RNA–Protein interactions for RNA: ENST00000515824.1

LMNA-225, Transcript of lamin A/C, humanhuman

TSL 2

Gene LMNA, Length 393 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-225ENST00000515824 NISCHQ9Y2I1 1504 aa47.05■■■■■ 5.12
LMNA-225ENST00000515824 CCDC180Q9P1Z9 1646 aa41.8■■■■■ 4.28
LMNA-225ENST00000515824 ABCC9O60706 1549 aa41.11■■■■■ 4.17
LMNA-225ENST00000515824 DCAF8L2P0C7V8 631 aa39.54■■■■□ 3.92
LMNA-225ENST00000515824 RB1CC1Q8TDY2 1594 aa39.47■■■■□ 3.91
LMNA-225ENST00000515824 NACADO15069 1562 aa39.41■■■■□ 3.9
LMNA-225ENST00000515824 ZCCHC6Q5VYS8 1495 aaKnown RBP39.14■■■■□ 3.86
LMNA-225ENST00000515824 MYO15BQ96JP2 1530 aa39.14■■■■□ 3.86
LMNA-225ENST00000515824 DCAF1Q9Y4B6 1507 aa38.92■■■■□ 3.82
LMNA-225ENST00000515824 PABPN1Q86U42 306 aaKnown RBP eCLIP38.47■■■■□ 3.75
LMNA-225ENST00000515824 UNC13AQ9UPW8 1703 aa38.45■■■■□ 3.75
LMNA-225ENST00000515824 BICRAQ9NZM4 1560 aa38.23■■■■□ 3.71
LMNA-225ENST00000515824 SCRIBQ14160 1630 aa38.16■■■■□ 3.7
LMNA-225ENST00000515824 DNAJC5BQ9UF47 199 aa37.87■■■■□ 3.65
LMNA-225ENST00000515824 SHROOM4Q9ULL8 1493 aa37.86■■■■□ 3.65
LMNA-225ENST00000515824 EIF4G1Q04637 1599 aaKnown RBP37.27■■■■□ 3.56
LMNA-225ENST00000515824 CC2D2AQ9P2K1 1620 aa37.14■■■■□ 3.54
LMNA-225ENST00000515824 CECR2Q9BXF3 1484 aa36.96■■■■□ 3.51
LMNA-225ENST00000515824 SMARCA4P51532 1647 aa36.5■■■■□ 3.43
LMNA-225ENST00000515824 BAZ1AQ9NRL2 1556 aaPredicted RBP36.47■■■■□ 3.43
LMNA-225ENST00000515824 NCAPD3P42695 1498 aa36.4■■■■□ 3.42
LMNA-225ENST00000515824 ATAD2BQ9ULI0 1458 aa36.38■■■■□ 3.41
LMNA-225ENST00000515824 SMARCA2P51531 1590 aa36.32■■■■□ 3.41
LMNA-225ENST00000515824 MROH2BQ7Z745 1585 aa36.25■■■■□ 3.39
LMNA-225ENST00000515824 HMGXB3Q12766 1538 aa36.14■■■■□ 3.38
LMNA-225ENST00000515824 PEG3Q9GZU2 1588 aa36.14■■■■□ 3.38
LMNA-225ENST00000515824 BAZ1BQ9UIG0 1483 aaKnown RBP36.08■■■■□ 3.37
LMNA-225ENST00000515824 RSF1Q96T23 1441 aaPredicted RBP35.83■■■■□ 3.33
LMNA-225ENST00000515824 WIZO95785 1651 aa35.82■■■■□ 3.33
LMNA-225ENST00000515824 NESP48681 1621 aa35.51■■■■□ 3.28
LMNA-225ENST00000515824 ERCC6Q03468 1493 aa35.48■■■■□ 3.27
LMNA-225ENST00000515824 TOP2AP11388 1531 aaKnown RBP35.45■■■■□ 3.27
LMNA-225ENST00000515824 LAMC3Q9Y6N6 1575 aa35.42■■■■□ 3.26
LMNA-225ENST00000515824 CADPSQ9ULU8 1353 aa35.36■■■■□ 3.25
LMNA-225ENST00000515824 PDS5BQ9NTI5 1447 aa35.26■■■■□ 3.24
LMNA-225ENST00000515824 CUX2O14529 1486 aa35.11■■■■□ 3.21
LMNA-225ENST00000515824 CCDC88BA6NC98 1476 aa35.09■■■■□ 3.21
LMNA-225ENST00000515824 CFTRP13569 1480 aa35.09■■■■□ 3.21
LMNA-225ENST00000515824 KIF21AQ7Z4S6 1674 aa35.02■■■■□ 3.2
LMNA-225ENST00000515824 SUPT5HO00267 1087 aaKnown RBP34.94■■■■□ 3.18
LMNA-225ENST00000515824 THOC2Q8NI27 1593 aaKnown RBP34.94■■■■□ 3.18
LMNA-225ENST00000515824 FANCD2Q9BXW9 1451 aa34.91■■■■□ 3.18
LMNA-225ENST00000515824 CEP164Q9UPV0 1460 aa34.88■■■■□ 3.17
LMNA-225ENST00000515824 MRC2Q9UBG0 1479 aa34.84■■■■□ 3.17
LMNA-225ENST00000515824 WDR62O43379 1518 aa34.7■■■■□ 3.14
LMNA-225ENST00000515824 PRDM2Q13029 1718 aa34.67■■■■□ 3.14
LMNA-225ENST00000515824 URB2Q14146 1524 aaKnown RBP34.54■■■■□ 3.12
LMNA-225ENST00000515824 ABCC8Q09428 1581 aa34.37■■■■□ 3.09
LMNA-225ENST00000515824 TOPBP1Q92547 1522 aa34.32■■■■□ 3.08
LMNA-225ENST00000515824 DNMBPQ6XZF7 1577 aa34.26■■■■□ 3.07
LMNA-225ENST00000515824 DNAJC5Q9H3Z4 198 aa34.24■■■■□ 3.07
LMNA-225ENST00000515824 IFT140Q96RY7 1462 aa34.17■■■■□ 3.06
LMNA-225ENST00000515824 POLA1P09884 1462 aaPredicted RBP34.03■■■■□ 3.04
LMNA-225ENST00000515824 CUX1P39880 1505 aa34■■■■□ 3.03
LMNA-225ENST00000515824 ZNF608Q9ULD9 1512 aaPredicted RBP33.99■■■■□ 3.03
LMNA-225ENST00000515824 SOGA1O94964 1423 aa33.96■■■■□ 3.03
LMNA-225ENST00000515824 FGD5Q6ZNL6 1462 aa33.93■■■■□ 3.02
LMNA-225ENST00000515824 TARBP1Q13395 1621 aaKnown RBP33.91■■■■□ 3.02
LMNA-225ENST00000515824 RAD54L2Q9Y4B4 1467 aa33.9■■■■□ 3.02
LMNA-225ENST00000515824 AQRO60306 1485 aaKnown RBP eCLIP33.83■■■■□ 3.016e-7■■■■■ 28
LMNA-225ENST00000515824 WRNQ14191 1432 aaPredicted RBP eCLIP33.81■■■■□ 3
LMNA-225ENST00000515824 EIF4G3O43432 1585 aaKnown RBP33.8■■■■□ 3
LMNA-225ENST00000515824 TDRD9Q8NDG6 1382 aaKnown RBP33.77■■■■□ 3
LMNA-225ENST00000515824 OSCARQ8IYS5 282 aa33.75■■■□□ 2.99
LMNA-225ENST00000515824 TOP2BQ02880 1626 aa33.68■■■□□ 2.98
LMNA-225ENST00000515824 WDR97A6NE52 1622 aa33.66■■■□□ 2.98
LMNA-225ENST00000515824 BIVM-ERCC5R4GMW8 1640 aa33.64■■■□□ 2.98
LMNA-225ENST00000515824 SYNJ1O43426 1573 aa33.64■■■□□ 2.98
LMNA-225ENST00000515824 ABCA10Q8WWZ4 1543 aa33.6■■■□□ 2.97
LMNA-225ENST00000515824 FBLN2P98095 1184 aa33.54■■■□□ 2.96
LMNA-225ENST00000515824 GRIN2BQ13224 1484 aa33.54■■■□□ 2.96
LMNA-225ENST00000515824 GAPVD1Q14C86 1478 aa33.53■■■□□ 2.96
LMNA-225ENST00000515824 SNAPC4Q5SXM2 1469 aa33.48■■■□□ 2.95
LMNA-225ENST00000515824 MAGI1Q96QZ7 1491 aaPredicted RBP33.44■■■□□ 2.94
LMNA-225ENST00000515824 CHMP7Q8WUX9 453 aaPredicted RBP33.43■■■□□ 2.94
LMNA-225ENST00000515824 ABCA5Q8WWZ7 1642 aa33.41■■■□□ 2.94
LMNA-225ENST00000515824 CHD1O14646 1710 aa33.36■■■□□ 2.93
LMNA-225ENST00000515824 PBRM1Q86U86 1689 aa33.34■■■□□ 2.93
LMNA-225ENST00000515824 SYNJ2O15056 1496 aa33.32■■■□□ 2.92
LMNA-225ENST00000515824 ERICH3Q5RHP9 1530 aa33.19■■■□□ 2.9
LMNA-225ENST00000515824 FHAD1B1AJZ9 1412 aa33.15■■■□□ 2.9
LMNA-225ENST00000515824 KIF27Q86VH2 1401 aa33.13■■■□□ 2.89
LMNA-225ENST00000515824 ADAMTS12P58397 1594 aa33.11■■■□□ 2.89
LMNA-225ENST00000515824 TRIM41Q8WV44 630 aa33.09■■■□□ 2.89
LMNA-225ENST00000515824 GRIN2AQ12879 1464 aa33.08■■■□□ 2.89
LMNA-225ENST00000515824 ARHGEF11O15085 1522 aa33.07■■■□□ 2.88
LMNA-225ENST00000515824 RIMBP3CA6NJZ7 1639 aa33.06■■■□□ 2.88
LMNA-225ENST00000515824 RIMBP3BA6NNM3 1639 aa33.06■■■□□ 2.88
LMNA-225ENST00000515824 RIMBP3Q9UFD9 1639 aa33.06■■■□□ 2.88
LMNA-225ENST00000515824 CLASP1Q7Z460 1538 aa33.04■■■□□ 2.88
LMNA-225ENST00000515824 IGF1RP08069 1367 aa33.02■■■□□ 2.88
LMNA-225ENST00000515824 NUP160Q12769 1436 aa32.94■■■□□ 2.86
LMNA-225ENST00000515824 CYB5RLQ6IPT4 315 aa32.9■■■□□ 2.86
LMNA-225ENST00000515824 CEP170Q5SW79 1584 aa32.87■■■□□ 2.85
LMNA-225ENST00000515824 CUL7Q14999 1698 aa32.84■■■□□ 2.85
LMNA-225ENST00000515824 CARMIL1Q5VZK9 1371 aa32.83■■■□□ 2.85
LMNA-225ENST00000515824 ARAP1Q96P48 1450 aa32.79■■■□□ 2.84
LMNA-225ENST00000515824 RUSC2Q8N2Y8 1516 aa32.74■■■□□ 2.83
LMNA-225ENST00000515824 JPH4Q96JJ6 628 aa32.71■■■□□ 2.83
LMNA-225ENST00000515824 SHROOM2Q13796 1616 aa32.63■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms