RNA–Protein interactions for RNA: ENST00000512340.5

NR1I3-231, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 891 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-231	ENST00000512340	NISCH	Q9Y2I1	1504 aa		17.71	■□□□□ 0.43
NR1I3-231	ENST00000512340	CCDC180	Q9P1Z9	1646 aa		15.74	■□□□□ 0.11
NR1I3-231	ENST00000512340	ABCC9	O60706	1549 aa		15.53	■□□□□ 0.08
NR1I3-231	ENST00000512340	DCAF8L2	P0C7V8	631 aa		14.9	□□□□□ -0.02
NR1I3-231	ENST00000512340	RB1CC1	Q8TDY2	1594 aa		14.84	□□□□□ -0.03
NR1I3-231	ENST00000512340	NACAD	O15069	1562 aa		14.82	□□□□□ -0.04
NR1I3-231	ENST00000512340	MYO15B	Q96JP2	1530 aa		14.75	□□□□□ -0.05
NR1I3-231	ENST00000512340	ZCCHC6	Q5VYS8	1495 aa	Known RBP	14.74	□□□□□ -0.05
NR1I3-231	ENST00000512340	DNAJC5B	Q9UF47	199 aa		14.73	□□□□□ -0.05
NR1I3-231	ENST00000512340	DCAF1	Q9Y4B6	1507 aa		14.69	□□□□□ -0.06
NR1I3-231	ENST00000512340	PABPN1	Q86U42	306 aa	Known RBP eCLIP	14.37	□□□□□ -0.11
NR1I3-231	ENST00000512340	UNC13A	Q9UPW8	1703 aa		14.35	□□□□□ -0.11
NR1I3-231	ENST00000512340	SCRIB	Q14160	1630 aa		14.32	□□□□□ -0.12
NR1I3-231	ENST00000512340	SHROOM4	Q9ULL8	1493 aa		14.29	□□□□□ -0.12
NR1I3-231	ENST00000512340	BICRA	Q9NZM4	1560 aa		14.27	□□□□□ -0.12
NR1I3-231	ENST00000512340	CECR2	Q9BXF3	1484 aa		14.09	□□□□□ -0.15
NR1I3-231	ENST00000512340	CC2D2A	Q9P2K1	1620 aa		14.07	□□□□□ -0.16
NR1I3-231	ENST00000512340	EIF4G1	Q04637	1599 aa	Known RBP	14	□□□□□ -0.17
NR1I3-231	ENST00000512340	DNAJC5	Q9H3Z4	198 aa		13.87	□□□□□ -0.19
NR1I3-231	ENST00000512340	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	13.77	□□□□□ -0.21
NR1I3-231	ENST00000512340	SMARCA4	P51532	1647 aa		13.71	□□□□□ -0.22
NR1I3-231	ENST00000512340	SMARCA2	P51531	1590 aa		13.7	□□□□□ -0.22
NR1I3-231	ENST00000512340	CUX2	O14529	1486 aa		13.66	□□□□□ -0.22
NR1I3-231	ENST00000512340	NCAPD3	P42695	1498 aa		13.65	□□□□□ -0.22
NR1I3-231	ENST00000512340	ATAD2B	Q9ULI0	1458 aa		13.64	□□□□□ -0.23
NR1I3-231	ENST00000512340	MROH2B	Q7Z745	1585 aa		13.59	□□□□□ -0.23
NR1I3-231	ENST00000512340	HMGXB3	Q12766	1538 aa		13.59	□□□□□ -0.23
NR1I3-231	ENST00000512340	PEG3	Q9GZU2	1588 aa		13.58	□□□□□ -0.23
NR1I3-231	ENST00000512340	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.58	□□□□□ -0.24
NR1I3-231	ENST00000512340	ERCC6	Q03468	1493 aa		13.52	□□□□□ -0.25
NR1I3-231	ENST00000512340	RSF1	Q96T23	1441 aa	Predicted RBP	13.5	□□□□□ -0.25
NR1I3-231	ENST00000512340	WIZ	O95785	1651 aa		13.45	□□□□□ -0.26
NR1I3-231	ENST00000512340	TOP2A	P11388	1531 aa	Known RBP	13.38	□□□□□ -0.27
NR1I3-231	ENST00000512340	LAMC3	Q9Y6N6	1575 aa		13.29	□□□□□ -0.28
NR1I3-231	ENST00000512340	SUPT5H	O00267	1087 aa	Known RBP	13.29	□□□□□ -0.28
NR1I3-231	ENST00000512340	CADPS	Q9ULU8	1353 aa		13.28	□□□□□ -0.28
NR1I3-231	ENST00000512340	PDS5B	Q9NTI5	1447 aa		13.28	□□□□□ -0.28
NR1I3-231	ENST00000512340	THOC2	Q8NI27	1593 aa	Known RBP	13.24	□□□□□ -0.29
NR1I3-231	ENST00000512340	NES	P48681	1621 aa		13.23	□□□□□ -0.29
NR1I3-231	ENST00000512340	CCDC88B	A6NC98	1476 aa		13.2	□□□□□ -0.3
NR1I3-231	ENST00000512340	CFTR	P13569	1480 aa		13.18	□□□□□ -0.3
NR1I3-231	ENST00000512340	FANCD2	Q9BXW9	1451 aa		13.11	□□□□□ -0.31
NR1I3-231	ENST00000512340	CEP164	Q9UPV0	1460 aa		13.11	□□□□□ -0.31
NR1I3-231	ENST00000512340	KIF21A	Q7Z4S6	1674 aa		13.09	□□□□□ -0.31
NR1I3-231	ENST00000512340	MRC2	Q9UBG0	1479 aa		13.07	□□□□□ -0.32
NR1I3-231	ENST00000512340	PRDM2	Q13029	1718 aa		13.06	□□□□□ -0.32
NR1I3-231	ENST00000512340	TRIM41	Q8WV44	630 aa		13.05	□□□□□ -0.32
NR1I3-231	ENST00000512340	WDR62	O43379	1518 aa		13.04	□□□□□ -0.32
NR1I3-231	ENST00000512340	ABCC8	Q09428	1581 aa		13.01	□□□□□ -0.33
NR1I3-231	ENST00000512340	OSCAR	Q8IYS5	282 aa		12.94	□□□□□ -0.34
NR1I3-231	ENST00000512340	URB2	Q14146	1524 aa	Known RBP	12.91	□□□□□ -0.34
NR1I3-231	ENST00000512340	DNMBP	Q6XZF7	1577 aa		12.89	□□□□□ -0.35
NR1I3-231	ENST00000512340	TOPBP1	Q92547	1522 aa		12.88	□□□□□ -0.35
NR1I3-231	ENST00000512340	IFT140	Q96RY7	1462 aa		12.85	□□□□□ -0.35
NR1I3-231	ENST00000512340	WRN	Q14191	1432 aa	Predicted RBP eCLIP	12.79	□□□□□ -0.36
NR1I3-231	ENST00000512340	SOGA1	O94964	1423 aa		12.78	□□□□□ -0.36
NR1I3-231	ENST00000512340	POLA1	P09884	1462 aa	Predicted RBP	12.77	□□□□□ -0.37
NR1I3-231	ENST00000512340	CUX1	P39880	1505 aa		12.77	□□□□□ -0.37
NR1I3-231	ENST00000512340	FGD5	Q6ZNL6	1462 aa		12.75	□□□□□ -0.37
NR1I3-231	ENST00000512340	RIMBP3C	A6NJZ7	1639 aa		12.73	□□□□□ -0.37
NR1I3-231	ENST00000512340	RIMBP3B	A6NNM3	1639 aa		12.73	□□□□□ -0.37
NR1I3-231	ENST00000512340	RIMBP3	Q9UFD9	1639 aa		12.73	□□□□□ -0.37
NR1I3-231	ENST00000512340	WDR97	A6NE52	1622 aa		12.71	□□□□□ -0.37
NR1I3-231	ENST00000512340	TOP2B	Q02880	1626 aa		12.71	□□□□□ -0.37
NR1I3-231	ENST00000512340	ARHGEF11	O15085	1522 aa		12.69	□□□□□ -0.38
NR1I3-231	ENST00000512340	RAD54L2	Q9Y4B4	1467 aa		12.69	□□□□□ -0.38
NR1I3-231	ENST00000512340	TARBP1	Q13395	1621 aa	Known RBP	12.69	□□□□□ -0.38
NR1I3-231	ENST00000512340	BIVM-ERCC5	R4GMW8	1640 aa		12.69	□□□□□ -0.38
NR1I3-231	ENST00000512340	ZNF608	Q9ULD9	1512 aa	Predicted RBP	12.67	□□□□□ -0.38
NR1I3-231	ENST00000512340	TDRD9	Q8NDG6	1382 aa	Known RBP	12.67	□□□□□ -0.38
NR1I3-231	ENST00000512340	SYNJ1	O43426	1573 aa		12.65	□□□□□ -0.38
NR1I3-231	ENST00000512340	EIF4G3	O43432	1585 aa	Known RBP	12.65	□□□□□ -0.38
NR1I3-231	ENST00000512340	ABCA10	Q8WWZ4	1543 aa		12.65	□□□□□ -0.38
NR1I3-231	ENST00000512340	AQR	O60306	1485 aa	Known RBP eCLIP	12.65	□□□□□ -0.38
NR1I3-231	ENST00000512340	GRIN2B	Q13224	1484 aa		12.63	□□□□□ -0.39
NR1I3-231	ENST00000512340	GAPVD1	Q14C86	1478 aa		12.62	□□□□□ -0.39
NR1I3-231	ENST00000512340	FBLN2	P98095	1184 aa		12.61	□□□□□ -0.39
NR1I3-231	ENST00000512340	CHMP7	Q8WUX9	453 aa	Predicted RBP	12.6	□□□□□ -0.39
NR1I3-231	ENST00000512340	MAGI1	Q96QZ7	1491 aa	Predicted RBP	12.59	□□□□□ -0.39
NR1I3-231	ENST00000512340	CYB5RL	Q6IPT4	315 aa		12.57	□□□□□ -0.4
NR1I3-231	ENST00000512340	KIF27	Q86VH2	1401 aa		12.56	□□□□□ -0.4
NR1I3-231	ENST00000512340	SNAPC4	Q5SXM2	1469 aa		12.55	□□□□□ -0.4
NR1I3-231	ENST00000512340	ABCA5	Q8WWZ7	1642 aa		12.54	□□□□□ -0.4
NR1I3-231	ENST00000512340	TRH	P20396	242 aa	Predicted RBP	12.53	□□□□□ -0.4
NR1I3-231	ENST00000512340	SYNJ2	O15056	1496 aa		12.53	□□□□□ -0.4
NR1I3-231	ENST00000512340	ERICH3	Q5RHP9	1530 aa		12.52	□□□□□ -0.4
NR1I3-231	ENST00000512340	PBRM1	Q86U86	1689 aa		12.52	□□□□□ -0.4
NR1I3-231	ENST00000512340	CHD1	O14646	1710 aa		12.52	□□□□□ -0.41
NR1I3-231	ENST00000512340	ARAP1	Q96P48	1450 aa		12.52	□□□□□ -0.41
NR1I3-231	ENST00000512340	FHAD1	B1AJZ9	1412 aa		12.5	□□□□□ -0.41
NR1I3-231	ENST00000512340	IGF1R	P08069	1367 aa		12.43	□□□□□ -0.42
NR1I3-231	ENST00000512340	ADAMTS12	P58397	1594 aa		12.43	□□□□□ -0.42
NR1I3-231	ENST00000512340	CUL7	Q14999	1698 aa		12.43	□□□□□ -0.42
NR1I3-231	ENST00000512340	GRIN2A	Q12879	1464 aa		12.42	□□□□□ -0.42
NR1I3-231	ENST00000512340	AEBP2	Q6ZN18	517 aa	Predicted RBP	12.42	□□□□□ -0.42
NR1I3-231	ENST00000512340	CLASP1	Q7Z460	1538 aa		12.42	□□□□□ -0.42
NR1I3-231	ENST00000512340	CARMIL1	Q5VZK9	1371 aa		12.41	□□□□□ -0.42
NR1I3-231	ENST00000512340	EEA1	Q15075	1411 aa		12.4	□□□□□ -0.42
NR1I3-231	ENST00000512340	CHIC1	Q5VXU3	224 aa		12.39	□□□□□ -0.43
NR1I3-231	ENST00000512340	NUP160	Q12769	1436 aa		12.36	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 183.4 ms