RNA–Protein interactions for RNA: ENST00000512340.5

NR1I3-231, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 891 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-231	ENST00000512340	SCAF11	Q99590	1463 aa	Known RBP	10.92	□□□□□ -0.66
NR1I3-231	ENST00000512340	SPHKAP	Q2M3C7	1700 aa		10.92	□□□□□ -0.66
NR1I3-231	ENST00000512340	UBR1	Q8IWV7	1749 aa		10.92	□□□□□ -0.66
NR1I3-231	ENST00000512340	NPHP4	O75161	1426 aa	Predicted RBP	10.92	□□□□□ -0.66
NR1I3-231	ENST00000512340	PIK3C2B	O00750	1634 aa		10.91	□□□□□ -0.66
NR1I3-231	ENST00000512340	RPGRIP1L	Q68CZ1	1315 aa		10.9	□□□□□ -0.66
NR1I3-231	ENST00000512340	SLIT1	O75093	1534 aa		10.9	□□□□□ -0.66
NR1I3-231	ENST00000512340	TRPM2	O94759	1503 aa		10.9	□□□□□ -0.66
NR1I3-231	ENST00000512340	POLR1A	O95602	1720 aa	Predicted RBP	10.89	□□□□□ -0.67
NR1I3-231	ENST00000512340	ARHGAP23	Q9P227	1491 aa		10.89	□□□□□ -0.67
NR1I3-231	ENST00000512340	VGF	O15240	615 aa	Predicted RBP	10.89	□□□□□ -0.67
NR1I3-231	ENST00000512340	MED14	O60244	1454 aa		10.88	□□□□□ -0.67
NR1I3-231	ENST00000512340	RIMS2	Q9UQ26	1411 aa		10.88	□□□□□ -0.67
NR1I3-231	ENST00000512340	KIF1B	O60333	1816 aa		10.88	□□□□□ -0.67
NR1I3-231	ENST00000512340	MED1	Q15648	1581 aa	Predicted RBP	10.87	□□□□□ -0.67
NR1I3-231	ENST00000512340	FOXD1	Q16676	465 aa		10.87	□□□□□ -0.67
NR1I3-231	ENST00000512340	LTK	P29376	864 aa		10.86	□□□□□ -0.67
NR1I3-231	ENST00000512340	STAC3	Q96MF2	364 aa		10.86	□□□□□ -0.67
NR1I3-231	ENST00000512340	TMEM131L	A2VDJ0	1609 aa		10.86	□□□□□ -0.67
NR1I3-231	ENST00000512340	PLEKHG1	Q9ULL1	1385 aa		10.86	□□□□□ -0.67
NR1I3-231	ENST00000512340	IQGAP1	P46940	1657 aa		10.85	□□□□□ -0.67
NR1I3-231	ENST00000512340	HSPA1L	P34931	641 aa		10.84	□□□□□ -0.67
NR1I3-231	ENST00000512340	PHF23	Q9BUL5	403 aa	Predicted RBP	10.84	□□□□□ -0.67
NR1I3-231	ENST00000512340	ANKRD30B	Q9BXX2	1392 aa		10.84	□□□□□ -0.67
NR1I3-231	ENST00000512340	SCAF1	Q9H7N4	1312 aa	Known RBP	10.84	□□□□□ -0.67
NR1I3-231	ENST00000512340	RGL3	Q3MIN7	710 aa		10.83	□□□□□ -0.68
NR1I3-231	ENST00000512340	TBX22	Q9Y458	520 aa		10.83	□□□□□ -0.68
NR1I3-231	ENST00000512340	CLTCL1	P53675	1640 aa		10.83	□□□□□ -0.68
NR1I3-231	ENST00000512340	ZFYVE9	O95405	1425 aa		10.83	□□□□□ -0.68
NR1I3-231	ENST00000512340	NEURL4	Q96JN8	1562 aa		10.82	□□□□□ -0.68
NR1I3-231	ENST00000512340	SLC26A8	Q96RN1	970 aa		10.82	□□□□□ -0.68
NR1I3-231	ENST00000512340	PIK3R4	Q99570	1358 aa		10.81	□□□□□ -0.68
NR1I3-231	ENST00000512340	KCNA6	P17658	529 aa		10.81	□□□□□ -0.68
NR1I3-231	ENST00000512340	PIP4K2B	P78356	416 aa		10.81	□□□□□ -0.68
NR1I3-231	ENST00000512340	NUTM2D	Q5VT03	806 aa	Predicted RBP	10.81	□□□□□ -0.68
NR1I3-231	ENST00000512340	MYO5B	Q9ULV0	1848 aa		10.81	□□□□□ -0.68
NR1I3-231	ENST00000512340	DIP2A	Q14689	1571 aa		10.8	□□□□□ -0.68
NR1I3-231	ENST00000512340	PCGF6	Q9BYE7	350 aa		10.79	□□□□□ -0.68
NR1I3-231	ENST00000512340	PROSER2	Q86WR7	435 aa	Predicted RBP	10.78	□□□□□ -0.68
NR1I3-231	ENST00000512340	C14orf37	Q86TY3	774 aa		10.77	□□□□□ -0.69
NR1I3-231	ENST00000512340	SPATA31E1	Q6ZUB1	1445 aa		10.76	□□□□□ -0.69
NR1I3-231	ENST00000512340	NEXMIF	Q5QGS0	1516 aa		10.76	□□□□□ -0.69
NR1I3-231	ENST00000512340	DCAF11	Q8TEB1	546 aa		10.76	□□□□□ -0.69
NR1I3-231	ENST00000512340	SENP3	Q9H4L4	574 aa	Predicted RBP	10.76	□□□□□ -0.69
NR1I3-231	ENST00000512340	NKTR	P30414	1462 aa	Known RBP	10.74	□□□□□ -0.69
NR1I3-231	ENST00000512340	SETBP1	Q9Y6X0	1596 aa		10.74	□□□□□ -0.69
NR1I3-231	ENST00000512340	AMOTL2	Q9Y2J4	779 aa		10.74	□□□□□ -0.69
NR1I3-231	ENST00000512340	KDM2A	Q9Y2K7	1162 aa		10.74	□□□□□ -0.69
NR1I3-231	ENST00000512340	PPL	O60437	1756 aa		10.73	□□□□□ -0.69
NR1I3-231	ENST00000512340	NEUROD1	Q13562	356 aa		10.73	□□□□□ -0.69
NR1I3-231	ENST00000512340	MSH6	P52701	1360 aa		10.73	□□□□□ -0.69
NR1I3-231	ENST00000512340	DHX57	Q6P158	1386 aa	Known RBP	10.73	□□□□□ -0.69
NR1I3-231	ENST00000512340	ADAMTS13	Q76LX8	1427 aa		10.73	□□□□□ -0.69
NR1I3-231	ENST00000512340	NCOA3	Q9Y6Q9	1424 aa		10.73	□□□□□ -0.69
NR1I3-231	ENST00000512340	CLSPN	Q9HAW4	1339 aa		10.72	□□□□□ -0.69
NR1I3-231	ENST00000512340	MYOM2	P54296	1465 aa		10.72	□□□□□ -0.69
NR1I3-231	ENST00000512340	LRRC7	Q96NW7	1537 aa		10.72	□□□□□ -0.69
NR1I3-231	ENST00000512340	ADGRF5	Q8IZF2	1346 aa		10.71	□□□□□ -0.69
NR1I3-231	ENST00000512340	ALK	Q9UM73	1620 aa		10.71	□□□□□ -0.69
NR1I3-231	ENST00000512340	TMEM94	Q12767	1356 aa		10.7	□□□□□ -0.7
NR1I3-231	ENST00000512340	TONSL	Q96HA7	1378 aa		10.7	□□□□□ -0.7
NR1I3-231	ENST00000512340	ATF3	P18847	181 aa		10.7	□□□□□ -0.7
NR1I3-231	ENST00000512340	CADPS2	Q86UW7	1296 aa		10.7	□□□□□ -0.7
NR1I3-231	ENST00000512340	C14orf93	Q9H972	538 aa	Known RBP	10.7	□□□□□ -0.7
NR1I3-231	ENST00000512340	CHD2	O14647	1828 aa	Known RBP	10.7	□□□□□ -0.7
NR1I3-231	ENST00000512340	CCER1	Q8TC90	406 aa	Predicted RBP	10.69	□□□□□ -0.7
NR1I3-231	ENST00000512340	C19orf44	Q9H6X5	657 aa		10.69	□□□□□ -0.7
NR1I3-231	ENST00000512340	LAMC1	P11047	1609 aa		10.69	□□□□□ -0.7
NR1I3-231	ENST00000512340	NWD1	Q149M9	1564 aa		10.69	□□□□□ -0.7
NR1I3-231	ENST00000512340	PIK3C2G	O75747	1445 aa		10.68	□□□□□ -0.7
NR1I3-231	ENST00000512340	MET	P08581	1390 aa		10.68	□□□□□ -0.7
NR1I3-231	ENST00000512340	FAM135B	Q49AJ0	1406 aa		10.67	□□□□□ -0.7
NR1I3-231	ENST00000512340	SIRT1	Q96EB6	747 aa		10.67	□□□□□ -0.7
NR1I3-231	ENST00000512340	STK26	Q9P289	416 aa		10.67	□□□□□ -0.7
NR1I3-231	ENST00000512340	TIMELESS	Q9UNS1	1208 aa		10.67	□□□□□ -0.7
NR1I3-231	ENST00000512340	IFT172	Q9UG01	1749 aa		10.67	□□□□□ -0.7
NR1I3-231	ENST00000512340	LRPPRC	P42704	1394 aa	Known RBP	10.66	□□□□□ -0.7
NR1I3-231	ENST00000512340	CFAP70	Q5T0N1	1121 aa		10.66	□□□□□ -0.7
NR1I3-231	ENST00000512340	SIN3A	Q96ST3	1273 aa		10.66	□□□□□ -0.7
NR1I3-231	ENST00000512340	POGK	Q9P215	609 aa		10.66	□□□□□ -0.7
NR1I3-231	ENST00000512340	NRXN1	Q9ULB1	1477 aa		10.66	□□□□□ -0.7
NR1I3-231	ENST00000512340	PTCH1	Q13635	1447 aa		10.66	□□□□□ -0.7
NR1I3-231	ENST00000512340	NRXN3	Q9Y4C0	1643 aa		10.66	□□□□□ -0.7
NR1I3-231	ENST00000512340	ABCC11	Q96J66	1382 aa		10.65	□□□□□ -0.7
NR1I3-231	ENST00000512340	L3MBTL2	Q969R5	705 aa		10.65	□□□□□ -0.7
NR1I3-231	ENST00000512340	STRCP1	A6NGW2	1772 aa		10.65	□□□□□ -0.71
NR1I3-231	ENST00000512340	TMEM132E	Q6IEE7	984 aa		10.64	□□□□□ -0.71
NR1I3-231	ENST00000512340	DCC	P43146	1447 aa		10.64	□□□□□ -0.71
NR1I3-231	ENST00000512340	YTHDC2	Q9H6S0	1430 aa	Known RBP	10.64	□□□□□ -0.71
NR1I3-231	ENST00000512340	SLAIN2	Q9P270	581 aa		10.63	□□□□□ -0.71
NR1I3-231	ENST00000512340	PRAG1	Q86YV5	1406 aa		10.63	□□□□□ -0.71
NR1I3-231	ENST00000512340	PTPRU	Q92729	1446 aa		10.63	□□□□□ -0.71
NR1I3-231	ENST00000512340	XRN1	Q8IZH2	1706 aa	Known RBP	10.62	□□□□□ -0.71
NR1I3-231	ENST00000512340	TECPR2	O15040	1411 aa		10.62	□□□□□ -0.71
NR1I3-231	ENST00000512340	RBM33	Q96EV2	1170 aa	Known RBP	10.62	□□□□□ -0.71
NR1I3-231	ENST00000512340	ADGRL3	Q9HAR2	1447 aa		10.61	□□□□□ -0.71
NR1I3-231	ENST00000512340	RGS17	Q9UGC6	210 aa	Predicted RBP	10.61	□□□□□ -0.71
NR1I3-231	ENST00000512340	EIF3A	Q14152	1382 aa	Known RBP	10.61	□□□□□ -0.71
NR1I3-231	ENST00000512340	TRAK1	Q9UPV9	953 aa		10.6	□□□□□ -0.71
NR1I3-231	ENST00000512340	ROBO2	Q9HCK4	1378 aa		10.6	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms