RNA–Protein interactions for RNA: ENST00000515824.1

LMNA-225, Transcript of lamin A/C, humanhuman

TSL 2

Gene LMNA, Length 393 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-225ENST00000515824 ZFYVE9O95405 1425 aa28.78■■■□□ 2.2
LMNA-225ENST00000515824 RAB3GAP2Q9H2M9 1393 aa28.78■■■□□ 2.2
LMNA-225ENST00000515824 TRPM2O94759 1503 aa28.77■■■□□ 2.2
LMNA-225ENST00000515824 IQSEC2Q5JU85 1478 aa28.77■■■□□ 2.2
LMNA-225ENST00000515824 CPS1P31327 1500 aa28.76■■■□□ 2.19
LMNA-225ENST00000515824 FOXD1Q16676 465 aa28.76■■■□□ 2.19
LMNA-225ENST00000515824 ZNF326Q5BKZ1 582 aaKnown RBP28.76■■■□□ 2.19
LMNA-225ENST00000515824 MYO5BQ9ULV0 1848 aa28.76■■■□□ 2.19
LMNA-225ENST00000515824 SLC26A8Q96RN1 970 aa28.75■■■□□ 2.19
LMNA-225ENST00000515824 NUTM2DQ5VT03 806 aaPredicted RBP28.73■■■□□ 2.19
LMNA-225ENST00000515824 PLEKHG1Q9ULL1 1385 aa28.73■■■□□ 2.19
LMNA-225ENST00000515824 HRCP23327 699 aa28.72■■■□□ 2.19
LMNA-225ENST00000515824 SENP3Q9H4L4 574 aaPredicted RBP28.7■■■□□ 2.18
LMNA-225ENST00000515824 CLTCL1P53675 1640 aa28.69■■■□□ 2.18
LMNA-225ENST00000515824 KCNA6P17658 529 aa28.65■■■□□ 2.18
LMNA-225ENST00000515824 TBX22Q9Y458 520 aa28.65■■■□□ 2.18
LMNA-225ENST00000515824 CCDC144AA2RUR9 1427 aa28.63■■■□□ 2.17
LMNA-225ENST00000515824 UBAP1LF5GYI3 381 aa28.63■■■□□ 2.17
LMNA-225ENST00000515824 KIF1BO60333 1816 aa28.62■■■□□ 2.17
LMNA-225ENST00000515824 RPGRIP1LQ68CZ1 1315 aa28.6■■■□□ 2.17
LMNA-225ENST00000515824 LRRC7Q96NW7 1537 aa28.59■■■□□ 2.17
LMNA-225ENST00000515824 STRCP1A6NGW2 1772 aa28.59■■■□□ 2.17
LMNA-225ENST00000515824 VGFO15240 615 aaPredicted RBP28.57■■■□□ 2.16
LMNA-225ENST00000515824 TOM1O60784 492 aa28.57■■■□□ 2.16
LMNA-225ENST00000515824 ADAMTS13Q76LX8 1427 aa28.57■■■□□ 2.16
LMNA-225ENST00000515824 PROSER2Q86WR7 435 aaPredicted RBP28.55■■■□□ 2.16
LMNA-225ENST00000515824 NEXMIFQ5QGS0 1516 aa28.53■■■□□ 2.16
LMNA-225ENST00000515824 PIK3R4Q99570 1358 aa28.52■■■□□ 2.16
LMNA-225ENST00000515824 RGL3Q3MIN7 710 aa28.52■■■□□ 2.16
LMNA-225ENST00000515824 DIP2AQ14689 1571 aa28.51■■■□□ 2.15
LMNA-225ENST00000515824 TMEM94Q12767 1356 aa28.49■■■□□ 2.15
LMNA-225ENST00000515824 NKTRP30414 1462 aaKnown RBP28.47■■■□□ 2.15
LMNA-225ENST00000515824 SETBP1Q9Y6X0 1596 aa28.47■■■□□ 2.15
LMNA-225ENST00000515824 SPATA31E1Q6ZUB1 1445 aa28.47■■■□□ 2.15
LMNA-225ENST00000515824 NWD1Q149M9 1564 aa28.46■■■□□ 2.15
LMNA-225ENST00000515824 PIP4K2BP78356 416 aa28.46■■■□□ 2.15
LMNA-225ENST00000515824 SCAF1Q9H7N4 1312 aaKnown RBP28.45■■■□□ 2.15
LMNA-225ENST00000515824 AMOTL2Q9Y2J4 779 aa28.45■■■□□ 2.14
LMNA-225ENST00000515824 ANKRD30BQ9BXX2 1392 aa28.45■■■□□ 2.14
LMNA-225ENST00000515824 CHD2O14647 1828 aaKnown RBP28.45■■■□□ 2.14
LMNA-225ENST00000515824 RBM33Q96EV2 1170 aaKnown RBP28.44■■■□□ 2.14
LMNA-225ENST00000515824 NRXN3Q9Y4C0 1643 aa28.41■■■□□ 2.14
LMNA-225ENST00000515824 METP08581 1390 aa28.39■■■□□ 2.14
LMNA-225ENST00000515824 TRIM26Q12899 539 aaPredicted RBP28.39■■■□□ 2.14
LMNA-225ENST00000515824 PTPRUQ92729 1446 aa28.38■■■□□ 2.13
LMNA-225ENST00000515824 ADGRF5Q8IZF2 1346 aa28.38■■■□□ 2.13
LMNA-225ENST00000515824 PPLO60437 1756 aa28.37■■■□□ 2.13
LMNA-225ENST00000515824 MSH6P52701 1360 aa28.36■■■□□ 2.13
LMNA-225ENST00000515824 NCOA3Q9Y6Q9 1424 aa28.35■■■□□ 2.13
LMNA-225ENST00000515824 XIRP1Q702N8 1843 aaKnown RBP28.35■■■□□ 2.13
LMNA-225ENST00000515824 C14orf37Q86TY3 774 aa28.35■■■□□ 2.13
LMNA-225ENST00000515824 ALKQ9UM73 1620 aa28.31■■■□□ 2.12
LMNA-225ENST00000515824 C19orf44Q9H6X5 657 aa28.29■■■□□ 2.12
LMNA-225ENST00000515824 HSPA1LP34931 641 aa28.26■■■□□ 2.11
LMNA-225ENST00000515824 IFT172Q9UG01 1749 aa28.26■■■□□ 2.11
LMNA-225ENST00000515824 XRN1Q8IZH2 1706 aaKnown RBP28.25■■■□□ 2.11
LMNA-225ENST00000515824 ATF3P18847 181 aa28.24■■■□□ 2.11
LMNA-225ENST00000515824 CADPS2Q86UW7 1296 aa28.24■■■□□ 2.11
LMNA-225ENST00000515824 STAC3Q96MF2 364 aa28.24■■■□□ 2.11
LMNA-225ENST00000515824 PIK3C2GO75747 1445 aa28.24■■■□□ 2.11
LMNA-225ENST00000515824 SLAIN2Q9P270 581 aa28.23■■■□□ 2.11
LMNA-225ENST00000515824 DCAF11Q8TEB1 546 aa28.22■■■□□ 2.11
LMNA-225ENST00000515824 MYOM2P54296 1465 aa28.21■■■□□ 2.11
LMNA-225ENST00000515824 SETD1AO15047 1707 aaKnown RBP28.21■■■□□ 2.11
LMNA-225ENST00000515824 FAM135BQ49AJ0 1406 aa28.21■■■□□ 2.11
LMNA-225ENST00000515824 C14orf93Q9H972 538 aaKnown RBP28.21■■■□□ 2.11
LMNA-225ENST00000515824 KDM2AQ9Y2K7 1162 aa28.21■■■□□ 2.11
LMNA-225ENST00000515824 TMEM132EQ6IEE7 984 aa28.19■■■□□ 2.1
LMNA-225ENST00000515824 NRXN1Q9ULB1 1477 aa28.18■■■□□ 2.1
LMNA-225ENST00000515824 PTCH1Q13635 1447 aa28.18■■■□□ 2.1
LMNA-225ENST00000515824 CFAP70Q5T0N1 1121 aa28.17■■■□□ 2.1
LMNA-225ENST00000515824 STK26Q9P289 416 aa28.17■■■□□ 2.1
LMNA-225ENST00000515824 ROBO2Q9HCK4 1378 aa28.16■■■□□ 2.1
LMNA-225ENST00000515824 PRAG1Q86YV5 1406 aa28.15■■■□□ 2.1
LMNA-225ENST00000515824 LRPPRCP42704 1394 aaKnown RBP28.14■■■□□ 2.1
LMNA-225ENST00000515824 DHX57Q6P158 1386 aaKnown RBP28.13■■■□□ 2.09
LMNA-225ENST00000515824 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.13■■■□□ 2.09
LMNA-225ENST00000515824 DCCP43146 1447 aa28.13■■■□□ 2.09
LMNA-225ENST00000515824 ABCC11Q96J66 1382 aa28.12■■■□□ 2.09
LMNA-225ENST00000515824 ADGRL3Q9HAR2 1447 aa28.11■■■□□ 2.09
LMNA-225ENST00000515824 YTHDC2Q9H6S0 1430 aaKnown RBP28.09■■■□□ 2.09
LMNA-225ENST00000515824 TECPR2O15040 1411 aa28.08■■■□□ 2.09
LMNA-225ENST00000515824 ASXL1Q8IXJ9 1541 aa28.07■■■□□ 2.08
LMNA-225ENST00000515824 ROBO1Q9Y6N7 1651 aa28.07■■■□□ 2.08
LMNA-225ENST00000515824 WAPLQ7Z5K2 1190 aa28.06■■■□□ 2.08
LMNA-225ENST00000515824 SIRT1Q96EB6 747 aa28.06■■■□□ 2.08
LMNA-225ENST00000515824 SIN3AQ96ST3 1273 aa28.06■■■□□ 2.08
LMNA-225ENST00000515824 LAMC1P11047 1609 aa28.06■■■□□ 2.08
LMNA-225ENST00000515824 NEUROD1Q13562 356 aa28.03■■■□□ 2.08
LMNA-225ENST00000515824 MST1RQ04912 1400 aa28.01■■■□□ 2.07
LMNA-225ENST00000515824 BRINP3Q76B58 766 aa28■■■□□ 2.07
LMNA-225ENST00000515824 NALCNQ8IZF0 1738 aa28■■■□□ 2.07
LMNA-225ENST00000515824 L3MBTL2Q969R5 705 aa27.98■■■□□ 2.07
LMNA-225ENST00000515824 KNDC1Q76NI1 1749 aa27.98■■■□□ 2.07
LMNA-225ENST00000515824 PLEKHH1Q9ULM0 1364 aa27.98■■■□□ 2.07
LMNA-225ENST00000515824 PRAM1Q96QH2 718 aa27.96■■■□□ 2.07
LMNA-225ENST00000515824 POGKQ9P215 609 aa27.96■■■□□ 2.07
LMNA-225ENST00000515824 TRAK1Q9UPV9 953 aa27.95■■■□□ 2.06
LMNA-225ENST00000515824 DISP3Q9P2K9 1392 aa27.95■■■□□ 2.06
LMNA-225ENST00000515824 ADGRB1O14514 1584 aa27.94■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms