.93□□□□□ -0.34
CHD4-208ENST00000540960 STAG3Q9UJ98 1225 aa12.93□□□□□ -0.34
CHD4-208ENST00000540960 CASKIN1Q8WXD9 1431 aa12.91□□□□□ -0.34
CHD4-208ENST00000540960 NCOA3Q9Y6Q9 1424 aa12.91□□□□□ -0.34
CHD4-208ENST00000540960 EFCAB6Q5THR3 1501 aa12.91□□□□□ -0.34
CHD4-208ENST00000540960 IDI1Q13907 227 aa12.9□□□□□ -0.34
CHD4-208ENST00000540960 R3HDM1Q15032 1099 aaKnown RBP12.9□□□□□ -0.34
CHD4-208ENST00000540960 ZNF784Q8NCA9 323 aaPredicted RBP12.9□□□□□ -0.34
CHD4-208ENST00000540960 CEP162Q5TB80 1403 aa12.89□□□□□ -0.35
CHD4-208ENST00000540960 C1QTNF8P60827 252 aa12.89□□□□□ -0.35
CHD4-208ENST00000540960 SF3B2Q13435 895 aaKnown RBP12.89□□□□□ -0.35
CHD4-208ENST00000540960 GJD4Q96KN9 370 aaPredicted RBP12.88□□□□□ -0.35
CHD4-208ENST00000540960 CCDC141Q6ZP82 1450 aa12.86□□□□□ -0.35
CHD4-208ENST00000540960 TRIM26Q12899 539 aaPredicted RBP12.86□□□□□ -0.35
CHD4-208ENST00000540960 CAMTA1Q9Y6Y1 1673 aa12.85□□□□□ -0.35
CHD4-208ENST00000540960 MST1RQ04912 1400 aa12.85□□□□□ -0.35
CHD4-208ENST00000540960 UNC13BO14795 1591 aa12.84□□□□□ -0.35
CHD4-208ENST00000540960 GLI3P10071 1580 aa12.84□□□□□ -0.35
CHD4-208ENST00000540960 ARHGAP31Q2M1Z3 1444 aa12.83□□□□□ -0.36
CHD4-208ENST00000540960 EN1Q05925 392 aaPredicted RBP12.82□□□□□ -0.36
CHD4-208ENST00000540960 CEP350Q5VT06 3117 aa12.82□□□□□ -0.36
CHD4-208ENST00000540960 MYO5BQ9ULV0 1848 aa12.81□□□□□ -0.36
CHD4-208ENST00000540960 PTCH1Q13635 1447 aa12.81□□□□□ -0.36
CHD4-208ENST00000540960 TBX22Q9Y458 520 aa12.81□□□□□ -0.36
CHD4-208ENST00000540960 PLEKHG1Q9ULL1 1385 aa12.81□□□□□ -0.36
CHD4-208ENST00000540960 RALGAPBQ86X10 1494 aa12.8□□□□□ -0.36
CHD4-208ENST00000540960 APLP2Q06481 763 aa12.8□□□□□ -0.36
CHD4-208ENST00000540960 EIF2AK4Q9P2K8 1649 aaKnown RBP12.8□□□□□ -0.36
CHD4-208ENST00000540960 SPHKAPQ2M3C7 1700 aa12.79□□□□□ -0.36
CHD4-208ENST00000540960 BAG6P46379 1132 aa12.79□□□□□ -0.36
CHD4-208ENST00000540960 MARF1Q9Y4F3 1742 aaKnown RBP12.79□□□□□ -0.36
CHD4-208ENST00000540960 ZFYVE9O95405 1425 aa12.79□□□□□ -0.36
CHD4-208ENST00000540960 SEPT12Q8IYM1 358 aa12.78□□□□□ -0.36
CHD4-208ENST00000540960 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.78□□□□□ -0.363e-8■■■■□ 19.5
CHD4-208ENST00000540960 ADAMTS13Q76LX8 1427 aa12.78□□□□□ -0.36
CHD4-208ENST00000540960 ADGRB3O60242 1522 aa12.78□□□□□ -0.36
CHD4-208ENST00000540960 PPP1R15AO75807 674 aaPredicted RBP12.77□□□□□ -0.37
CHD4-208ENST00000540960 PTPRUQ92729 1446 aa12.77□□□□□ -0.37
CHD4-208ENST00000540960 FYCO1Q9BQS8 1478 aa12.77□□□□□ -0.37
CHD4-208ENST00000540960 AMOTL2Q9Y2J4 779 aa12.76□□□□□ -0.37
CHD4-208ENST00000540960 DCCP43146 1447 aa12.76□□□□□ -0.37
CHD4-208ENST00000540960 TSPY4P0CV99 314 aa12.75□□□□□ -0.37
CHD4-208ENST00000540960 TSPY10P0CW01 314 aa12.75□□□□□ -0.37
CHD4-208ENST00000540960 MTUS2Q5JR59 1369 aa12.75□□□□□ -0.37
CHD4-208ENST00000540960 RSPH4AQ5TD94 716 aa12.75□□□□□ -0.37
CHD4-208ENST00000540960 COL22A1Q8NFW1 1626 aaPredicted RBP12.75□□□□□ -0.37
CHD4-208ENST00000540960 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.74□□□□□ -0.37
CHD4-208ENST00000540960 SOS2Q07890 1332 aaPredicted RBP12.74□□□□□ -0.37
CHD4-208ENST00000540960 DCAF8L1A6NGE4 600 aa12.74□□□□□ -0.37
CHD4-208ENST00000540960 KRT27Q7Z3Y8 459 aa12.74□□□□□ -0.37
CHD4-208ENST00000540960 VPS8Q8N3P4 1428 aa12.73□□□□□ -0.37
CHD4-208ENST00000540960 RIMS2Q9UQ26 1411 aa12.73□□□□□ -0.37
CHD4-208ENST00000540960 EZH2Q15910 746 aaKnown RBP12.73□□□□□ -0.37
CHD4-208ENST00000540960 UTRNP46939 3433 aa12.73□□□□□ -0.37
CHD4-208ENST00000540960 LAMC1P11047 1609 aa12.73□□□□□ -0.37
CHD4-208ENST00000540960 TRPM2O94759 1503 aa12.72□□□□□ -0.37
CHD4-208ENST00000540960 MYOM2P54296 1465 aa12.72□□□□□ -0.37
CHD4-208ENST00000540960 UNC5CLQ8IV45 518 aa12.72□□□□□ -0.37
CHD4-208ENST00000540960 PCGF6Q9BYE7 350 aa12.72□□□□□ -0.37
CHD4-208ENST00000540960 ARHGEF5Q12774 1597 aa12.72□□□□□ -0.37
CHD4-208ENST00000540960 ORAI2Q96SN7 254 aa12.71□□□□□ -0.37
CHD4-208ENST00000540960 FAM182BQ5T319 152 aa12.7□□□□□ -0.38
CHD4-208ENST00000540960 NOS1P29475 1434 aa12.7□□□□□ -0.38
CHD4-208ENST00000540960 ONECUT3O60422 494 aaPredicted RBP12.69□□□□□ -0.38
CHD4-208ENST00000540960 PPP1R1BQ9UD71 204 aaPredicted RBP12.69□□□□□ -0.38
CHD4-208ENST00000540960 GCC2Q8IWJ2 1684 aa12.69□□□□□ -0.38
CHD4-208ENST00000540960 PIK3R4Q99570 1358 aa12.69□□□□□ -0.38
CHD4-208ENST00000540960 RGPD1P0DJD0 1748 aa12.68□□□□□ -0.38
CHD4-208ENST00000540960 SLIT2O94813 1529 aa12.68□□□□□ -0.38
CHD4-208ENST00000540960 EHBP1L1Q8N3D4 1523 aa12.68□□□□□ -0.38
CHD4-208ENST00000540960 C1orf167Q5SNV9 1468 aa12.68□□□□□ -0.38
CHD4-208ENST00000540960 CHD4Q14839 1912 aa12.68□□□□□ -0.38
CHD4-208ENST00000540960 NALCNQ8IZF0 1738 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms