RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 NISCHQ9Y2I1 1504 aa13.88□□□□□ -0.19
NIPBL-208ENST00000514335 SLC24A1O60721 1099 aa13.79□□□□□ -0.2
NIPBL-208ENST00000514335 PELP1Q8IZL8 1130 aaKnown RBP13.3□□□□□ -0.28
NIPBL-208ENST00000514335 CCDC180Q9P1Z9 1646 aa13.29□□□□□ -0.28
NIPBL-208ENST00000514335 MYT1Q01538 1121 aa13.27□□□□□ -0.28
NIPBL-208ENST00000514335 PRKCSHP14314 528 aaPredicted RBP13.25□□□□□ -0.29
NIPBL-208ENST00000514335 CHIC1Q5VXU3 224 aa13.04□□□□□ -0.32
NIPBL-208ENST00000514335 AEBP2Q6ZN18 517 aaPredicted RBP13.02□□□□□ -0.32
NIPBL-208ENST00000514335 TTBK1Q5TCY1 1321 aaPredicted RBP13.01□□□□□ -0.33
NIPBL-208ENST00000514335 APLP2Q06481 763 aa12.92□□□□□ -0.34
NIPBL-208ENST00000514335 DAXXQ9UER7 740 aaPredicted RBP12.81□□□□□ -0.36
NIPBL-208ENST00000514335 ERICH6Q7L0X2 663 aa12.74□□□□□ -0.37
NIPBL-208ENST00000514335 SHROOM4Q9ULL8 1493 aa12.62□□□□□ -0.39
NIPBL-208ENST00000514335 MYO15BQ96JP2 1530 aa12.58□□□□□ -0.39
NIPBL-208ENST00000514335 NACADO15069 1562 aa12.39□□□□□ -0.43
NIPBL-208ENST00000514335 RB1CC1Q8TDY2 1594 aa12.39□□□□□ -0.43
NIPBL-208ENST00000514335 BCL11AQ9H165 835 aa12.28□□□□□ -0.44
NIPBL-208ENST00000514335 PLPPR3Q6T4P5 718 aa12.26□□□□□ -0.45
NIPBL-208ENST00000514335 ABCC9O60706 1549 aa12.21□□□□□ -0.46
NIPBL-208ENST00000514335 EIF5BO60841 1220 aaKnown RBP12.2□□□□□ -0.46
NIPBL-208ENST00000514335 DCAF1Q9Y4B6 1507 aa12.15□□□□□ -0.46
NIPBL-208ENST00000514335 NCBP3Q53F19 620 aaKnown RBP12.14□□□□□ -0.47
NIPBL-208ENST00000514335 FAM9AQ8IZU1 332 aaPredicted RBP12.12□□□□□ -0.47
NIPBL-208ENST00000514335 EHMT2Q96KQ7 1210 aa12.11□□□□□ -0.47
NIPBL-208ENST00000514335 PLEKHG5O94827 1062 aa12.1□□□□□ -0.47
NIPBL-208ENST00000514335 RTN4Q9NQC3 1192 aaKnown RBP12.1□□□□□ -0.47
NIPBL-208ENST00000514335 UNC13AQ9UPW8 1703 aa11.97□□□□□ -0.49
NIPBL-208ENST00000514335 KLHL34Q8N239 644 aa11.87□□□□□ -0.51
NIPBL-208ENST00000514335 TIMELESSQ9UNS1 1208 aa11.87□□□□□ -0.51
NIPBL-208ENST00000514335 BICRAQ9NZM4 1560 aa11.85□□□□□ -0.51
NIPBL-208ENST00000514335 PHF23Q9BUL5 403 aaPredicted RBP11.82□□□□□ -0.52
NIPBL-208ENST00000514335 ARXQ96QS3 562 aa11.76□□□□□ -0.53
NIPBL-208ENST00000514335 PODXL2Q9NZ53 605 aa11.65□□□□□ -0.54
NIPBL-208ENST00000514335 RANGAP1P46060 587 aaPredicted RBP11.61□□□□□ -0.55
NIPBL-208ENST00000514335 SCAF1Q9H7N4 1312 aaKnown RBP11.61□□□□□ -0.55
NIPBL-208ENST00000514335 CUX2O14529 1486 aa11.61□□□□□ -0.55
NIPBL-208ENST00000514335 TULP1O00294 542 aaPredicted RBP11.6□□□□□ -0.55
NIPBL-208ENST00000514335 ZCCHC6Q5VYS8 1495 aaKnown RBP11.56□□□□□ -0.56
NIPBL-208ENST00000514335 EIF4G1Q04637 1599 aaKnown RBP11.52□□□□□ -0.57
NIPBL-208ENST00000514335 CC2D2AQ9P2K1 1620 aa11.52□□□□□ -0.57
NIPBL-208ENST00000514335 DNAJC5Q9H3Z4 198 aa11.48□□□□□ -0.57
NIPBL-208ENST00000514335 UBE2Q2Q8WVN8 375 aa11.46□□□□□ -0.57
NIPBL-208ENST00000514335 DNAJC5BQ9UF47 199 aa11.45□□□□□ -0.58
NIPBL-208ENST00000514335 AMER1Q5JTC6 1135 aaPredicted RBP11.39□□□□□ -0.59
NIPBL-208ENST00000514335 CECR2Q9BXF3 1484 aa11.38□□□□□ -0.59
NIPBL-208ENST00000514335 HOMEZQ8IX15 550 aa11.37□□□□□ -0.59
NIPBL-208ENST00000514335 SMARCA2P51531 1590 aa11.37□□□□□ -0.59
NIPBL-208ENST00000514335 HMGXB3Q12766 1538 aa11.35□□□□□ -0.59
NIPBL-208ENST00000514335 ANO8Q9HCE9 1232 aaPredicted RBP11.35□□□□□ -0.59
NIPBL-208ENST00000514335 KCNA4P22459 653 aa11.33□□□□□ -0.6
NIPBL-208ENST00000514335 CENPBP07199 599 aaPredicted RBP11.32□□□□□ -0.6
NIPBL-208ENST00000514335 PDIA4P13667 645 aaKnown RBP11.32□□□□□ -0.6
NIPBL-208ENST00000514335 HRCP23327 699 aa11.32□□□□□ -0.6
NIPBL-208ENST00000514335 PEG3Q9GZU2 1588 aa11.31□□□□□ -0.6
NIPBL-208ENST00000514335 PKNOX2Q96KN3 472 aa11.29□□□□□ -0.6
NIPBL-208ENST00000514335 TAOK2Q9UL54 1235 aa11.28□□□□□ -0.6
NIPBL-208ENST00000514335 NCAPD3P42695 1498 aa11.24□□□□□ -0.61
NIPBL-208ENST00000514335 PDE4CQ08493 712 aa11.2□□□□□ -0.62
NIPBL-208ENST00000514335 NPM2Q86SE8 214 aaKnown RBP11.18□□□□□ -0.62
NIPBL-208ENST00000514335 LOC105371045A0A1W2PR82 267 aa11.17□□□□□ -0.62
NIPBL-208ENST00000514335 LAMC3Q9Y6N6 1575 aa11.16□□□□□ -0.62
NIPBL-208ENST00000514335 TPRNQ4KMQ1 711 aa11.13□□□□□ -0.63
NIPBL-208ENST00000514335 THOC2Q8NI27 1593 aaKnown RBP11.12□□□□□ -0.63
NIPBL-208ENST00000514335 C14orf37Q86TY3 774 aa11.1□□□□□ -0.63
NIPBL-208ENST00000514335 ANP32EQ9BTT0 268 aa11.1□□□□□ -0.63
NIPBL-208ENST00000514335 DHX37Q8IY37 1157 aaKnown RBP11.08□□□□□ -0.64
NIPBL-208ENST00000514335 HAP1P54257 671 aaPredicted RBP11.07□□□□□ -0.64
NIPBL-208ENST00000514335 CSRNP3Q8WYN3 585 aa11.07□□□□□ -0.64
NIPBL-208ENST00000514335 BCL11BQ9C0K0 894 aaPredicted RBP11.07□□□□□ -0.64
NIPBL-208ENST00000514335 CHMP4AQ9BY43 222 aa11.06□□□□□ -0.64
NIPBL-208ENST00000514335 NEFLP07196 543 aa11.04□□□□□ -0.64
NIPBL-208ENST00000514335 SCRIBQ14160 1630 aa11.01□□□□□ -0.65
NIPBL-208ENST00000514335 WDR97A6NE52 1622 aa11.01□□□□□ -0.65
NIPBL-208ENST00000514335 PPARGC1BQ86YN6 1023 aaKnown RBP10.99□□□□□ -0.65
NIPBL-208ENST00000514335 GTF3C3Q9Y5Q9 886 aa10.99□□□□□ -0.65
NIPBL-208ENST00000514335 PRDM2Q13029 1718 aa10.97□□□□□ -0.65
NIPBL-208ENST00000514335 SAMD1Q6SPF0 538 aaPredicted RBP10.96□□□□□ -0.65
NIPBL-208ENST00000514335 FGD1P98174 961 aa10.96□□□□□ -0.66
NIPBL-208ENST00000514335 CCDC136Q96JN2 1154 aa10.96□□□□□ -0.66
NIPBL-208ENST00000514335 WDR62O43379 1518 aa10.96□□□□□ -0.66
NIPBL-208ENST00000514335 SMARCA4P51532 1647 aa10.95□□□□□ -0.66
NIPBL-208ENST00000514335 BAZ1AQ9NRL2 1556 aaPredicted RBP10.94□□□□□ -0.66
NIPBL-208ENST00000514335 SALL2Q9Y467 1007 aaPredicted RBP10.93□□□□□ -0.66
NIPBL-208ENST00000514335 TRIM26Q12899 539 aaPredicted RBP10.93□□□□□ -0.66
NIPBL-208ENST00000514335 TAF7LQ5H9L4 462 aa10.92□□□□□ -0.66
NIPBL-208ENST00000514335 ATAD2BQ9ULI0 1458 aa10.9□□□□□ -0.67
NIPBL-208ENST00000514335 BCANQ96GW7 911 aa10.88□□□□□ -0.67
NIPBL-208ENST00000514335 BAZ1BQ9UIG0 1483 aaKnown RBP10.87□□□□□ -0.67
NIPBL-208ENST00000514335 A0A0U1RQG5 324 aaPredicted RBP10.86□□□□□ -0.67
NIPBL-208ENST00000514335 PABPN1Q86U42 306 aaKnown RBP eCLIP10.84□□□□□ -0.67
NIPBL-208ENST00000514335 BRD2P25440 801 aaKnown RBP10.82□□□□□ -0.68
NIPBL-208ENST00000514335 PDS5BQ9NTI5 1447 aa10.8□□□□□ -0.68
NIPBL-208ENST00000514335 MRC2Q9UBG0 1479 aa10.78□□□□□ -0.68
NIPBL-208ENST00000514335 ACIN1Q9UKV3 1341 aaKnown RBP10.77□□□□□ -0.69
NIPBL-208ENST00000514335 PAXIP1Q6ZW49 1069 aaPredicted RBP10.75□□□□□ -0.69
NIPBL-208ENST00000514335 AAMPQ13685 434 aa10.75□□□□□ -0.69
NIPBL-208ENST00000514335 FBXO3Q9UK99 471 aa10.75□□□□□ -0.69
NIPBL-208ENST00000514335 ERCC6Q03468 1493 aa10.74□□□□□ -0.69
NIPBL-208ENST00000514335 TMEM132AQ24JP5 1023 aa10.73□□□□□ -0.69
NIPBL-208ENST00000514335 KIF21AQ7Z4S6 1674 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms