RNA–Protein interactions for RNA: ENST00000497139.5

VEGFA-215, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 2,746 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-215ENST00000497139 SLFN5Q08AF3 891 aa16.53■□□□□ 0.24
VEGFA-215ENST00000497139 GPRASP1Q5JY77 1395 aa16.53■□□□□ 0.24
VEGFA-215ENST00000497139 RAPGEF6Q8TEU7 1601 aa16.52■□□□□ 0.24
VEGFA-215ENST00000497139 SEC24BO95487 1268 aa16.52■□□□□ 0.24
VEGFA-215ENST00000497139 ERBB4Q15303 1308 aa16.52■□□□□ 0.23
VEGFA-215ENST00000497139 NUP153P49790 1475 aaKnown RBP16.51■□□□□ 0.23
VEGFA-215ENST00000497139 PRDM4Q9UKN5 801 aa16.51■□□□□ 0.23
VEGFA-215ENST00000497139 NGEFQ8N5V2 710 aa16.5■□□□□ 0.23
VEGFA-215ENST00000497139 ADAMTS8Q9UP79 889 aa16.5■□□□□ 0.23
VEGFA-215ENST00000497139 PRDM15P57071 1507 aaPredicted RBP16.49■□□□□ 0.23
VEGFA-215ENST00000497139 ABCC2Q92887 1545 aa16.49■□□□□ 0.23
VEGFA-215ENST00000497139 IGHDP01880 384 aa16.49■□□□□ 0.23
VEGFA-215ENST00000497139 WDR43Q15061 677 aaKnown RBP eCLIP16.48■□□□□ 0.238e-10■□□□□ 9.2
VEGFA-215ENST00000497139 GZF1Q9H116 711 aaPredicted RBP16.48■□□□□ 0.23
VEGFA-215ENST00000497139 PRAG1Q86YV5 1406 aa16.48■□□□□ 0.23
VEGFA-215ENST00000497139 SYNJ2O15056 1496 aa16.48■□□□□ 0.23
VEGFA-215ENST00000497139 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.48■□□□□ 0.23
VEGFA-215ENST00000497139 MTERF4Q7Z6M4 381 aaKnown RBP16.48■□□□□ 0.23
VEGFA-215ENST00000497139 CLUAP1Q96AJ1 413 aa16.48■□□□□ 0.23
VEGFA-215ENST00000497139 SKOR2Q2VWA4 1001 aaPredicted RBP16.47■□□□□ 0.23
VEGFA-215ENST00000497139 OFD1O75665 1012 aa16.47■□□□□ 0.23
VEGFA-215ENST00000497139 KIAA1211Q6ZU35 1233 aa16.47■□□□□ 0.23
VEGFA-215ENST00000497139 PMFBP1Q8TBY8 1022 aa16.47■□□□□ 0.23
VEGFA-215ENST00000497139 ARXQ96QS3 562 aa16.47■□□□□ 0.23
VEGFA-215ENST00000497139 CCDC173Q0VFZ6 552 aa16.47■□□□□ 0.23
VEGFA-215ENST00000497139 ANKRD50Q9ULJ7 1429 aa16.47■□□□□ 0.23
VEGFA-215ENST00000497139 CC2D1BQ5T0F9 858 aaKnown RBP16.46■□□□□ 0.23
VEGFA-215ENST00000497139 NCOA3Q9Y6Q9 1424 aa16.45■□□□□ 0.22
VEGFA-215ENST00000497139 EIF2AK4Q9P2K8 1649 aaKnown RBP16.45■□□□□ 0.22
VEGFA-215ENST00000497139 SHANK2Q9UPX8 1470 aa16.45■□□□□ 0.22
VEGFA-215ENST00000497139 PIK3C2GO75747 1445 aa16.45■□□□□ 0.22
VEGFA-215ENST00000497139 PPP1R9BQ96SB3 815 aa16.45■□□□□ 0.22
VEGFA-215ENST00000497139 PTPRGP23470 1445 aa16.44■□□□□ 0.22
VEGFA-215ENST00000497139 E9PSI1 815 aa16.44■□□□□ 0.22
VEGFA-215ENST00000497139 ZSCAN30Q86W11 494 aa16.44■□□□□ 0.22
VEGFA-215ENST00000497139 SMAP1Q8IYB5 467 aaPredicted RBP16.44■□□□□ 0.22
VEGFA-215ENST00000497139 ABCC10Q5T3U5 1492 aa16.43■□□□□ 0.22
VEGFA-215ENST00000497139 ERBINQ96RT1 1412 aa16.43■□□□□ 0.22
VEGFA-215ENST00000497139 ZNF644Q9H582 1327 aaPredicted RBP16.43■□□□□ 0.22
VEGFA-215ENST00000497139 PANK3Q9H999 370 aa16.43■□□□□ 0.22
VEGFA-215ENST00000497139 CIZ1Q9ULV3 898 aaPredicted RBP16.43■□□□□ 0.22
VEGFA-215ENST00000497139 ARID3CA6NKF2 412 aa16.42■□□□□ 0.22
VEGFA-215ENST00000497139 RTEL1-TNFRSF6BF6WH68 1400 aa16.42■□□□□ 0.22
VEGFA-215ENST00000497139 NUP160Q12769 1436 aa16.42■□□□□ 0.22
VEGFA-215ENST00000497139 PLEKHG5O94827 1062 aa16.42■□□□□ 0.22
VEGFA-215ENST00000497139 TROQ12816 1431 aaPredicted RBP16.41■□□□□ 0.22
VEGFA-215ENST00000497139 ADCY10Q96PN6 1610 aa16.41■□□□□ 0.22
VEGFA-215ENST00000497139 HS1BP3Q53T59 392 aa16.41■□□□□ 0.22
VEGFA-215ENST00000497139 IBTKQ9P2D0 1353 aaPredicted RBP16.41■□□□□ 0.22
VEGFA-215ENST00000497139 CHMP7Q8WUX9 453 aaPredicted RBP16.41■□□□□ 0.22
VEGFA-215ENST00000497139 DISP3Q9P2K9 1392 aa16.41■□□□□ 0.22
VEGFA-215ENST00000497139 RBM10P98175 930 aaKnown RBP16.4■□□□□ 0.22
VEGFA-215ENST00000497139 TESK2Q96S53 571 aa16.4■□□□□ 0.22
VEGFA-215ENST00000497139 NUP155O75694 1391 aa16.4■□□□□ 0.22
VEGFA-215ENST00000497139 ZNF692Q9BU19 519 aaPredicted RBP16.4■□□□□ 0.22
VEGFA-215ENST00000497139 PPP2R1AP30153 589 aa16.39■□□□□ 0.22
VEGFA-215ENST00000497139 DDIT3P35638 169 aa16.39■□□□□ 0.22
VEGFA-215ENST00000497139 GBP4Q96PP9 640 aa16.39■□□□□ 0.22
VEGFA-215ENST00000497139 TMF1P82094 1093 aa16.39■□□□□ 0.21
VEGFA-215ENST00000497139 ANP32BQ92688 251 aaKnown RBP16.39■□□□□ 0.21
VEGFA-215ENST00000497139 CARMIL2Q6F5E8 1435 aa16.39■□□□□ 0.21
VEGFA-215ENST00000497139 KDM2AQ9Y2K7 1162 aa16.39■□□□□ 0.21
VEGFA-215ENST00000497139 HSCBQ8IWL3 235 aa16.38■□□□□ 0.21
VEGFA-215ENST00000497139 NPC1L1Q9UHC9 1359 aa16.38■□□□□ 0.21
VEGFA-215ENST00000497139 BCAR3O75815 825 aa16.37■□□□□ 0.21
VEGFA-215ENST00000497139 MSNP26038 577 aaKnown RBP16.37■□□□□ 0.21
VEGFA-215ENST00000497139 RIPK4P57078 832 aa16.37■□□□□ 0.21
VEGFA-215ENST00000497139 C22orf23Q9BZE7 217 aa16.37■□□□□ 0.21
VEGFA-215ENST00000497139 PLB1Q6P1J6 1458 aa16.36■□□□□ 0.21
VEGFA-215ENST00000497139 SYNMO15061 1565 aa16.36■□□□□ 0.21
VEGFA-215ENST00000497139 FBLN2P98095 1184 aa16.36■□□□□ 0.21
VEGFA-215ENST00000497139 PRG4Q92954 1404 aaPredicted RBP16.36■□□□□ 0.21
VEGFA-215ENST00000497139 SNX21Q969T3 373 aa16.35■□□□□ 0.21
VEGFA-215ENST00000497139 GPATCH8Q9UKJ3 1502 aaKnown RBP16.35■□□□□ 0.21
VEGFA-215ENST00000497139 WDR7Q9Y4E6 1490 aa16.34■□□□□ 0.21
VEGFA-215ENST00000497139 CFDP1Q9UEE9 299 aaPredicted RBP16.34■□□□□ 0.21
VEGFA-215ENST00000497139 SHROOM2Q13796 1616 aa16.34■□□□□ 0.21
VEGFA-215ENST00000497139 RNF17Q9BXT8 1623 aaKnown RBP16.34■□□□□ 0.21
VEGFA-215ENST00000497139 RWDD1Q9H446 243 aaPredicted RBP16.34■□□□□ 0.21
VEGFA-215ENST00000497139 ASXL1Q8IXJ9 1541 aa16.34■□□□□ 0.21
VEGFA-215ENST00000497139 CCDC141Q6ZP82 1450 aa16.34■□□□□ 0.21
VEGFA-215ENST00000497139 UTP14CQ5TAP6 766 aaKnown RBP16.33■□□□□ 0.21
VEGFA-215ENST00000497139 GAS2L3Q86XJ1 694 aa16.33■□□□□ 0.21
VEGFA-215ENST00000497139 SMC5Q8IY18 1101 aa16.33■□□□□ 0.21
VEGFA-215ENST00000497139 ZNF500O60304 480 aaPredicted RBP16.33■□□□□ 0.2
VEGFA-215ENST00000497139 JPH4Q96JJ6 628 aa16.33■□□□□ 0.2
VEGFA-215ENST00000497139 PDZRN3Q9UPQ7 1066 aa16.33■□□□□ 0.2
VEGFA-215ENST00000497139 DYNC1I1O14576 645 aa16.32■□□□□ 0.2
VEGFA-215ENST00000497139 CANXP27824 592 aaKnown RBP16.32■□□□□ 0.2
VEGFA-215ENST00000497139 KNSTRNQ9Y448 316 aa16.32■□□□□ 0.2
VEGFA-215ENST00000497139 FAM135AQ9P2D6 1515 aa16.32■□□□□ 0.2
VEGFA-215ENST00000497139 NASPP49321 788 aaPredicted RBP16.32■□□□□ 0.2
VEGFA-215ENST00000497139 ARHGAP31Q2M1Z3 1444 aa16.32■□□□□ 0.2
VEGFA-215ENST00000497139 MAGI2Q86UL8 1455 aa16.32■□□□□ 0.2
VEGFA-215ENST00000497139 ABCA8O94911 1581 aa16.31■□□□□ 0.2
VEGFA-215ENST00000497139 RAB3GAP1Q15042 981 aa16.31■□□□□ 0.2
VEGFA-215ENST00000497139 CSPP1Q1MSJ5 1256 aa16.31■□□□□ 0.2
VEGFA-215ENST00000497139 COG6Q9Y2V7 657 aa16.31■□□□□ 0.2
VEGFA-215ENST00000497139 CDC42BPAQ5VT25 1732 aa16.31■□□□□ 0.2
VEGFA-215ENST00000497139 NCLP19338 710 aaKnown RBP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms