RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 PCF11O94913 1555 aaKnown RBP9.41□□□□□ -0.9
NIPBL-208ENST00000514335 SAMD9Q5K651 1589 aa9.41□□□□□ -0.9
NIPBL-208ENST00000514335 ARMCX6Q7L4S7 300 aa9.41□□□□□ -0.9
NIPBL-208ENST00000514335 TTC36A6NLP5 189 aa9.4□□□□□ -0.9
NIPBL-208ENST00000514335 SPTY2D1Q68D10 685 aaPredicted RBP9.4□□□□□ -0.9
NIPBL-208ENST00000514335 PPP4R3BQ5MIZ7 849 aa9.39□□□□□ -0.91
NIPBL-208ENST00000514335 ANP32BQ92688 251 aaKnown RBP9.39□□□□□ -0.91
NIPBL-208ENST00000514335 ASXL2Q76L83 1435 aa9.39□□□□□ -0.91
NIPBL-208ENST00000514335 WASHC2AQ641Q2 1341 aa9.39□□□□□ -0.91
NIPBL-208ENST00000514335 MFAP1P55081 439 aaKnown RBP9.39□□□□□ -0.91
NIPBL-208ENST00000514335 CCDC96Q2M329 555 aa9.39□□□□□ -0.91
NIPBL-208ENST00000514335 DDRGK1Q96HY6 314 aa9.39□□□□□ -0.91
NIPBL-208ENST00000514335 PDCL3Q9H2J4 239 aa9.39□□□□□ -0.91
NIPBL-208ENST00000514335 NOP58Q9Y2X3 529 aaKnown RBP9.39□□□□□ -0.91
NIPBL-208ENST00000514335 RICTORQ6R327 1708 aa9.39□□□□□ -0.91
NIPBL-208ENST00000514335 APBB1O00213 710 aa9.38□□□□□ -0.91
NIPBL-208ENST00000514335 EP400NLQ6ZTU2 488 aa9.38□□□□□ -0.91
NIPBL-208ENST00000514335 POLD1P28340 1107 aa9.38□□□□□ -0.91
NIPBL-208ENST00000514335 CCER1Q8TC90 406 aaPredicted RBP9.38□□□□□ -0.91
NIPBL-208ENST00000514335 EVI5LQ96CN4 794 aa9.38□□□□□ -0.91
NIPBL-208ENST00000514335 FRMPD1Q5SYB0 1578 aa9.38□□□□□ -0.91
NIPBL-208ENST00000514335 SPINK5Q9NQ38 1064 aaPredicted RBP9.37□□□□□ -0.91
NIPBL-208ENST00000514335 LMTK3Q96Q04 1460 aa9.37□□□□□ -0.91
NIPBL-208ENST00000514335 FHOD3Q2V2M9 1422 aa9.36□□□□□ -0.91
NIPBL-208ENST00000514335 SMARCA5O60264 1052 aaPredicted RBP9.36□□□□□ -0.91
NIPBL-208ENST00000514335 TSHZ1Q6ZSZ6 1077 aa9.36□□□□□ -0.91
NIPBL-208ENST00000514335 ZNF142P52746 1687 aaPredicted RBP9.36□□□□□ -0.91
NIPBL-208ENST00000514335 PAK3O75914 559 aaPredicted RBP9.36□□□□□ -0.91
NIPBL-208ENST00000514335 STK26Q9P289 416 aa9.36□□□□□ -0.91
NIPBL-208ENST00000514335 FER1L4A9Z1Z3 1794 aa9.36□□□□□ -0.91
NIPBL-208ENST00000514335 AGLP35573 1532 aa9.36□□□□□ -0.91
NIPBL-208ENST00000514335 CCDC125Q86Z20 511 aa9.35□□□□□ -0.91
NIPBL-208ENST00000514335 STK24Q9Y6E0 443 aa9.35□□□□□ -0.91
NIPBL-208ENST00000514335 SOCS7O14512 581 aa9.35□□□□□ -0.91
NIPBL-208ENST00000514335 DNTTIP2Q5QJE6 756 aaKnown RBP9.35□□□□□ -0.91
NIPBL-208ENST00000514335 ZNF513Q8N8E2 541 aaPredicted RBP9.35□□□□□ -0.91
NIPBL-208ENST00000514335 PTPRTO14522 1441 aa9.34□□□□□ -0.91
NIPBL-208ENST00000514335 ZNF500O60304 480 aaPredicted RBP9.34□□□□□ -0.91
NIPBL-208ENST00000514335 JPH4Q96JJ6 628 aa9.34□□□□□ -0.91
NIPBL-208ENST00000514335 PTPRGP23470 1445 aa9.34□□□□□ -0.91
NIPBL-208ENST00000514335 KDM4FA0A1W2PPD8 638 aa9.34□□□□□ -0.91
NIPBL-208ENST00000514335 ARID4AP29374 1257 aaPredicted RBP9.34□□□□□ -0.91
NIPBL-208ENST00000514335 ARHGEF12Q9NZN5 1544 aa9.34□□□□□ -0.91
NIPBL-208ENST00000514335 ZBTB12Q9Y330 459 aaPredicted RBP9.34□□□□□ -0.91
NIPBL-208ENST00000514335 NME8Q8N427 588 aa9.33□□□□□ -0.92
NIPBL-208ENST00000514335 RALBP1Q15311 655 aa9.33□□□□□ -0.92
NIPBL-208ENST00000514335 NOL8Q76FK4 1167 aaKnown RBP9.33□□□□□ -0.92
NIPBL-208ENST00000514335 APBB1IPQ7Z5R6 666 aaPredicted RBP9.33□□□□□ -0.92
NIPBL-208ENST00000514335 CEP120Q8N960 986 aa9.32□□□□□ -0.92
NIPBL-208ENST00000514335 SMAP1Q8IYB5 467 aaPredicted RBP9.32□□□□□ -0.92
NIPBL-208ENST00000514335 OTUD6BQ8N6M0 293 aa9.32□□□□□ -0.92
NIPBL-208ENST00000514335 IGF1RP08069 1367 aa9.32□□□□□ -0.92
NIPBL-208ENST00000514335 TCERG1O14776 1098 aaKnown RBP9.31□□□□□ -0.92
NIPBL-208ENST00000514335 FOXD4Q12950 439 aaPredicted RBP9.31□□□□□ -0.92
NIPBL-208ENST00000514335 TMCO4Q5TGY1 634 aa9.31□□□□□ -0.92
NIPBL-208ENST00000514335 RPS6KL1Q9Y6S9 549 aa9.31□□□□□ -0.92
NIPBL-208ENST00000514335 FANCAO15360 1455 aa9.3□□□□□ -0.92
NIPBL-208ENST00000514335 RAPGEF2Q9Y4G8 1499 aa9.3□□□□□ -0.92
NIPBL-208ENST00000514335 HSP90AB3PQ58FF7 597 aa9.3□□□□□ -0.92
NIPBL-208ENST00000514335 TERF2IPQ9NYB0 399 aa9.3□□□□□ -0.92
NIPBL-208ENST00000514335 CT47B1P0C2W7 299 aaPredicted RBP9.29□□□□□ -0.92
NIPBL-208ENST00000514335 CASC1Q6TDU7 716 aa9.28□□□□□ -0.92
NIPBL-208ENST00000514335 MIER1Q8N108 512 aa9.28□□□□□ -0.92
NIPBL-208ENST00000514335 RNF217Q8TC41 542 aa9.28□□□□□ -0.92
NIPBL-208ENST00000514335 GZF1Q9H116 711 aaPredicted RBP9.28□□□□□ -0.92
NIPBL-208ENST00000514335 GPBP1L1Q9HC44 474 aaPredicted RBP9.28□□□□□ -0.92
NIPBL-208ENST00000514335 POGZQ7Z3K3 1410 aa9.28□□□□□ -0.92
NIPBL-208ENST00000514335 KDM5CP41229 1560 aa9.28□□□□□ -0.92
NIPBL-208ENST00000514335 MYBPC2Q14324 1141 aa9.28□□□□□ -0.92
NIPBL-208ENST00000514335 NBPF9Q3BBW0 867 aa9.28□□□□□ -0.92
NIPBL-208ENST00000514335 ATL2Q8NHH9 583 aa9.28□□□□□ -0.92
NIPBL-208ENST00000514335 TRIM44Q96DX7 344 aaPredicted RBP9.28□□□□□ -0.92
NIPBL-208ENST00000514335 KIF21BO75037 1637 aa9.28□□□□□ -0.92
NIPBL-208ENST00000514335 BORCS6Q96GS4 357 aa9.28□□□□□ -0.92
NIPBL-208ENST00000514335 RRAGDQ9NQL2 400 aaPredicted RBP9.27□□□□□ -0.93
NIPBL-208ENST00000514335 PTPRMP28827 1452 aa9.27□□□□□ -0.93
NIPBL-208ENST00000514335 GOLIM4O00461 696 aa9.27□□□□□ -0.93
NIPBL-208ENST00000514335 UTP14CQ5TAP6 766 aaKnown RBP9.27□□□□□ -0.93
NIPBL-208ENST00000514335 ZBTB9Q96C00 473 aa9.27□□□□□ -0.93
NIPBL-208ENST00000514335 ITGAEP38570 1179 aa9.26□□□□□ -0.93
NIPBL-208ENST00000514335 TESPA1A2RU30 521 aaPredicted RBP9.26□□□□□ -0.93
NIPBL-208ENST00000514335 CCER2I3L3R5 266 aa9.26□□□□□ -0.93
NIPBL-208ENST00000514335 MARCH6O60337 910 aa9.26□□□□□ -0.93
NIPBL-208ENST00000514335 RAPGEF6Q8TEU7 1601 aa9.26□□□□□ -0.93
NIPBL-208ENST00000514335 TSPOAP1O95153 1857 aa9.26□□□□□ -0.93
NIPBL-208ENST00000514335 SSFA2P28290 1259 aa9.25□□□□□ -0.93
NIPBL-208ENST00000514335 MAP2K1Q02750 393 aaPredicted RBP9.25□□□□□ -0.93
NIPBL-208ENST00000514335 ARHGEF1Q92888 912 aaKnown RBP9.25□□□□□ -0.93
NIPBL-208ENST00000514335 EEA1Q15075 1411 aa9.25□□□□□ -0.93
NIPBL-208ENST00000514335 DHX16O60231 1041 aaKnown RBP9.25□□□□□ -0.93
NIPBL-208ENST00000514335 BANK1Q8NDB2 785 aa9.25□□□□□ -0.93
NIPBL-208ENST00000514335 FOXD4L1Q9NU39 408 aa9.25□□□□□ -0.93
NIPBL-208ENST00000514335 GEMIN8Q9NWZ8 242 aaKnown RBP9.25□□□□□ -0.93
NIPBL-208ENST00000514335 RBM26Q5T8P6 1007 aaKnown RBP9.24□□□□□ -0.93
NIPBL-208ENST00000514335 RBM27Q9P2N5 1060 aaKnown RBP9.24□□□□□ -0.93
NIPBL-208ENST00000514335 SCP2P22307 547 aa9.24□□□□□ -0.93
NIPBL-208ENST00000514335 KAT6BQ8WYB5 2073 aa9.23□□□□□ -0.93
NIPBL-208ENST00000514335 DMTNQ08495 405 aa9.23□□□□□ -0.93
NIPBL-208ENST00000514335 NEUROD2Q15784 382 aa9.23□□□□□ -0.93
NIPBL-208ENST00000514335 CCDC82Q8N4S0 544 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms