RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 LTKP29376 864 aa21.28■■□□□ 1
CPSF1-206ENST00000531480 NEXMIFQ5QGS0 1516 aa21.28■■□□□ 1
CPSF1-206ENST00000531480 RIMS2Q9UQ26 1411 aa21.28■■□□□ 1
CPSF1-206ENST00000531480 DMRT2Q9Y5R5 561 aa21.27■■□□□ 1
CPSF1-206ENST00000531480 IQGAP1P46940 1657 aa21.27■■□□□ 1
CPSF1-206ENST00000531480 NPHP4O75161 1426 aaPredicted RBP21.25■□□□□ 0.99
CPSF1-206ENST00000531480 IFT172Q9UG01 1749 aa21.25■□□□□ 0.99
CPSF1-206ENST00000531480 PPLO60437 1756 aa21.25■□□□□ 0.99
CPSF1-206ENST00000531480 TXNDC2Q86VQ3 553 aa21.24■□□□□ 0.99
CPSF1-206ENST00000531480 CHGAP10645 457 aaKnown RBP21.23■□□□□ 0.99
CPSF1-206ENST00000531480 EID1Q9Y6B2 187 aa21.23■□□□□ 0.99
CPSF1-206ENST00000531480 RPGRIP1LQ68CZ1 1315 aa21.23■□□□□ 0.99
CPSF1-206ENST00000531480 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.22■□□□□ 0.99
CPSF1-206ENST00000531480 HDGFP51858 240 aaKnown RBP21.21■□□□□ 0.99
CPSF1-206ENST00000531480 PLEKHG1Q9ULL1 1385 aa21.21■□□□□ 0.99
CPSF1-206ENST00000531480 SETBP1Q9Y6X0 1596 aa21.18■□□□□ 0.98
CPSF1-206ENST00000531480 LTBP4Q8N2S1 1624 aa21.18■□□□□ 0.98
CPSF1-206ENST00000531480 NRXN3Q9Y4C0 1643 aa21.18■□□□□ 0.98
CPSF1-206ENST00000531480 ZNF326Q5BKZ1 582 aaKnown RBP21.16■□□□□ 0.98
CPSF1-206ENST00000531480 DIP2AQ14689 1571 aa21.15■□□□□ 0.98
CPSF1-206ENST00000531480 ADAMTS13Q76LX8 1427 aa21.14■□□□□ 0.98
CPSF1-206ENST00000531480 MYOM2P54296 1465 aa21.13■□□□□ 0.97
CPSF1-206ENST00000531480 NRXN1Q9ULB1 1477 aa21.13■□□□□ 0.97
CPSF1-206ENST00000531480 VGFO15240 615 aaPredicted RBP21.12■□□□□ 0.97
CPSF1-206ENST00000531480 SETD1AO15047 1707 aaKnown RBP21.11■□□□□ 0.97
CPSF1-206ENST00000531480 ZNF335Q9H4Z2 1342 aaPredicted RBP21.1■□□□□ 0.97
CPSF1-206ENST00000531480 PPP1R15AO75807 674 aaPredicted RBP21.1■□□□□ 0.97
CPSF1-206ENST00000531480 RGL3Q3MIN7 710 aa21.1■□□□□ 0.97
CPSF1-206ENST00000531480 NUTM2DQ5VT03 806 aaPredicted RBP21.09■□□□□ 0.97
CPSF1-206ENST00000531480 STAC3Q96MF2 364 aa21.09■□□□□ 0.97
CPSF1-206ENST00000531480 TBX22Q9Y458 520 aa21.09■□□□□ 0.97
CPSF1-206ENST00000531480 STRCP1A6NGW2 1772 aa21.08■□□□□ 0.97
CPSF1-206ENST00000531480 CHD2O14647 1828 aaKnown RBP21.08■□□□□ 0.96
CPSF1-206ENST00000531480 CLSPNQ9HAW4 1339 aa21.07■□□□□ 0.96
CPSF1-206ENST00000531480 NWD1Q149M9 1564 aa21.07■□□□□ 0.96
CPSF1-206ENST00000531480 PIK3C2GO75747 1445 aa21.07■□□□□ 0.96
CPSF1-206ENST00000531480 SIN3AQ96ST3 1273 aa21.06■□□□□ 0.96
CPSF1-206ENST00000531480 PIK3R4Q99570 1358 aa21.06■□□□□ 0.96
CPSF1-206ENST00000531480 ADGRF5Q8IZF2 1346 aa21.05■□□□□ 0.96
CPSF1-206ENST00000531480 ALKQ9UM73 1620 aa21.05■□□□□ 0.96
CPSF1-206ENST00000531480 SLC26A8Q96RN1 970 aa21.04■□□□□ 0.96
CPSF1-206ENST00000531480 CPS1P31327 1500 aa21.03■□□□□ 0.96
CPSF1-206ENST00000531480 LAMC1P11047 1609 aa21.02■□□□□ 0.96
CPSF1-206ENST00000531480 IQSEC2Q5JU85 1478 aa21.01■□□□□ 0.95
CPSF1-206ENST00000531480 PRAG1Q86YV5 1406 aa21■□□□□ 0.95
CPSF1-206ENST00000531480 XRN1Q8IZH2 1706 aaKnown RBP21■□□□□ 0.95
CPSF1-206ENST00000531480 KCNA6P17658 529 aa20.99■□□□□ 0.95
CPSF1-206ENST00000531480 DCAF11Q8TEB1 546 aa20.99■□□□□ 0.95
CPSF1-206ENST00000531480 NKTRP30414 1462 aaKnown RBP20.99■□□□□ 0.95
CPSF1-206ENST00000531480 METP08581 1390 aa20.98■□□□□ 0.95
CPSF1-206ENST00000531480 PTPRUQ92729 1446 aa20.97■□□□□ 0.95
CPSF1-206ENST00000531480 BCANQ96GW7 911 aa20.97■□□□□ 0.95
CPSF1-206ENST00000531480 ASXL1Q8IXJ9 1541 aa20.97■□□□□ 0.95
CPSF1-206ENST00000531480 KIAA1210Q9ULL0 1709 aa20.96■□□□□ 0.95
CPSF1-206ENST00000531480 L3MBTL2Q969R5 705 aa20.96■□□□□ 0.95
CPSF1-206ENST00000531480 C14orf93Q9H972 538 aaKnown RBP20.96■□□□□ 0.95
CPSF1-206ENST00000531480 NEUROD1Q13562 356 aa20.95■□□□□ 0.94
CPSF1-206ENST00000531480 XIRP1Q702N8 1843 aaKnown RBP20.94■□□□□ 0.94
CPSF1-206ENST00000531480 LRRC7Q96NW7 1537 aa20.94■□□□□ 0.94
CPSF1-206ENST00000531480 SENP3Q9H4L4 574 aaPredicted RBP20.93■□□□□ 0.94
CPSF1-206ENST00000531480 ADGRB1O14514 1584 aa20.93■□□□□ 0.94
CPSF1-206ENST00000531480 KNDC1Q76NI1 1749 aa20.92■□□□□ 0.94
CPSF1-206ENST00000531480 UBAP1LF5GYI3 381 aa20.91■□□□□ 0.94
CPSF1-206ENST00000531480 KDM2AQ9Y2K7 1162 aa20.91■□□□□ 0.94
CPSF1-206ENST00000531480 TECPR2O15040 1411 aa20.9■□□□□ 0.94
CPSF1-206ENST00000531480 PTCH1Q13635 1447 aa20.89■□□□□ 0.94
CPSF1-206ENST00000531480 NCOA3Q9Y6Q9 1424 aa20.89■□□□□ 0.94
CPSF1-206ENST00000531480 CFAP70Q5T0N1 1121 aa20.89■□□□□ 0.93
CPSF1-206ENST00000531480 AMOTL2Q9Y2J4 779 aa20.89■□□□□ 0.93
CPSF1-206ENST00000531480 TONSLQ96HA7 1378 aa20.88■□□□□ 0.93
CPSF1-206ENST00000531480 CCER1Q8TC90 406 aaPredicted RBP20.88■□□□□ 0.93
CPSF1-206ENST00000531480 TIMELESSQ9UNS1 1208 aa20.88■□□□□ 0.93
CPSF1-206ENST00000531480 LRPPRCP42704 1394 aaKnown RBP20.87■□□□□ 0.93
CPSF1-206ENST00000531480 ABCC11Q96J66 1382 aa20.86■□□□□ 0.93
CPSF1-206ENST00000531480 TRPM1Q7Z4N2 1603 aa20.86■□□□□ 0.93
CPSF1-206ENST00000531480 YTHDC2Q9H6S0 1430 aaKnown RBP20.86■□□□□ 0.93
CPSF1-206ENST00000531480 SCAF1Q9H7N4 1312 aaKnown RBP20.84■□□□□ 0.93
CPSF1-206ENST00000531480 TMEM94Q12767 1356 aa20.84■□□□□ 0.93
CPSF1-206ENST00000531480 DLC1Q96QB1 1528 aa20.83■□□□□ 0.93
CPSF1-206ENST00000531480 TMEM132EQ6IEE7 984 aa20.82■□□□□ 0.92
CPSF1-206ENST00000531480 SIRT1Q96EB6 747 aa20.82■□□□□ 0.92
CPSF1-206ENST00000531480 ROBO2Q9HCK4 1378 aa20.82■□□□□ 0.92
CPSF1-206ENST00000531480 DISP3Q9P2K9 1392 aa20.82■□□□□ 0.92
CPSF1-206ENST00000531480 PROSER2Q86WR7 435 aaPredicted RBP20.81■□□□□ 0.92
CPSF1-206ENST00000531480 FAM135BQ49AJ0 1406 aa20.8■□□□□ 0.92
CPSF1-206ENST00000531480 PIP4K2BP78356 416 aa20.79■□□□□ 0.92
CPSF1-206ENST00000531480 NBPF8Q3BBV2 869 aa20.79■□□□□ 0.92
CPSF1-206ENST00000531480 GPRASP1Q5JY77 1395 aa20.78■□□□□ 0.92
CPSF1-206ENST00000531480 RALGAPBQ86X10 1494 aa20.77■□□□□ 0.92
CPSF1-206ENST00000531480 NALCNQ8IZF0 1738 aa20.77■□□□□ 0.92
CPSF1-206ENST00000531480 ARHGEF28Q8N1W1 1705 aaKnown RBP20.77■□□□□ 0.92
CPSF1-206ENST00000531480 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.76■□□□□ 0.91
CPSF1-206ENST00000531480 NBPF1Q3BBV0 1214 aa20.76■□□□□ 0.91
CPSF1-206ENST00000531480 DCCP43146 1447 aa20.75■□□□□ 0.91
CPSF1-206ENST00000531480 ADGRL3Q9HAR2 1447 aa20.75■□□□□ 0.91
CPSF1-206ENST00000531480 RBM33Q96EV2 1170 aaKnown RBP20.73■□□□□ 0.91
CPSF1-206ENST00000531480 C19orf44Q9H6X5 657 aa20.72■□□□□ 0.91
CPSF1-206ENST00000531480 STK26Q9P289 416 aa20.72■□□□□ 0.91
CPSF1-206ENST00000531480 MSH6P52701 1360 aa20.72■□□□□ 0.91
CPSF1-206ENST00000531480 TOM1O60784 492 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms